make[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334' mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0334.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.predburial.rdb sed -e s/XXX0000/T0334/ -e s/START_COL/1/ \ -e s/COSTFCN/predburial/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e s/REAL_PDB// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /cse/grads/jarchie/projects/cvs/karplus/undertaker/undertaker # command:# Seed set to 1173642389 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.19306 sec, elapsed time= 6.28115 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.27205 sec, elapsed time= 6.38996 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0334 numbered 1 through 530 Created new target T0334 from T0334.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:Error: ReadConformPDBidsNo chains found for ID set: # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:# reading script from file predburial.costfcn # Read 5 alphabets from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # created predicted BurialPredCostFcn pred_burial2k # created predicted BurialPredCostFcn pred_burial2k_simple # created predicted BurialPredCostFcn pred_burial04 # created predicted BurialPredCostFcn pred_burial04_simple # created predicted BurialPredCostFcn pred_burial06 # created predicted BurialPredCostFcn pred_burial06_simple # reading predictions from T0334.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0334.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0334.t06.alpha.rdb # created predicted alpha cost function pred_alpha06 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 5 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 5 * pred_burial2k_simple(9.65) + 5 * pred_burial2k(9.65) + 5 * pred_burial04_simple(9.65) + 5 * pred_burial04(9.65) + 5 * pred_burial06_simple(9.65) + 5 * pred_burial06(9.65) + 2 * phobic_fit + 10 * n_ca_c + 20 * bad_peptide + 5 * sidechain + 8 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 50 * break + 3 * pred_alpha2k + 4 * pred_alpha04 + 5 * pred_alpha06 + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair + 1 * missing_atoms ) # command:CPU_time= 9.61454 sec, elapsed time= 10.4781 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -4.29245 # GDT_score(maxd=8,maxw=2.9)= -3.61902 # GDT_score(maxd=8,maxw=3.2)= -3.45663 # GDT_score(maxd=8,maxw=3.5)= -3.32207 # GDT_score(maxd=10,maxw=3.8)= -3.99981 # GDT_score(maxd=10,maxw=4)= -3.88635 # GDT_score(maxd=10,maxw=4.2)= -3.78215 # GDT_score(maxd=12,maxw=4.3)= -4.59844 # GDT_score(maxd=12,maxw=4.5)= -4.46954 # GDT_score(maxd=12,maxw=4.7)= -4.35161 # GDT_score(maxd=14,maxw=5.2)= -4.86069 # GDT_score(maxd=14,maxw=5.5)= -4.663 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_175224183.pdb -s /var/tmp/to_scwrl_175224183.seq -o /var/tmp/from_scwrl_175224183.pdb > /var/tmp/scwrl_175224183.log Error: can't open any of /var/tmp/from_scwrl_175224183.pdb or /var/tmp/from_scwrl_175224183_b.pdb or /var/tmp/from_scwrl_175224183_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 473 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -4.10377 # GDT_score(maxd=8,maxw=2.9)= -3.5044 # GDT_score(maxd=8,maxw=3.2)= -3.35275 # GDT_score(maxd=8,maxw=3.5)= -3.22709 # GDT_score(maxd=10,maxw=3.8)= -3.90796 # GDT_score(maxd=10,maxw=4)= -3.79911 # GDT_score(maxd=10,maxw=4.2)= -3.69907 # GDT_score(maxd=12,maxw=4.3)= -4.51172 # GDT_score(maxd=12,maxw=4.5)= -4.38668 # GDT_score(maxd=12,maxw=4.7)= -4.27227 # GDT_score(maxd=14,maxw=5.2)= -4.78825 # GDT_score(maxd=14,maxw=5.5)= -4.59562 # command:# request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_598277088.pdb -s /var/tmp/to_scwrl_598277088.seq -o /var/tmp/from_scwrl_598277088.pdb > /var/tmp/scwrl_598277088.log Error: can't open any of /var/tmp/from_scwrl_598277088.pdb or /var/tmp/from_scwrl_598277088_b.pdb or /var/tmp/from_scwrl_598277088_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 479 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -4.0566 # GDT_score(maxd=8,maxw=2.9)= -3.5584 # GDT_score(maxd=8,maxw=3.2)= -3.40169 # GDT_score(maxd=8,maxw=3.5)= -3.27184 # GDT_score(maxd=10,maxw=3.8)= -3.88772 # GDT_score(maxd=10,maxw=4)= -3.78439 # GDT_score(maxd=10,maxw=4.2)= -3.68505 # GDT_score(maxd=12,maxw=4.3)= -4.45089 # GDT_score(maxd=12,maxw=4.5)= -4.32854 # GDT_score(maxd=12,maxw=4.7)= -4.21661 # GDT_score(maxd=14,maxw=5.2)= -4.7331 # GDT_score(maxd=14,maxw=5.5)= -4.55153 # command:# request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_700160531.pdb -s /var/tmp/to_scwrl_700160531.seq -o /var/tmp/from_scwrl_700160531.pdb > /var/tmp/scwrl_700160531.log Error: can't open any of /var/tmp/from_scwrl_700160531.pdb or /var/tmp/from_scwrl_700160531_b.pdb or /var/tmp/from_scwrl_700160531_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 468 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -4.15094 # GDT_score(maxd=8,maxw=2.9)= -3.54047 # GDT_score(maxd=8,maxw=3.2)= -3.38544 # GDT_score(maxd=8,maxw=3.5)= -3.25698 # GDT_score(maxd=10,maxw=3.8)= -3.90219 # GDT_score(maxd=10,maxw=4)= -3.79829 # GDT_score(maxd=10,maxw=4.2)= -3.69828 # GDT_score(maxd=12,maxw=4.3)= -4.49564 # GDT_score(maxd=12,maxw=4.5)= -4.3713 # GDT_score(maxd=12,maxw=4.7)= -4.2504 # GDT_score(maxd=14,maxw=5.2)= -4.76029 # GDT_score(maxd=14,maxw=5.5)= -4.56239 # command:# request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_86938419.pdb -s /var/tmp/to_scwrl_86938419.seq -o /var/tmp/from_scwrl_86938419.pdb > /var/tmp/scwrl_86938419.log Error: can't open any of /var/tmp/from_scwrl_86938419.pdb or /var/tmp/from_scwrl_86938419_b.pdb or /var/tmp/from_scwrl_86938419_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.888679 # GDT_score = -4.38679 # GDT_score(maxd=8,maxw=2.9)= -3.73813 # GDT_score(maxd=8,maxw=3.2)= -3.56457 # GDT_score(maxd=8,maxw=3.5)= -3.42076 # GDT_score(maxd=10,maxw=3.8)= -4.1013 # GDT_score(maxd=10,maxw=4)= -3.99058 # GDT_score(maxd=10,maxw=4.2)= -3.88918 # GDT_score(maxd=12,maxw=4.3)= -4.65599 # GDT_score(maxd=12,maxw=4.5)= -4.53024 # GDT_score(maxd=12,maxw=4.7)= -4.40972 # GDT_score(maxd=14,maxw=5.2)= -4.91284 # GDT_score(maxd=14,maxw=5.5)= -4.7201 # command:# request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_898691652.pdb -s /var/tmp/to_scwrl_898691652.seq -o /var/tmp/from_scwrl_898691652.pdb > /var/tmp/scwrl_898691652.log Error: can't open any of /var/tmp/from_scwrl_898691652.pdb or /var/tmp/from_scwrl_898691652_b.pdb or /var/tmp/from_scwrl_898691652_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0334.try1-opt2.pdb looking for model 1 # Found a chain break before 488 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -4.19811 # GDT_score(maxd=8,maxw=2.9)= -3.60014 # GDT_score(maxd=8,maxw=3.2)= -3.43951 # GDT_score(maxd=8,maxw=3.5)= -3.30642 # GDT_score(maxd=10,maxw=3.8)= -3.91055 # GDT_score(maxd=10,maxw=4)= -3.80277 # GDT_score(maxd=10,maxw=4.2)= -3.70255 # GDT_score(maxd=12,maxw=4.3)= -4.46918 # GDT_score(maxd=12,maxw=4.5)= -4.34602 # GDT_score(maxd=12,maxw=4.7)= -4.23334 # GDT_score(maxd=14,maxw=5.2)= -4.74973 # GDT_score(maxd=14,maxw=5.5)= -4.56465 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0334.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.913208 # GDT_score = -4.57547 # GDT_score(maxd=8,maxw=2.9)= -3.83835 # GDT_score(maxd=8,maxw=3.2)= -3.65539 # GDT_score(maxd=8,maxw=3.5)= -3.5038 # GDT_score(maxd=10,maxw=3.8)= -4.21449 # GDT_score(maxd=10,maxw=4)= -4.0981 # GDT_score(maxd=10,maxw=4.2)= -3.99155 # GDT_score(maxd=12,maxw=4.3)= -4.79977 # GDT_score(maxd=12,maxw=4.5)= -4.66759 # GDT_score(maxd=12,maxw=4.7)= -4.54123 # GDT_score(maxd=14,maxw=5.2)= -5.06344 # GDT_score(maxd=14,maxw=5.5)= -4.86247 # command:# ReadConformPDB reading from PDB file T0334.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.673585 # GDT_score = -3.58491 # GDT_score(maxd=8,maxw=2.9)= -3.2806 # GDT_score(maxd=8,maxw=3.2)= -3.10616 # GDT_score(maxd=8,maxw=3.5)= -2.949 # GDT_score(maxd=10,maxw=3.8)= -3.33771 # GDT_score(maxd=10,maxw=4)= -3.22742 # GDT_score(maxd=10,maxw=4.2)= -3.12279 # GDT_score(maxd=12,maxw=4.3)= -3.61985 # GDT_score(maxd=12,maxw=4.5)= -3.5032 # GDT_score(maxd=12,maxw=4.7)= -3.39427 # GDT_score(maxd=14,maxw=5.2)= -3.60142 # GDT_score(maxd=14,maxw=5.5)= -3.45644 # command:# ReadConformPDB reading from PDB file T0334.