# TARGET T0335 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0335.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12.359 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.004 0.024 0.566 0.001 0.019 0.232 0.001 0.001 0.004 0.055 0.048 0.017 0.029 2 I 0.002 0.027 0.538 0.001 0.019 0.267 0.001 0.001 0.003 0.064 0.047 0.010 0.021 3 S 0.001 0.005 0.337 0.001 0.023 0.498 0.001 0.001 0.001 0.064 0.058 0.004 0.007 4 N 0.001 0.001 0.024 0.001 0.021 0.905 0.001 0.001 0.001 0.014 0.035 0.001 0.001 5 A 0.001 0.001 0.011 0.001 0.013 0.948 0.001 0.001 0.001 0.006 0.020 0.001 0.001 6 K 0.001 0.001 0.010 0.001 0.010 0.963 0.001 0.001 0.001 0.002 0.011 0.001 0.001 7 I 0.001 0.001 0.015 0.001 0.004 0.970 0.001 0.001 0.001 0.005 0.005 0.001 0.001 8 A 0.001 0.001 0.008 0.001 0.002 0.975 0.001 0.001 0.001 0.005 0.008 0.001 0.001 9 R 0.001 0.001 0.004 0.001 0.001 0.981 0.001 0.001 0.001 0.002 0.010 0.001 0.001 10 I 0.001 0.001 0.003 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.005 0.001 0.001 11 N 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 12 E 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 13 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 14 A 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 15 A 0.001 0.001 0.001 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.009 0.001 0.001 16 K 0.001 0.001 0.002 0.001 0.002 0.971 0.001 0.001 0.001 0.002 0.023 0.001 0.001 17 A 0.001 0.001 0.016 0.001 0.007 0.920 0.001 0.001 0.001 0.010 0.046 0.001 0.001 18 K 0.001 0.003 0.031 0.001 0.024 0.833 0.001 0.001 0.001 0.013 0.094 0.001 0.001 19 A 0.001 0.003 0.054 0.001 0.024 0.667 0.001 0.001 0.001 0.027 0.222 0.001 0.001 20 G 0.001 0.002 0.037 0.001 0.023 0.111 0.001 0.001 0.001 0.112 0.713 0.001 0.001 21 V 0.001 0.012 0.452 0.001 0.008 0.029 0.001 0.001 0.006 0.176 0.308 0.002 0.005 22 I 0.001 0.085 0.734 0.001 0.001 0.006 0.001 0.001 0.012 0.138 0.010 0.006 0.006 23 T 0.001 0.017 0.852 0.001 0.001 0.025 0.001 0.001 0.007 0.085 0.005 0.001 0.008 24 E 0.001 0.001 0.003 0.001 0.010 0.971 0.001 0.001 0.001 0.003 0.013 0.001 0.001 25 E 0.001 0.001 0.003 0.001 0.017 0.970 0.001 0.001 0.001 0.001 0.009 0.001 0.001 26 E 0.001 0.001 0.004 0.001 0.007 0.986 0.001 0.001 0.001 0.002 0.002 0.001 0.001 27 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 29 E 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.005 0.001 0.001 30 Q 0.001 0.001 0.003 0.001 0.001 0.992 0.001 0.001 0.001 0.002 0.003 0.001 0.001 31 Q 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 32 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 33 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 34 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 35 Q 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 36 E 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 37 Y 0.001 0.001 0.001 0.001 0.001 0.986 0.001 0.001 0.001 0.001 0.011 0.001 0.001 38 L 0.001 0.001 0.002 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.008 0.001 0.001 39 K 0.001 0.001 0.001 0.001 0.001 0.980 0.001 0.001 0.001 0.001 0.017 0.001 0.001 40 G 0.001 0.001 0.002 0.001 0.004 0.957 0.001 0.001 0.001 0.001 0.036 0.001 0.001 41 F 0.001 0.001 0.019 0.001 0.007 0.948 0.001 0.001 0.001 0.009 0.016 0.001 0.001 42 R 0.001 0.001 0.007 0.001 0.007 0.976 0.001 0.001 0.001 0.003 0.006 0.001 0.001 43 S 0.001 0.001 0.001 0.001 0.004 0.986 0.001 0.001 0.001 0.001 0.007 0.001 0.001 44 S 0.001 0.001 0.002 0.001 0.005 0.985 