# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hfeS 123 3.06e-01 1hfeS a.137.4.1 19640 1y96B 85 1.73e+00 2a2fX 325 2.13e+00 1vd2A 89 2.27e+00 d.15.2.2 108517 1wmhA 89 2.96e+00 1wdtA 665 3.21e+00 1xhdA 173 3.43e+00 1fltV 98 3.53e+00 1vpfA g.17.1.1 44751 1mkkA 96 3.71e+00 g.17.1.1 79240 2ezh 75 4.75e+00 2ezh a.4.1.2 16029 1k5nA 276 6.70e+00 b.1.1.2,d.19.1.1 77266,77267 1bg1A 722 6.84e+00 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1p9yA 121 6.99e+00 d.241.2.1 94402 1mvwC 147 7.67e+00 i.15.1.1 79525 2c5kT 95 8.16e+00 1icxA 155 8.37e+00 d.129.3.1 71191 1avsA 90 1.02e+01 1cll a.39.1.5 17226 2amyA 246 1.05e+01 1umdA 367 1.07e+01 c.36.1.11 99599 1ybxA 143 1.12e+01 1wq8A 110 1.19e+01 1cpq 129 1.26e+01 1cpq a.24.3.2 16556 1a7w 69 1.30e+01 1a7w a.22.1.2 16477 1xouA 192 1.40e+01 1hq3D 103 1.41e+01 1aoiB a.22.1.1 16464 2beqD 48 1.42e+01 1tzyD 103 1.45e+01 a.22.1.1 107533 2vsgA 358 1.49e+01 2vsgA h.4.1.1 45780 1b67A 68 1.59e+01 1a7w a.22.1.2 16474 1zvzA 279 1.59e+01 1qo7A 394 1.80e+01 1qo7A c.69.1.11 34697 2dd8S 202 1.90e+01 2aucA 126 2.12e+01 1mvwB 145 2.23e+01 i.15.1.1 79524 1nkd 65 2.30e+01 1nkd a.30.1.1 16974 1x54A 434 2.35e+01 1ofcX 304 2.35e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1yzyA 413 2.38e+01 1nu7D 282 2.48e+01 a.8.6.1,a.8.6.1 92191,92192 1noyA 388 2.52e+01 1clqA c.55.3.5 33713 1txqB 86 2.55e+01 2es4D 332 2.62e+01 1doi 128 2.73e+01 1awd d.15.4.1 37676 1vdlA 80 2.82e+01 a.5.2.1 108528 2ajfE 180 2.84e+01 1cxpA 104 2.85e+01 1d2vA a.93.1.2 18695 1d2vA 104 2.85e+01 1d2vA a.93.1.2 18697 1fjgL 135 2.87e+01 1fjfL b.40.4.5 25346 1zs4A 83 2.96e+01 2fueA 262 2.98e+01 2bvpA 276 3.00e+01 1tjlA 151 3.02e+01 a.2.14.1,g.39.1.13 107027,107028 1rfmA 344 3.05e+01 c.122.1.1 97385 1xh3A 276 3.08e+01 1xzoA 174 3.19e+01 1fzvA 132 3.21e+01 1vpfA g.17.1.1 60159 1lp3A 519 3.25e+01 b.121.5.2 74169 1dp3A 55 3.26e+01 1dp3A a.55.1.2 59128 1vmhA 144 3.27e+01 2fm9A 215 3.47e+01 1grj 158 3.56e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1upvA 257 3.62e+01 1dd3C 32 3.70e+01 1dd3C a.108.1.1 19033 1zavU 30 3.78e+01 2gboA 104 3.81e+01 1ag7 34 3.84e+01 1ag7 g.3.6.1 44086 2bfdA 400 3.89e+01 2aqaA 63 3.90e+01 2f66C 82 3.92e+01 2d68A 82 3.94e+01 1b74A 254 3.96e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 1xbfA 140 4.07e+01 d.273.1.1 109538 1tn4 159 4.11e+01 1ncx a.39.1.5 17248 1dxrH 258 4.21e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1n8jA 186 4.27e+01 c.47.1.10 85401 1v3wA 173 4.38e+01 b.81.1.5 100291 1dwkA 156 4.41e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1r59O 505 4.58e+01 1nrlA 316 4.62e+01 a.123.1.1 92091 2ghjA 118 4.76e+01 1ie9A 259 4.78e+01 1db1A a.123.1.1 62318 1ihp 438 4.78e+01 1ihp c.60.1.2 33993 1o6uA 403 4.81e+01 a.5.3.1,b.132.1.1,c.13.1.1 92589,92590,92591 1olmA 403 4.95e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1br1B 150 5.01e+01 1wdcC a.39.1.5 17309 1dvoA 152 5.13e+01 1dvoA a.136.1.1 19623 1j1jA 240 5.16e+01 a.118.16.1 90762 1x7yA 400 5.27e+01 1v1dA 31 5.29e+01 1t3wA 148 5.31e+01 1yhfA 115 5.51e+01 1lj2A 110 5.55e+01 h.1.13.2 73926 1byb 495 5.69e+01 1byb c.1.8.1 28790 1bx7 55 5.86e+01 1bx7 g.3.15.1 44355 1ic2A 81 5.91e+01 h.1.5.1 62247 1vjvA 415 6.52e+01 d.3.1.9 108632 2crbA 97 6.77e+01 2ap3A 199 6.89e+01 1n0qA 93 6.93e+01 k.37.1.1 79754 2bykA 140 6.96e+01 2aukA 190 7.01e+01 1ns5A 155 7.06e+01 c.116.1.3 80705 1l8dA 112 7.11e+01 h.4.12.1 73687 1ic8A 194 7.32e+01 a.4.1.1,a.35.1.1 76740,76741 2fsjA 346 7.56e+01 1v3hA 495 7.79e+01 c.1.8.1 108303 1u4nA 310 7.89e+01 1ri7A 171 7.96e+01 a.4.5.32,d.58.4.2 97504,97505 1w6uA 302 8.09e+01 2ahqA 76 8.16e+01 1fr3A 67 8.26e+01 1fr3A b.40.6.1 25436 1eijA 80 8.30e+01 1eijA a.5.6.1 16298 1iapA 211 8.31e+01 a.91.1.1 62119 1keyA 235 8.42e+01 a.118.16.1 72389 1dz3A 130 8.47e+01 1dz3A c.23.1.1 31105 1q0sA 259 8.52e+01 c.66.1.28 95509 1y14B 171 8.53e+01 1o22A 170 8.55e+01 d.238.1.1 86557 1pq9A 253 8.63e+01 a.123.1.1 95004 1ib8A 164 8.64e+01 b.38.2.1,d.52.4.1 71168,71169 1q6cA 495 8.68e+01 c.1.8.1 95970 2f6hX 419 8.69e+01 1y7qA 98 8.82e+01