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0334.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0334.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 473 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 479 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 468 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0334.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 488 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 488 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 518 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try1-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 518 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 488 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 488 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 450 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 450 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 477 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try10-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 477 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 478 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try11-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 478 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 477 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 477 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 473 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try12-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 473 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 477 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 477 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 487 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try13-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 487 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try14-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 487 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try14-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 487 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try15-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 468 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try15-opt1.pdb.gz looking for model 1 # Found a chain break before 468 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try15-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 464 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try15-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 464 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try15-opt2.pdb.gz looking for model 1 # Found a chain break before 468 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try15-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 468 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 455 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 455 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try16-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 479 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 479 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 526 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 526 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 450 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try17-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 450 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 526 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 526 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 450 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 450 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 477 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try2-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 477 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 493 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 493 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 526 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try3-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 526 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 459 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 459 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 477 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try6-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 477 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 528 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try7-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 528 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 514 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try8-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 514 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 445 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 445 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 449 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try9-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 449 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 448 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0334.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 448 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/T0334.try1-opt1-scwrl.pdb.gz looking for chain 'A' model 1 # Found a chain break before 520 # copying to AlignedFragments data structure # naming current conformation dimer//try1-opt1-scwrl # ReadConformPDB reading from PDB file ../dimer/decoys/T0334.try1-opt1.pdb.gz looking for chain 'A' model 1 # Found a chain break before 520 # copying to AlignedFragments data structure # naming current conformation dimer//try1-opt1 # ReadConformPDB reading from PDB file ../dimer/decoys/T0334.try1-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 526 # copying to AlignedFragments data structure # naming current conformation dimer//try1-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/T0334.try1-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 526 # copying to AlignedFragments data structure # naming current conformation dimer//try1-opt2.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0334.try1-opt2.unpack.gromacs0.pdb.gz looking for chain 'A' model 1 # Found a chain break before 524 # copying to AlignedFragments data structure # naming current conformation dimer//try1-opt2.unpack.gromacs0 # ReadConformPDB reading from PDB file ../dimer/decoys/T0334.try1-opt2.unpack.gromacs0.repack-nonPC.pdb.gz looking for chain 'A' model 1 # Found a chain break before 524 # copying to AlignedFragments data structure # naming current conformation dimer//try1-opt2.unpack.gromacs0.repack-nonPC # ReadConformPDB reading from PDB file ../dimer/decoys/T0334.try1-opt2.unpack.pdb.gz looking for chain 'A' model 1 # Found a chain break before 526 # copying to AlignedFragments data structure # naming current conformation dimer//try1-opt2.unpack # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-2aqj-from-T0334.try6-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-2aqj-from-try6-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-2aqj-from-T0334.try7-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-2aqj-from-try7-opt2 # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-2aqj-from-T0334.try8-opt2.pdb.gz looking for chain 'A' model 1 # Found a chain break before 451 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-2aqj-from-try8-opt2 # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2013223071.pdb -s /var/tmp/to_scwrl_2013223071.seq -o /var/tmp/from_scwrl_2013223071.pdb > /var/tmp/scwrl_2013223071.log Error: can't open any of /var/tmp/from_scwrl_2013223071.pdb or /var/tmp/from_scwrl_2013223071_b.pdb or /var/tmp/from_scwrl_2013223071_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_859314124.pdb -s /var/tmp/to_scwrl_859314124.seq -o /var/tmp/from_scwrl_859314124.pdb > /var/tmp/scwrl_859314124.log Error: can't open any of /var/tmp/from_scwrl_859314124.pdb or /var/tmp/from_scwrl_859314124_b.pdb or /var/tmp/from_scwrl_859314124_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_715200104.pdb -s /var/tmp/to_scwrl_715200104.seq -o /var/tmp/from_scwrl_715200104.pdb > /var/tmp/scwrl_715200104.log