0.001 0.001 0.001 0.001 0.008 0.001 0.001 45 M 0.001 0.001 0.005 0.001 0.006 0.979 0.001 0.001 0.001 0.002 0.008 0.001 0.001 46 K 0.001 0.001 0.004 0.001 0.022 0.946 0.001 0.001 0.001 0.003 0.023 0.001 0.001 47 N 0.001 0.001 0.006 0.001 0.025 0.849 0.001 0.001 0.001 0.009 0.107 0.001 0.001 48 T 0.001 0.002 0.056 0.001 0.065 0.683 0.001 0.001 0.003 0.017 0.166 0.001 0.005 49 L 0.002 0.014 0.340 0.001 0.056 0.438 0.002 0.002 0.037 0.047 0.034 0.008 0.021 50 K 0.001 0.007 0.122 0.156 0.095 0.228 0.001 0.001 0.019 0.148 0.188 0.025 0.010 51 S 0.008 0.004 0.077 0.103 0.093 0.065 0.003 0.003 0.044 0.172 0.352 0.032 0.045 52 V 0.041 0.007 0.274 0.013 0.019 0.017 0.017 0.013 0.204 0.050 0.022 0.064 0.258 53 K 0.056 0.008 0.086 0.007 0.003 0.007 0.037 0.025 0.474 0.027 0.011 0.160 0.100 54 I 0.095 0.007 0.055 0.001 0.001 0.004 0.063 0.051 0.327 0.011 0.001 0.120 0.265 55 I 0.142 0.203 0.104 0.010 0.001 0.004 0.047 0.029 0.154 0.016 0.002 0.083 0.205 56 D 0.001 0.030 0.866 0.001 0.001 0.001 0.001 0.001 0.008 0.021 0.002 0.014 0.055 57 P 0.001 0.001 0.009 0.001 0.009 0.016 0.001 0.001 0.001 0.013 0.952 0.001 0.001 58 E 0.001 0.001 0.005 0.001 0.008 0.005 0.001 0.001 0.001 0.024 0.955 0.001 0.001 59 G 0.001 0.007 0.137 0.001 0.011 0.004 0.001 0.001 0.001 0.755 0.081 0.003 0.001 60 N 0.001 0.013 0.409 0.001 0.031 0.016 0.001 0.001 0.001 0.197 0.297 0.001 0.034 61 D 0.004 0.258 0.287 0.005 0.039 0.012 0.001 0.001 0.001 0.174 0.130 0.016 0.074 62 V 0.006 0.253 0.510 0.004 0.017 0.014 0.001 0.001 0.001 0.099 0.025 0.027 0.043 63 T 0.001 0.022 0.876 0.001 0.003 0.018 0.001 0.001 0.001 0.043 0.003 0.007 0.025 64 P 0.001 0.001 0.020 0.001 0.049 0.882 0.001 0.001 0.001 0.007 0.039 0.001 0.002 65 E 0.001 0.001 0.004 0.001 0.050 0.917 0.001 0.001 0.001 0.002 0.025 0.001 0.001 66 K 0.001 0.001 0.006 0.001 0.050 0.925 0.001 0.001 0.001 0.003 0.014 0.001 0.001 67 L 0.001 0.002 0.024 0.001 0.009 0.945 0.001 0.001 0.001 0.007 0.011 0.001 0.002 68 K 0.001 0.001 0.024 0.001 0.006 0.946 0.001 0.001 0.001 0.007 0.013 0.001 0.001 69 R 0.001 0.001 0.007 0.001 0.005 0.969 0.001 0.001 0.001 0.003 0.014 0.001 0.001 70 E 0.001 0.001 0.012 0.001 0.005 0.960 0.001 0.001 0.001 0.005 0.015 0.001 0.001 71 Q 0.001 0.001 0.024 0.001 0.011 0.936 0.001 0.001 0.001 0.008 0.019 0.001 0.001 72 R 0.001 0.002 0.029 0.001 0.010 0.906 0.001 0.001 0.001 0.008 0.043 0.001 0.001 73 N 0.001 0.002 0.042 0.001 0.013 0.771 0.001 0.001 0.001 0.014 0.155 0.001 0.001 74 N 0.001 0.002 0.081 0.001 0.015 0.573 0.001 0.001 0.001 0.043 0.282 0.001 0.001 75 K 0.001 0.007 0.200 0.001 0.031 0.438 0.001 0.001 0.001 0.093 0.221 0.003 0.005 76 L 0.001 0.017 0.286 0.001 0.044 0.393 0.001 0.001 0.003 0.126 0.108 0.006 0.015 77 H 0.001 0.019 0.298 0.002 0.063 0.375 0.001 0.001 0.002 0.107 0.111 0.011 0.010 78 L 0.002 0.015 0.271 0.002 0.093 0.376 0.001 0.001 0.003 0.082 0.127 0.009 0.019 79 E 0.002 0.012 0.196 0.003 0.092 0.382 0.001 0.001 0.002 0.106 0.187 0.008 0.011 80 H 0.002 0.016 0.220 0.002 0.126 0.341 0.001 0.001 0.003 0.092 0.179 0.008 0.011 81 H 0.002 0.019 0.224 0.002 0.134 0.274 0.001 0.001 0.002 0.095 0.225 0.007 0.016 82 H 0.002 0.015 0.240 0.003 0.115 0.168 0.001 0.001 0.001 0.123 0.312 0.011 0.009 83 H 0.001 0.013 0.321 0.002 0.064 0.100 0.001 0.001 0.002 0.207 0.272 0.007 0.010 84 H 0.001 0.015 0.536 0.002 0.027 0.047 0.001 0.001 0.001 0.177 0.181 0.004 0.008 85 H 0.001 0.009 0.853 0.001 0.006 0.012 0.001 0.001 0.001 0.091 0.018 0.003 0.005