Error: can't open any of /var/tmp/from_scwrl_715200104.pdb or /var/tmp/from_scwrl_715200104_b.pdb or /var/tmp/from_scwrl_715200104_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_203504419.pdb -s /var/tmp/to_scwrl_203504419.seq -o /var/tmp/from_scwrl_203504419.pdb > /var/tmp/scwrl_203504419.log Error: can't open any of /var/tmp/from_scwrl_203504419.pdb or /var/tmp/from_scwrl_203504419_b.pdb or /var/tmp/from_scwrl_203504419_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1487637298.pdb -s /var/tmp/to_scwrl_1487637298.seq -o /var/tmp/from_scwrl_1487637298.pdb > /var/tmp/scwrl_1487637298.log Error: can't open any of /var/tmp/from_scwrl_1487637298.pdb or /var/tmp/from_scwrl_1487637298_b.pdb or /var/tmp/from_scwrl_1487637298_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_184040392.pdb -s /var/tmp/to_scwrl_184040392.seq -o /var/tmp/from_scwrl_184040392.pdb > /var/tmp/scwrl_184040392.log Error: can't open any of /var/tmp/from_scwrl_184040392.pdb or /var/tmp/from_scwrl_184040392_b.pdb or /var/tmp/from_scwrl_184040392_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1268679164.pdb -s /var/tmp/to_scwrl_1268679164.seq -o /var/tmp/from_scwrl_1268679164.pdb > /var/tmp/scwrl_1268679164.log Error: can't open any of /var/tmp/from_scwrl_1268679164.pdb or /var/tmp/from_scwrl_1268679164_b.pdb or /var/tmp/from_scwrl_1268679164_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_726957607.pdb -s /var/tmp/to_scwrl_726957607.seq -o /var/tmp/from_scwrl_726957607.pdb > /var/tmp/scwrl_726957607.log Error: can't open any of /var/tmp/from_scwrl_726957607.pdb or /var/tmp/from_scwrl_726957607_b.pdb or /var/tmp/from_scwrl_726957607_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1903950949.pdb -s /var/tmp/to_scwrl_1903950949.seq -o /var/tmp/from_scwrl_1903950949.pdb > /var/tmp/scwrl_1903950949.log Error: can't open any of /var/tmp/from_scwrl_1903950949.pdb or /var/tmp/from_scwrl_1903950949_b.pdb or /var/tmp/from_scwrl_1903950949_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_610657976.pdb -s /var/tmp/to_scwrl_610657976.seq -o /var/tmp/from_scwrl_610657976.pdb > /var/tmp/scwrl_610657976.log Error: can't open any of /var/tmp/from_scwrl_610657976.pdb or /var/tmp/from_scwrl_610657976_b.pdb or /var/tmp/from_scwrl_610657976_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1837455251.pdb -s /var/tmp/to_scwrl_1837455251.seq -o /var/tmp/from_scwrl_1837455251.pdb > /var/tmp/scwrl_1837455251.log Error: can't open any of /var/tmp/from_scwrl_1837455251.pdb or /var/tmp/from_scwrl_1837455251_b.pdb or /var/tmp/from_scwrl_1837455251_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_843326550.pdb -s /var/tmp/to_scwrl_843326550.seq -o /var/tmp/from_scwrl_843326550.pdb > /var/tmp/scwrl_843326550.log Error: can't open any of /var/tmp/from_scwrl_843326550.pdb or /var/tmp/from_scwrl_843326550_b.pdb or /var/tmp/from_scwrl_843326550_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_997755652.pdb -s /var/tmp/to_scwrl_997755652.seq -o /var/tmp/from_scwrl_997755652.pdb > /var/tmp/scwrl_997755652.log Error: can't open any of /var/tmp/from_scwrl_997755652.pdb or /var/tmp/from_scwrl_997755652_b.pdb or /var/tmp/from_scwrl_997755652_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_202100028.pdb -s /var/tmp/to_scwrl_202100028.seq -o /var/tmp/from_scwrl_202100028.pdb > /var/tmp/scwrl_202100028.log Error: can't open any of /var/tmp/from_scwrl_202100028.pdb or /var/tmp/from_scwrl_202100028_b.pdb or /var/tmp/from_scwrl_202100028_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 491 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_799379286.pdb -s /var/tmp/to_scwrl_799379286.seq -o /var/tmp/from_scwrl_799379286.pdb > /var/tmp/scwrl_799379286.log Error: can't open any of /var/tmp/from_scwrl_799379286.pdb or /var/tmp/from_scwrl_799379286_b.pdb or /var/tmp/from_scwrl_799379286_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 491 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1281135668.pdb -s /var/tmp/to_scwrl_1281135668.seq -o /var/tmp/from_scwrl_1281135668.pdb > /var/tmp/scwrl_1281135668.log Error: can't open any of /var/tmp/from_scwrl_1281135668.pdb or /var/tmp/from_scwrl_1281135668_b.pdb or /var/tmp/from_scwrl_1281135668_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 453 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_255733655.pdb -s /var/tmp/to_scwrl_255733655.seq -o /var/tmp/from_scwrl_255733655.pdb > /var/tmp/scwrl_255733655.log Error: can't open any of /var/tmp/from_scwrl_255733655.pdb or /var/tmp/from_scwrl_255733655_b.pdb or /var/tmp/from_scwrl_255733655_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 519 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1144414962.pdb -s /var/tmp/to_scwrl_1144414962.seq -o /var/tmp/from_scwrl_1144414962.pdb > /var/tmp/scwrl_1144414962.log Error: can't open any of /var/tmp/from_scwrl_1144414962.pdb or /var/tmp/from_scwrl_1144414962_b.pdb or /var/tmp/from_scwrl_1144414962_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 464 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1211354507.pdb -s /var/tmp/to_scwrl_1211354507.seq -o /var/tmp/from_scwrl_1211354507.pdb > /var/tmp/scwrl_1211354507.log Error: can't open any of /var/tmp/from_scwrl_1211354507.pdb or /var/tmp/from_scwrl_1211354507_b.pdb or /var/tmp/from_scwrl_1211354507_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 491 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_638893821.pdb -s /var/tmp/to_scwrl_638893821.seq -o /var/tmp/from_scwrl_638893821.pdb > /var/tmp/scwrl_638893821.log Error: can't open any of /var/tmp/from_scwrl_638893821.pdb or /var/tmp/from_scwrl_638893821_b.pdb or /var/tmp/from_scwrl_638893821_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 491 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_99531142.pdb -s /var/tmp/to_scwrl_99531142.seq -o /var/tmp/from_scwrl_99531142.pdb > /var/tmp/scwrl_99531142.log Error: can't open any of /var/tmp/from_scwrl_99531142.pdb or /var/tmp/from_scwrl_99531142_b.pdb or /var/tmp/from_scwrl_99531142_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 501 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_265928142.pdb -s /var/tmp/to_scwrl_265928142.seq -o /var/tmp/from_scwrl_265928142.pdb > /var/tmp/scwrl_265928142.log Error: can't open any of /var/tmp/from_scwrl_265928142.pdb or /var/tmp/from_scwrl_265928142_b.pdb or /var/tmp/from_scwrl_265928142_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 525 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_605688969.pdb -s /var/tmp/to_scwrl_605688969.seq -o /var/tmp/from_scwrl_605688969.pdb > /var/tmp/scwrl_605688969.log Error: can't open any of /var/tmp/from_scwrl_605688969.pdb or /var/tmp/from_scwrl_605688969_b.pdb or /var/tmp/from_scwrl_605688969_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 472 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1544298003.pdb -s /var/tmp/to_scwrl_1544298003.seq -o /var/tmp/from_scwrl_1544298003.pdb > /var/tmp/scwrl_1544298003.log Error: can't open any of /var/tmp/from_scwrl_1544298003.pdb or /var/tmp/from_scwrl_1544298003_b.pdb or /var/tmp/from_scwrl_1544298003_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 519 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2045616022.pdb -s /var/tmp/to_scwrl_2045616022.seq -o /var/tmp/from_scwrl_2045616022.pdb > /var/tmp/scwrl_2045616022.log Error: can't open any of /var/tmp/from_scwrl_2045616022.pdb or /var/tmp/from_scwrl_2045616022_b.pdb or /var/tmp/from_scwrl_2045616022_a.pdb Error: no new SCWRL conformation added # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 463 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_406765931.pdb -s /var/tmp/to_scwrl_406765931.seq -o /var/tmp/from_scwrl_406765931.pdb > /var/tmp/scwrl_406765931.log Error: can't open any of /var/tmp/from_scwrl_406765931.pdb or /var/tmp/from_scwrl_406765931_b.pdb or /var/tmp/from_scwrl_406765931_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 446 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1719522187.pdb -s /var/tmp/to_scwrl_1719522187.seq -o /var/tmp/from_scwrl_1719522187.pdb > /var/tmp/scwrl_1719522187.log Error: can't open any of /var/tmp/from_scwrl_1719522187.pdb or /var/tmp/from_scwrl_1719522187_b.pdb or /var/tmp/from_scwrl_1719522187_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 491 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_496409463.pdb -s /var/tmp/to_scwrl_496409463.seq -o /var/tmp/from_scwrl_496409463.pdb > /var/tmp/scwrl_496409463.log Error: can't open any of /var/tmp/from_scwrl_496409463.pdb or /var/tmp/from_scwrl_496409463_b.pdb or /var/tmp/from_scwrl_496409463_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 422 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1106926461.pdb -s /var/tmp/to_scwrl_1106926461.seq -o /var/tmp/from_scwrl_1106926461.pdb > /var/tmp/scwrl_1106926461.log Error: can't open any of /var/tmp/from_scwrl_1106926461.pdb or /var/tmp/from_scwrl_1106926461_b.pdb or /var/tmp/from_scwrl_1106926461_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 528 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1806460606.pdb -s /var/tmp/to_scwrl_1806460606.seq -o /var/tmp/from_scwrl_1806460606.pdb > /var/tmp/scwrl_1806460606.log Error: can't open any of /var/tmp/from_scwrl_1806460606.pdb or /var/tmp/from_scwrl_1806460606_b.pdb or /var/tmp/from_scwrl_1806460606_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1395101115.pdb -s /var/tmp/to_scwrl_1395101115.seq -o /var/tmp/from_scwrl_1395101115.pdb > /var/tmp/scwrl_1395101115.log Error: can't open any of /var/tmp/from_scwrl_1395101115.pdb or /var/tmp/from_scwrl_1395101115_b.pdb or /var/tmp/from_scwrl_1395101115_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_972665887.pdb -s /var/tmp/to_scwrl_972665887.seq -o /var/tmp/from_scwrl_972665887.pdb > /var/tmp/scwrl_972665887.log Error: can't open any of /var/tmp/from_scwrl_972665887.pdb or /var/tmp/from_scwrl_972665887_b.pdb or /var/tmp/from_scwrl_972665887_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_518291083.pdb -s /var/tmp/to_scwrl_518291083.seq -o /var/tmp/from_scwrl_518291083.pdb > /var/tmp/scwrl_518291083.log Error: can't open any of /var/tmp/from_scwrl_518291083.pdb or /var/tmp/from_scwrl_518291083_b.pdb or /var/tmp/from_scwrl_518291083_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 526 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2110301219.pdb -s /var/tmp/to_scwrl_2110301219.seq -o /var/tmp/from_scwrl_2110301219.pdb > /var/tmp/scwrl_2110301219.log Error: can't open any of /var/tmp/from_scwrl_2110301219.pdb or /var/tmp/from_scwrl_2110301219_b.pdb or /var/tmp/from_scwrl_2110301219_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1176170305.pdb -s /var/tmp/to_scwrl_1176170305.seq -o /var/tmp/from_scwrl_1176170305.pdb > /var/tmp/scwrl_1176170305.log Error: can't open any of /var/tmp/from_scwrl_1176170305.pdb or /var/tmp/from_scwrl_1176170305_b.pdb or /var/tmp/from_scwrl_1176170305_a.pdb Error: no new SCWRL conformation added # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2005928381.pdb -s /var/tmp/to_scwrl_2005928381.seq -o /var/tmp/from_scwrl_2005928381.pdb > /var/tmp/scwrl_2005928381.log Error: can't open any of /var/tmp/from_scwrl_2005928381.pdb or /var/tmp/from_scwrl_2005928381_b.pdb or /var/tmp/from_scwrl_2005928381_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_146857964.pdb -s /var/tmp/to_scwrl_146857964.seq -o /var/tmp/from_scwrl_146857964.pdb > /var/tmp/scwrl_146857964.log Error: can't open any of /var/tmp/from_scwrl_146857964.pdb or /var/tmp/from_scwrl_146857964_b.pdb or /var/tmp/from_scwrl_146857964_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_297365823.pdb -s /var/tmp/to_scwrl_297365823.seq -o /var/tmp/from_scwrl_297365823.pdb > /var/tmp/scwrl_297365823.log Error: can't open any of /var/tmp/from_scwrl_297365823.pdb or /var/tmp/from_scwrl_297365823_b.pdb or /var/tmp/from_scwrl_297365823_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_585402341.pdb -s /var/tmp/to_scwrl_585402341.seq -o /var/tmp/from_scwrl_585402341.pdb > /var/tmp/scwrl_585402341.log Error: can't open any of /var/tmp/from_scwrl_585402341.pdb or /var/tmp/from_scwrl_585402341_b.pdb or /var/tmp/from_scwrl_585402341_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2050808913.pdb -s /var/tmp/to_scwrl_2050808913.seq -o /var/tmp/from_scwrl_2050808913.pdb > /var/tmp/scwrl_2050808913.log Error: can't open any of /var/tmp/from_scwrl_2050808913.pdb or /var/tmp/from_scwrl_2050808913_b.pdb or /var/tmp/from_scwrl_2050808913_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_908023799.pdb -s /var/tmp/to_scwrl_908023799.seq -o /var/tmp/from_scwrl_908023799.pdb > /var/tmp/scwrl_908023799.log Error: can't open any of /var/tmp/from_scwrl_908023799.pdb or /var/tmp/from_scwrl_908023799_b.pdb or /var/tmp/from_scwrl_908023799_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_275373945.pdb -s /var/tmp/to_scwrl_275373945.seq -o /var/tmp/from_scwrl_275373945.pdb > /var/tmp/scwrl_275373945.log Error: can't open any of /var/tmp/from_scwrl_275373945.pdb or /var/tmp/from_scwrl_275373945_b.pdb or /var/tmp/from_scwrl_275373945_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_746651817.pdb -s /var/tmp/to_scwrl_746651817.seq -o /var/tmp/from_scwrl_746651817.pdb > /var/tmp/scwrl_746651817.log Error: can't open any of /var/tmp/from_scwrl_746651817.pdb or /var/tmp/from_scwrl_746651817_b.pdb or /var/tmp/from_scwrl_746651817_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1905779451.pdb -s /var/tmp/to_scwrl_1905779451.seq -o /var/tmp/from_scwrl_1905779451.pdb > /var/tmp/scwrl_1905779451.log Error: can't open any of /var/tmp/from_scwrl_1905779451.pdb or /var/tmp/from_scwrl_1905779451_b.pdb or /var/tmp/from_scwrl_1905779451_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_477473973.pdb -s /var/tmp/to_scwrl_477473973.seq -o /var/tmp/from_scwrl_477473973.pdb > /var/tmp/scwrl_477473973.log Error: can't open any of /var/tmp/from_scwrl_477473973.pdb or /var/tmp/from_scwrl_477473973_b.pdb or /var/tmp/from_scwrl_477473973_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1546031102.pdb -s /var/tmp/to_scwrl_1546031102.seq -o /var/tmp/from_scwrl_1546031102.pdb > /var/tmp/scwrl_1546031102.log Error: can't open any of /var/tmp/from_scwrl_1546031102.pdb or /var/tmp/from_scwrl_1546031102_b.pdb or /var/tmp/from_scwrl_1546031102_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1039431473.pdb -s /var/tmp/to_scwrl_1039431473.seq -o /var/tmp/from_scwrl_1039431473.pdb > /var/tmp/scwrl_1039431473.log Error: can't open any of /var/tmp/from_scwrl_1039431473.pdb or /var/tmp/from_scwrl_1039431473_b.pdb or /var/tmp/from_scwrl_1039431473_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_733207629.pdb -s /var/tmp/to_scwrl_733207629.seq -o /var/tmp/from_scwrl_733207629.pdb > /var/tmp/scwrl_733207629.log Error: can't open any of /var/tmp/from_scwrl_733207629.pdb or /var/tmp/from_scwrl_733207629_b.pdb or /var/tmp/from_scwrl_733207629_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_542962418.pdb -s /var/tmp/to_scwrl_542962418.seq -o /var/tmp/from_scwrl_542962418.pdb > /var/tmp/scwrl_542962418.log Error: can't open any of /var/tmp/from_scwrl_542962418.pdb or /var/tmp/from_scwrl_542962418_b.pdb or /var/tmp/from_scwrl_542962418_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_103302333.pdb -s /var/tmp/to_scwrl_103302333.seq -o /var/tmp/from_scwrl_103302333.pdb > /var/tmp/scwrl_103302333.log Error: can't open any of /var/tmp/from_scwrl_103302333.pdb or /var/tmp/from_scwrl_103302333_b.pdb or /var/tmp/from_scwrl_103302333_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1372101449.pdb -s /var/tmp/to_scwrl_1372101449.seq -o /var/tmp/from_scwrl_1372101449.pdb > /var/tmp/scwrl_1372101449.log Error: can't open any of /var/tmp/from_scwrl_1372101449.pdb or /var/tmp/from_scwrl_1372101449_b.pdb or /var/tmp/from_scwrl_1372101449_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_642493560.pdb -s /var/tmp/to_scwrl_642493560.seq -o /var/tmp/from_scwrl_642493560.pdb > /var/tmp/scwrl_642493560.log Error: can't open any of /var/tmp/from_scwrl_642493560.pdb or /var/tmp/from_scwrl_642493560_b.pdb or /var/tmp/from_scwrl_642493560_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 528 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_369230476.pdb -s /var/tmp/to_scwrl_369230476.seq -o /var/tmp/from_scwrl_369230476.pdb > /var/tmp/scwrl_369230476.log Error: can't open any of /var/tmp/from_scwrl_369230476.pdb or /var/tmp/from_scwrl_369230476_b.pdb or /var/tmp/from_scwrl_369230476_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1977790418.pdb -s /var/tmp/to_scwrl_1977790418.seq -o /var/tmp/from_scwrl_1977790418.pdb > /var/tmp/scwrl_1977790418.log Error: can't open any of /var/tmp/from_scwrl_1977790418.pdb or /var/tmp/from_scwrl_1977790418_b.pdb or /var/tmp/from_scwrl_1977790418_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_39307917.pdb -s /var/tmp/to_scwrl_39307917.seq -o /var/tmp/from_scwrl_39307917.pdb > /var/tmp/scwrl_39307917.log Error: can't open any of /var/tmp/from_scwrl_39307917.pdb or /var/tmp/from_scwrl_39307917_b.pdb or /var/tmp/from_scwrl_39307917_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 491 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_267362851.pdb -s /var/tmp/to_scwrl_267362851.seq -o /var/tmp/from_scwrl_267362851.pdb > /var/tmp/scwrl_267362851.log Error: can't open any of /var/tmp/from_scwrl_267362851.pdb or /var/tmp/from_scwrl_267362851_b.pdb or /var/tmp/from_scwrl_267362851_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 453 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_237072702.pdb -s /var/tmp/to_scwrl_237072702.seq -o /var/tmp/from_scwrl_237072702.pdb > /var/tmp/scwrl_237072702.log Error: can't open any of /var/tmp/from_scwrl_237072702.pdb or /var/tmp/from_scwrl_237072702_b.pdb or /var/tmp/from_scwrl_237072702_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 453 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1758830104.pdb -s /var/tmp/to_scwrl_1758830104.seq -o /var/tmp/from_scwrl_1758830104.pdb > /var/tmp/scwrl_1758830104.log Error: can't open any of /var/tmp/from_scwrl_1758830104.pdb or /var/tmp/from_scwrl_1758830104_b.pdb or /var/tmp/from_scwrl_1758830104_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 453 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_763772315.pdb -s /var/tmp/to_scwrl_763772315.seq -o /var/tmp/from_scwrl_763772315.pdb > /var/tmp/scwrl_763772315.log Error: can't open any of /var/tmp/from_scwrl_763772315.pdb or /var/tmp/from_scwrl_763772315_b.pdb or /var/tmp/from_scwrl_763772315_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 460 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1343999163.pdb -s /var/tmp/to_scwrl_1343999163.seq -o /var/tmp/from_scwrl_1343999163.pdb > /var/tmp/scwrl_1343999163.log Error: can't open any of /var/tmp/from_scwrl_1343999163.pdb or /var/tmp/from_scwrl_1343999163_b.pdb or /var/tmp/from_scwrl_1343999163_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1417807063.pdb -s /var/tmp/to_scwrl_1417807063.seq -o /var/tmp/from_scwrl_1417807063.pdb > /var/tmp/scwrl_1417807063.log Error: can't open any of /var/tmp/from_scwrl_1417807063.pdb or /var/tmp/from_scwrl_1417807063_b.pdb or /var/tmp/from_scwrl_1417807063_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_11389783.pdb -s /var/tmp/to_scwrl_11389783.seq -o /var/tmp/from_scwrl_11389783.pdb > /var/tmp/scwrl_11389783.log Error: can't open any of /var/tmp/from_scwrl_11389783.pdb or /var/tmp/from_scwrl_11389783_b.pdb or /var/tmp/from_scwrl_11389783_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_169181403.pdb -s /var/tmp/to_scwrl_169181403.seq -o /var/tmp/from_scwrl_169181403.pdb > /var/tmp/scwrl_169181403.log Error: can't open any of /var/tmp/from_scwrl_169181403.pdb or /var/tmp/from_scwrl_169181403_b.pdb or /var/tmp/from_scwrl_169181403_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1936098146.pdb -s /var/tmp/to_scwrl_1936098146.seq -o /var/tmp/from_scwrl_1936098146.pdb > /var/tmp/scwrl_1936098146.log Error: can't open any of /var/tmp/from_scwrl_1936098146.pdb or /var/tmp/from_scwrl_1936098146_b.pdb or /var/tmp/from_scwrl_1936098146_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2121691002.pdb -s /var/tmp/to_scwrl_2121691002.seq -o /var/tmp/from_scwrl_2121691002.pdb > /var/tmp/scwrl_2121691002.log Error: can't open any of /var/tmp/from_scwrl_2121691002.pdb or /var/tmp/from_scwrl_2121691002_b.pdb or /var/tmp/from_scwrl_2121691002_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1345351708.pdb -s /var/tmp/to_scwrl_1345351708.seq -o /var/tmp/from_scwrl_1345351708.pdb > /var/tmp/scwrl_1345351708.log Error: can't open any of /var/tmp/from_scwrl_1345351708.pdb or /var/tmp/from_scwrl_1345351708_b.pdb or /var/tmp/from_scwrl_1345351708_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1794542880.pdb -s /var/tmp/to_scwrl_1794542880.seq -o /var/tmp/from_scwrl_1794542880.pdb > /var/tmp/scwrl_1794542880.log Error: can't open any of /var/tmp/from_scwrl_1794542880.pdb or /var/tmp/from_scwrl_1794542880_b.pdb or /var/tmp/from_scwrl_1794542880_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_121065320.pdb -s /var/tmp/to_scwrl_121065320.seq -o /var/tmp/from_scwrl_121065320.pdb > /var/tmp/scwrl_121065320.log Error: can't open any of /var/tmp/from_scwrl_121065320.pdb or /var/tmp/from_scwrl_121065320_b.pdb or /var/tmp/from_scwrl_121065320_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1642717531.pdb -s /var/tmp/to_scwrl_1642717531.seq -o /var/tmp/from_scwrl_1642717531.pdb > /var/tmp/scwrl_1642717531.log Error: can't open any of /var/tmp/from_scwrl_1642717531.pdb or /var/tmp/from_scwrl_1642717531_b.pdb or /var/tmp/from_scwrl_1642717531_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_232461575.pdb -s /var/tmp/to_scwrl_232461575.seq -o /var/tmp/from_scwrl_232461575.pdb > /var/tmp/scwrl_232461575.log Error: can't open any of /var/tmp/from_scwrl_232461575.pdb or /var/tmp/from_scwrl_232461575_b.pdb or /var/tmp/from_scwrl_232461575_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_24390586.pdb -s /var/tmp/to_scwrl_24390586.seq -o /var/tmp/from_scwrl_24390586.pdb > /var/tmp/scwrl_24390586.log Error: can't open any of /var/tmp/from_scwrl_24390586.pdb or /var/tmp/from_scwrl_24390586_b.pdb or /var/tmp/from_scwrl_24390586_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 522 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_403257684.pdb -s /var/tmp/to_scwrl_403257684.seq -o /var/tmp/from_scwrl_403257684.pdb > /var/tmp/scwrl_403257684.log Error: can't open any of /var/tmp/from_scwrl_403257684.pdb or /var/tmp/from_scwrl_403257684_b.pdb or /var/tmp/from_scwrl_403257684_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_507835520.pdb -s /var/tmp/to_scwrl_507835520.seq -o /var/tmp/from_scwrl_507835520.pdb > /var/tmp/scwrl_507835520.log Error: can't open any of /var/tmp/from_scwrl_507835520.pdb or /var/tmp/from_scwrl_507835520_b.pdb or /var/tmp/from_scwrl_507835520_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_771042403.pdb -s /var/tmp/to_scwrl_771042403.seq -o /var/tmp/from_scwrl_771042403.pdb > /var/tmp/scwrl_771042403.log Error: can't open any of /var/tmp/from_scwrl_771042403.pdb or /var/tmp/from_scwrl_771042403_b.pdb or /var/tmp/from_scwrl_771042403_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 521 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_161553488.pdb -s /var/tmp/to_scwrl_161553488.seq -o /var/tmp/from_scwrl_161553488.pdb > /var/tmp/scwrl_161553488.log Error: can't open any of /var/tmp/from_scwrl_161553488.pdb or /var/tmp/from_scwrl_161553488_b.pdb or /var/tmp/from_scwrl_161553488_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_985309494.pdb -s /var/tmp/to_scwrl_985309494.seq -o /var/tmp/from_scwrl_985309494.pdb > /var/tmp/scwrl_985309494.log Error: can't open any of /var/tmp/from_scwrl_985309494.pdb or /var/tmp/from_scwrl_985309494_b.pdb or /var/tmp/from_scwrl_985309494_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_169589858.pdb -s /var/tmp/to_scwrl_169589858.seq -o /var/tmp/from_scwrl_169589858.pdb > /var/tmp/scwrl_169589858.log Error: can't open any of /var/tmp/from_scwrl_169589858.pdb or /var/tmp/from_scwrl_169589858_b.pdb or /var/tmp/from_scwrl_169589858_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1200984960.pdb -s /var/tmp/to_scwrl_1200984960.seq -o /var/tmp/from_scwrl_1200984960.pdb > /var/tmp/scwrl_1200984960.log Error: can't open any of /var/tmp/from_scwrl_1200984960.pdb or /var/tmp/from_scwrl_1200984960_b.pdb or /var/tmp/from_scwrl_1200984960_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1718517122.pdb -s /var/tmp/to_scwrl_1718517122.seq -o /var/tmp/from_scwrl_1718517122.pdb > /var/tmp/scwrl_1718517122.log Error: can't open any of /var/tmp/from_scwrl_1718517122.pdb or /var/tmp/from_scwrl_1718517122_b.pdb or /var/tmp/from_scwrl_1718517122_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_712552276.pdb -s /var/tmp/to_scwrl_712552276.seq -o /var/tmp/from_scwrl_712552276.pdb > /var/tmp/scwrl_712552276.log Error: can't open any of /var/tmp/from_scwrl_712552276.pdb or /var/tmp/from_scwrl_712552276_b.pdb or /var/tmp/from_scwrl_712552276_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1304287294.pdb -s /var/tmp/to_scwrl_1304287294.seq -o /var/tmp/from_scwrl_1304287294.pdb > /var/tmp/scwrl_1304287294.log Error: can't open any of /var/tmp/from_scwrl_1304287294.pdb or /var/tmp/from_scwrl_1304287294_b.pdb or /var/tmp/from_scwrl_1304287294_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_943134925.pdb -s /var/tmp/to_scwrl_943134925.seq -o /var/tmp/from_scwrl_943134925.pdb > /var/tmp/scwrl_943134925.log Error: can't open any of /var/tmp/from_scwrl_943134925.pdb or /var/tmp/from_scwrl_943134925_b.pdb or /var/tmp/from_scwrl_943134925_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1355045836.pdb -s /var/tmp/to_scwrl_1355045836.seq -o /var/tmp/from_scwrl_1355045836.pdb > /var/tmp/scwrl_1355045836.log Error: can't open any of /var/tmp/from_scwrl_1355045836.pdb or /var/tmp/from_scwrl_1355045836_b.pdb or /var/tmp/from_scwrl_1355045836_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1673517770.pdb -s /var/tmp/to_scwrl_1673517770.seq -o /var/tmp/from_scwrl_1673517770.pdb > /var/tmp/scwrl_1673517770.log Error: can't open any of /var/tmp/from_scwrl_1673517770.pdb or /var/tmp/from_scwrl_1673517770_b.pdb or /var/tmp/from_scwrl_1673517770_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_773441696.pdb -s /var/tmp/to_scwrl_773441696.seq -o /var/tmp/from_scwrl_773441696.pdb > /var/tmp/scwrl_773441696.log Error: can't open any of /var/tmp/from_scwrl_773441696.pdb or /var/tmp/from_scwrl_773441696_b.pdb or /var/tmp/from_scwrl_773441696_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1394353753.pdb -s /var/tmp/to_scwrl_1394353753.seq -o /var/tmp/from_scwrl_1394353753.pdb > /var/tmp/scwrl_1394353753.log Error: can't open any of /var/tmp/from_scwrl_1394353753.pdb or /var/tmp/from_scwrl_1394353753_b.pdb or /var/tmp/from_scwrl_1394353753_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1940880621.pdb -s /var/tmp/to_scwrl_1940880621.seq -o /var/tmp/from_scwrl_1940880621.pdb > /var/tmp/scwrl_1940880621.log Error: can't open any of /var/tmp/from_scwrl_1940880621.pdb or /var/tmp/from_scwrl_1940880621_b.pdb or /var/tmp/from_scwrl_1940880621_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1010514398.pdb -s /var/tmp/to_scwrl_1010514398.seq -o /var/tmp/from_scwrl_1010514398.pdb > /var/tmp/scwrl_1010514398.log Error: can't open any of /var/tmp/from_scwrl_1010514398.pdb or /var/tmp/from_scwrl_1010514398_b.pdb or /var/tmp/from_scwrl_1010514398_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 528 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1005700211.pdb -s /var/tmp/to_scwrl_1005700211.seq -o /var/tmp/from_scwrl_1005700211.pdb > /var/tmp/scwrl_1005700211.log Error: can't open any of /var/tmp/from_scwrl_1005700211.pdb or /var/tmp/from_scwrl_1005700211_b.pdb or /var/tmp/from_scwrl_1005700211_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_557169289.pdb -s /var/tmp/to_scwrl_557169289.seq -o /var/tmp/from_scwrl_557169289.pdb > /var/tmp/scwrl_557169289.log Error: can't open any of /var/tmp/from_scwrl_557169289.pdb or /var/tmp/from_scwrl_557169289_b.pdb or /var/tmp/from_scwrl_557169289_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_207029914.pdb -s /var/tmp/to_scwrl_207029914.seq -o /var/tmp/from_scwrl_207029914.pdb > /var/tmp/scwrl_207029914.log Error: can't open any of /var/tmp/from_scwrl_207029914.pdb or /var/tmp/from_scwrl_207029914_b.pdb or /var/tmp/from_scwrl_207029914_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 527 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_276023627.pdb -s /var/tmp/to_scwrl_276023627.seq -o /var/tmp/from_scwrl_276023627.pdb > /var/tmp/scwrl_276023627.log Error: can't open any of /var/tmp/from_scwrl_276023627.pdb or /var/tmp/from_scwrl_276023627_b.pdb or /var/tmp/from_scwrl_276023627_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 447 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_568559072.pdb -s /var/tmp/to_scwrl_568559072.seq -o /var/tmp/from_scwrl_568559072.pdb > /var/tmp/scwrl_568559072.log Error: can't open any of /var/tmp/from_scwrl_568559072.pdb or /var/tmp/from_scwrl_568559072_b.pdb or /var/tmp/from_scwrl_568559072_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_376211318.pdb -s /var/tmp/to_scwrl_376211318.seq -o /var/tmp/from_scwrl_376211318.pdb > /var/tmp/scwrl_376211318.log Error: can't open any of /var/tmp/from_scwrl_376211318.pdb or /var/tmp/from_scwrl_376211318_b.pdb or /var/tmp/from_scwrl_376211318_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 502 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_64638126.pdb -s /var/tmp/to_scwrl_64638126.seq -o /var/tmp/from_scwrl_64638126.pdb > /var/tmp/scwrl_64638126.log Error: can't open any of /var/tmp/from_scwrl_64638126.pdb or /var/tmp/from_scwrl_64638126_b.pdb or /var/tmp/from_scwrl_64638126_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 519 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_542766428.pdb -s /var/tmp/to_scwrl_542766428.seq -o /var/tmp/from_scwrl_542766428.pdb > /var/tmp/scwrl_542766428.log Error: can't open any of /var/tmp/from_scwrl_542766428.pdb or /var/tmp/from_scwrl_542766428_b.pdb or /var/tmp/from_scwrl_542766428_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 519 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1721563026.pdb -s /var/tmp/to_scwrl_1721563026.seq -o /var/tmp/from_scwrl_1721563026.pdb > /var/tmp/scwrl_1721563026.log Error: can't open any of /var/tmp/from_scwrl_1721563026.pdb or /var/tmp/from_scwrl_1721563026_b.pdb or /var/tmp/from_scwrl_1721563026_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 519 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1859181006.pdb -s /var/tmp/to_scwrl_1859181006.seq -o /var/tmp/from_scwrl_1859181006.pdb > /var/tmp/scwrl_1859181006.log Error: can't open any of /var/tmp/from_scwrl_1859181006.pdb or /var/tmp/from_scwrl_1859181006_b.pdb or /var/tmp/from_scwrl_1859181006_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_663831748.pdb -s /var/tmp/to_scwrl_663831748.seq -o /var/tmp/from_scwrl_663831748.pdb > /var/tmp/scwrl_663831748.log Error: can't open any of /var/tmp/from_scwrl_663831748.pdb or /var/tmp/from_scwrl_663831748_b.pdb or /var/tmp/from_scwrl_663831748_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1216796911.pdb -s /var/tmp/to_scwrl_1216796911.seq -o /var/tmp/from_scwrl_1216796911.pdb > /var/tmp/scwrl_1216796911.log Error: can't open any of /var/tmp/from_scwrl_1216796911.pdb or /var/tmp/from_scwrl_1216796911_b.pdb or /var/tmp/from_scwrl_1216796911_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2091642581.pdb -s /var/tmp/to_scwrl_2091642581.seq -o /var/tmp/from_scwrl_2091642581.pdb > /var/tmp/scwrl_2091642581.log Error: can't open any of /var/tmp/from_scwrl_2091642581.pdb or /var/tmp/from_scwrl_2091642581_b.pdb or /var/tmp/from_scwrl_2091642581_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_688222334.pdb -s /var/tmp/to_scwrl_688222334.seq -o /var/tmp/from_scwrl_688222334.pdb > /var/tmp/scwrl_688222334.log Error: can't open any of /var/tmp/from_scwrl_688222334.pdb or /var/tmp/from_scwrl_688222334_b.pdb or /var/tmp/from_scwrl_688222334_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1620054595.pdb -s /var/tmp/to_scwrl_1620054595.seq -o /var/tmp/from_scwrl_1620054595.pdb > /var/tmp/scwrl_1620054595.log Error: can't open any of /var/tmp/from_scwrl_1620054595.pdb or /var/tmp/from_scwrl_1620054595_b.pdb or /var/tmp/from_scwrl_1620054595_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_451994455.pdb -s /var/tmp/to_scwrl_451994455.seq -o /var/tmp/from_scwrl_451994455.pdb > /var/tmp/scwrl_451994455.log Error: can't open any of /var/tmp/from_scwrl_451994455.pdb or /var/tmp/from_scwrl_451994455_b.pdb or /var/tmp/from_scwrl_451994455_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1459264737.pdb -s /var/tmp/to_scwrl_1459264737.seq -o /var/tmp/from_scwrl_1459264737.pdb > /var/tmp/scwrl_1459264737.log Error: can't open any of /var/tmp/from_scwrl_1459264737.pdb or /var/tmp/from_scwrl_1459264737_b.pdb or /var/tmp/from_scwrl_1459264737_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1781608083.pdb -s /var/tmp/to_scwrl_1781608083.seq -o /var/tmp/from_scwrl_1781608083.pdb > /var/tmp/scwrl_1781608083.log Error: can't open any of /var/tmp/from_scwrl_1781608083.pdb or /var/tmp/from_scwrl_1781608083_b.pdb or /var/tmp/from_scwrl_1781608083_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1437303948.pdb -s /var/tmp/to_scwrl_1437303948.seq -o /var/tmp/from_scwrl_1437303948.pdb > /var/tmp/scwrl_1437303948.log Error: can't open any of /var/tmp/from_scwrl_1437303948.pdb or /var/tmp/from_scwrl_1437303948_b.pdb or /var/tmp/from_scwrl_1437303948_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1628854595.pdb -s /var/tmp/to_scwrl_1628854595.seq -o /var/tmp/from_scwrl_1628854595.pdb > /var/tmp/scwrl_1628854595.log Error: can't open any of /var/tmp/from_scwrl_1628854595.pdb or /var/tmp/from_scwrl_1628854595_b.pdb or /var/tmp/from_scwrl_1628854595_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 519 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_835109397.pdb -s /var/tmp/to_scwrl_835109397.seq -o /var/tmp/from_scwrl_835109397.pdb > /var/tmp/scwrl_835109397.log Error: can't open any of /var/tmp/from_scwrl_835109397.pdb or /var/tmp/from_scwrl_835109397_b.pdb or /var/tmp/from_scwrl_835109397_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 517 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1008337424.pdb -s /var/tmp/to_scwrl_1008337424.seq -o /var/tmp/from_scwrl_1008337424.pdb > /var/tmp/scwrl_1008337424.log Error: can't open any of /var/tmp/from_scwrl_1008337424.pdb or /var/tmp/from_scwrl_1008337424_b.pdb or /var/tmp/from_scwrl_1008337424_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 527 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_193923225.pdb -s /var/tmp/to_scwrl_193923225.seq -o /var/tmp/from_scwrl_193923225.pdb > /var/tmp/scwrl_193923225.log Error: can't open any of /var/tmp/from_scwrl_193923225.pdb or /var/tmp/from_scwrl_193923225_b.pdb or /var/tmp/from_scwrl_193923225_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2139396691.pdb -s /var/tmp/to_scwrl_2139396691.seq -o /var/tmp/from_scwrl_2139396691.pdb > /var/tmp/scwrl_2139396691.log Error: can't open any of /var/tmp/from_scwrl_2139396691.pdb or /var/tmp/from_scwrl_2139396691_b.pdb or /var/tmp/from_scwrl_2139396691_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 520 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1951472348.pdb -s /var/tmp/to_scwrl_1951472348.seq -o /var/tmp/from_scwrl_1951472348.pdb > /var/tmp/scwrl_1951472348.log Error: can't open any of /var/tmp/from_scwrl_1951472348.pdb or /var/tmp/from_scwrl_1951472348_b.pdb or /var/tmp/from_scwrl_1951472348_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 519 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1548969061.pdb -s /var/tmp/to_scwrl_1548969061.seq -o /var/tmp/from_scwrl_1548969061.pdb > /var/tmp/scwrl_1548969061.log Error: can't open any of /var/tmp/from_scwrl_1548969061.pdb or /var/tmp/from_scwrl_1548969061_b.pdb or /var/tmp/from_scwrl_1548969061_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 446 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1665430814.pdb -s /var/tmp/to_scwrl_1665430814.seq -o /var/tmp/from_scwrl_1665430814.pdb > /var/tmp/scwrl_1665430814.log Error: can't open any of /var/tmp/from_scwrl_1665430814.pdb or /var/tmp/from_scwrl_1665430814_b.pdb or /var/tmp/from_scwrl_1665430814_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 522 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_577430397.pdb -s /var/tmp/to_scwrl_577430397.seq -o /var/tmp/from_scwrl_577430397.pdb > /var/tmp/scwrl_577430397.log Error: can't open any of /var/tmp/from_scwrl_577430397.pdb or /var/tmp/from_scwrl_577430397_b.pdb or /var/tmp/from_scwrl_577430397_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 525 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_795839168.pdb -s /var/tmp/to_scwrl_795839168.seq -o /var/tmp/from_scwrl_795839168.pdb > /var/tmp/scwrl_795839168.log Error: can't open any of /var/tmp/from_scwrl_795839168.pdb or /var/tmp/from_scwrl_795839168_b.pdb or /var/tmp/from_scwrl_795839168_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 519 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1458827789.pdb -s /var/tmp/to_scwrl_1458827789.seq -o /var/tmp/from_scwrl_1458827789.pdb > /var/tmp/scwrl_1458827789.log Error: can't open any of /var/tmp/from_scwrl_1458827789.pdb or /var/tmp/from_scwrl_1458827789_b.pdb or /var/tmp/from_scwrl_1458827789_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 528 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1587944794.pdb -s /var/tmp/to_scwrl_1587944794.seq -o /var/tmp/from_scwrl_1587944794.pdb > /var/tmp/scwrl_1587944794.log Error: can't open any of /var/tmp/from_scwrl_1587944794.pdb or /var/tmp/from_scwrl_1587944794_b.pdb or /var/tmp/from_scwrl_1587944794_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1801539378.pdb -s /var/tmp/to_scwrl_1801539378.seq -o /var/tmp/from_scwrl_1801539378.pdb > /var/tmp/scwrl_1801539378.log Error: can't open any of /var/tmp/from_scwrl_1801539378.pdb or /var/tmp/from_scwrl_1801539378_b.pdb or /var/tmp/from_scwrl_1801539378_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2015997078.pdb -s /var/tmp/to_scwrl_2015997078.seq -o /var/tmp/from_scwrl_2015997078.pdb > /var/tmp/scwrl_2015997078.log Error: can't open any of /var/tmp/from_scwrl_2015997078.pdb or /var/tmp/from_scwrl_2015997078_b.pdb or /var/tmp/from_scwrl_2015997078_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1794974708.pdb -s /var/tmp/to_scwrl_1794974708.seq -o /var/tmp/from_scwrl_1794974708.pdb > /var/tmp/scwrl_1794974708.log Error: can't open any of /var/tmp/from_scwrl_1794974708.pdb or /var/tmp/from_scwrl_1794974708_b.pdb or /var/tmp/from_scwrl_1794974708_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2077563005.pdb -s /var/tmp/to_scwrl_2077563005.seq -o /var/tmp/from_scwrl_2077563005.pdb > /var/tmp/scwrl_2077563005.log Error: can't open any of /var/tmp/from_scwrl_2077563005.pdb or /var/tmp/from_scwrl_2077563005_b.pdb or /var/tmp/from_scwrl_2077563005_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 479 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_437072504.pdb -s /var/tmp/to_scwrl_437072504.seq -o /var/tmp/from_scwrl_437072504.pdb > /var/tmp/scwrl_437072504.log Error: can't open any of /var/tmp/from_scwrl_437072504.pdb or /var/tmp/from_scwrl_437072504_b.pdb or /var/tmp/from_scwrl_437072504_a.pdb Error: no new SCWRL conformation added # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_23702379.pdb -s /var/tmp/to_scwrl_23702379.seq -o /var/tmp/from_scwrl_23702379.pdb > /var/tmp/scwrl_23702379.log Error: can't open any of /var/tmp/from_scwrl_23702379.pdb or /var/tmp/from_scwrl_23702379_b.pdb or /var/tmp/from_scwrl_23702379_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2142201131.pdb -s /var/tmp/to_scwrl_2142201131.seq -o /var/tmp/from_scwrl_2142201131.pdb > /var/tmp/scwrl_2142201131.log Error: can't open any of /var/tmp/from_scwrl_2142201131.pdb or /var/tmp/from_scwrl_2142201131_b.pdb or /var/tmp/from_scwrl_2142201131_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_979838932.pdb -s /var/tmp/to_scwrl_979838932.seq -o /var/tmp/from_scwrl_979838932.pdb > /var/tmp/scwrl_979838932.log Error: can't open any of /var/tmp/from_scwrl_979838932.pdb or /var/tmp/from_scwrl_979838932_b.pdb or /var/tmp/from_scwrl_979838932_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1745265406.pdb -s /var/tmp/to_scwrl_1745265406.seq -o /var/tmp/from_scwrl_1745265406.pdb > /var/tmp/scwrl_1745265406.log Error: can't open any of /var/tmp/from_scwrl_1745265406.pdb or /var/tmp/from_scwrl_1745265406_b.pdb or /var/tmp/from_scwrl_1745265406_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1853898490.pdb -s /var/tmp/to_scwrl_1853898490.seq -o /var/tmp/from_scwrl_1853898490.pdb > /var/tmp/scwrl_1853898490.log Error: can't open any of /var/tmp/from_scwrl_1853898490.pdb or /var/tmp/from_scwrl_1853898490_b.pdb or /var/tmp/from_scwrl_1853898490_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 517 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1643670679.pdb -s /var/tmp/to_scwrl_1643670679.seq -o /var/tmp/from_scwrl_1643670679.pdb > /var/tmp/scwrl_1643670679.log Error: can't open any of /var/tmp/from_scwrl_1643670679.pdb or /var/tmp/from_scwrl_1643670679_b.pdb or /var/tmp/from_scwrl_1643670679_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 517 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_814578671.pdb -s /var/tmp/to_scwrl_814578671.seq -o /var/tmp/from_scwrl_814578671.pdb > /var/tmp/scwrl_814578671.log Error: can't open any of /var/tmp/from_scwrl_814578671.pdb or /var/tmp/from_scwrl_814578671_b.pdb or /var/tmp/from_scwrl_814578671_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 449 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1798057425.pdb -s /var/tmp/to_scwrl_1798057425.seq -o /var/tmp/from_scwrl_1798057425.pdb > /var/tmp/scwrl_1798057425.log Error: can't open any of /var/tmp/from_scwrl_1798057425.pdb or /var/tmp/from_scwrl_1798057425_b.pdb or /var/tmp/from_scwrl_1798057425_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 484 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_184409366.pdb -s /var/tmp/to_scwrl_184409366.seq -o /var/tmp/from_scwrl_184409366.pdb > /var/tmp/scwrl_184409366.log Error: can't open any of /var/tmp/from_scwrl_184409366.pdb or /var/tmp/from_scwrl_184409366_b.pdb or /var/tmp/from_scwrl_184409366_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 517 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_287149619.pdb -s /var/tmp/to_scwrl_287149619.seq -o /var/tmp/from_scwrl_287149619.pdb > /var/tmp/scwrl_287149619.log Error: can't open any of /var/tmp/from_scwrl_287149619.pdb or /var/tmp/from_scwrl_287149619_b.pdb or /var/tmp/from_scwrl_287149619_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_102568233.pdb -s /var/tmp/to_scwrl_102568233.seq -o /var/tmp/from_scwrl_102568233.pdb > /var/tmp/scwrl_102568233.log Error: can't open any of /var/tmp/from_scwrl_102568233.pdb or /var/tmp/from_scwrl_102568233_b.pdb or /var/tmp/from_scwrl_102568233_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1643674103.pdb -s /var/tmp/to_scwrl_1643674103.seq -o /var/tmp/from_scwrl_1643674103.pdb > /var/tmp/scwrl_1643674103.log Error: can't open any of /var/tmp/from_scwrl_1643674103.pdb or /var/tmp/from_scwrl_1643674103_b.pdb or /var/tmp/from_scwrl_1643674103_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2068757702.pdb -s /var/tmp/to_scwrl_2068757702.seq -o /var/tmp/from_scwrl_2068757702.pdb > /var/tmp/scwrl_2068757702.log Error: can't open any of /var/tmp/from_scwrl_2068757702.pdb or /var/tmp/from_scwrl_2068757702_b.pdb or /var/tmp/from_scwrl_2068757702_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1539872181.pdb -s /var/tmp/to_scwrl_1539872181.seq -o /var/tmp/from_scwrl_1539872181.pdb > /var/tmp/scwrl_1539872181.log Error: can't open any of /var/tmp/from_scwrl_1539872181.pdb or /var/tmp/from_scwrl_1539872181_b.pdb or /var/tmp/from_scwrl_1539872181_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1125045052.pdb -s /var/tmp/to_scwrl_1125045052.seq -o /var/tmp/from_scwrl_1125045052.pdb > /var/tmp/scwrl_1125045052.log Error: can't open any of /var/tmp/from_scwrl_1125045052.pdb or /var/tmp/from_scwrl_1125045052_b.pdb or /var/tmp/from_scwrl_1125045052_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_756383452.pdb -s /var/tmp/to_scwrl_756383452.seq -o /var/tmp/from_scwrl_756383452.pdb > /var/tmp/scwrl_756383452.log Error: can't open any of /var/tmp/from_scwrl_756383452.pdb or /var/tmp/from_scwrl_756383452_b.pdb or /var/tmp/from_scwrl_756383452_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 527 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_400725958.pdb -s /var/tmp/to_scwrl_400725958.seq -o /var/tmp/from_scwrl_400725958.pdb > /var/tmp/scwrl_400725958.log Error: can't open any of /var/tmp/from_scwrl_400725958.pdb or /var/tmp/from_scwrl_400725958_b.pdb or /var/tmp/from_scwrl_400725958_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 527 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1318968277.pdb -s /var/tmp/to_scwrl_1318968277.seq -o /var/tmp/from_scwrl_1318968277.pdb > /var/tmp/scwrl_1318968277.log Error: can't open any of /var/tmp/from_scwrl_1318968277.pdb or /var/tmp/from_scwrl_1318968277_b.pdb or /var/tmp/from_scwrl_1318968277_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_748296497.pdb -s /var/tmp/to_scwrl_748296497.seq -o /var/tmp/from_scwrl_748296497.pdb > /var/tmp/scwrl_748296497.log Error: can't open any of /var/tmp/from_scwrl_748296497.pdb or /var/tmp/from_scwrl_748296497_b.pdb or /var/tmp/from_scwrl_748296497_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_204714659.pdb -s /var/tmp/to_scwrl_204714659.seq -o /var/tmp/from_scwrl_204714659.pdb > /var/tmp/scwrl_204714659.log Error: can't open any of /var/tmp/from_scwrl_204714659.pdb or /var/tmp/from_scwrl_204714659_b.pdb or /var/tmp/from_scwrl_204714659_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_720453692.pdb -s /var/tmp/to_scwrl_720453692.seq -o /var/tmp/from_scwrl_720453692.pdb > /var/tmp/scwrl_720453692.log Error: can't open any of /var/tmp/from_scwrl_720453692.pdb or /var/tmp/from_scwrl_720453692_b.pdb or /var/tmp/from_scwrl_720453692_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # Found a chain break before 527 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_266243664.pdb -s /var/tmp/to_scwrl_266243664.seq -o /var/tmp/from_scwrl_266243664.pdb > /var/tmp/scwrl_266243664.log Error: can't open any of /var/tmp/from_scwrl_266243664.pdb or /var/tmp/from_scwrl_266243664_b.pdb or /var/tmp/from_scwrl_266243664_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_782145056.pdb -s /var/tmp/to_scwrl_782145056.seq -o /var/tmp/from_scwrl_782145056.pdb > /var/tmp/scwrl_782145056.log Error: can't open any of /var/tmp/from_scwrl_782145056.pdb or /var/tmp/from_scwrl_782145056_b.pdb or /var/tmp/from_scwrl_782145056_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # Found a chain break before 527 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1516292859.pdb -s /var/tmp/to_scwrl_1516292859.seq -o /var/tmp/from_scwrl_1516292859.pdb > /var/tmp/scwrl_1516292859.log Error: can't open any of /var/tmp/from_scwrl_1516292859.pdb or /var/tmp/from_scwrl_1516292859_b.pdb or /var/tmp/from_scwrl_1516292859_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 457 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1725071453.pdb -s /var/tmp/to_scwrl_1725071453.seq -o /var/tmp/from_scwrl_1725071453.pdb > /var/tmp/scwrl_1725071453.log Error: can't open any of /var/tmp/from_scwrl_1725071453.pdb or /var/tmp/from_scwrl_1725071453_b.pdb or /var/tmp/from_scwrl_1725071453_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 457 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_222606203.pdb -s /var/tmp/to_scwrl_222606203.seq -o /var/tmp/from_scwrl_222606203.pdb > /var/tmp/scwrl_222606203.log Error: can't open any of /var/tmp/from_scwrl_222606203.pdb or /var/tmp/from_scwrl_222606203_b.pdb or /var/tmp/from_scwrl_222606203_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 423 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1170348590.pdb -s /var/tmp/to_scwrl_1170348590.seq -o /var/tmp/from_scwrl_1170348590.pdb > /var/tmp/scwrl_1170348590.log Error: can't open any of /var/tmp/from_scwrl_1170348590.pdb or /var/tmp/from_scwrl_1170348590_b.pdb or /var/tmp/from_scwrl_1170348590_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 446 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1593584885.pdb -s /var/tmp/to_scwrl_1593584885.seq -o /var/tmp/from_scwrl_1593584885.pdb > /var/tmp/scwrl_1593584885.log Error: can't open any of /var/tmp/from_scwrl_1593584885.pdb or /var/tmp/from_scwrl_1593584885_b.pdb or /var/tmp/from_scwrl_1593584885_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 447 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2017580911.pdb -s /var/tmp/to_scwrl_2017580911.seq -o /var/tmp/from_scwrl_2017580911.pdb > /var/tmp/scwrl_2017580911.log Error: can't open any of /var/tmp/from_scwrl_2017580911.pdb or /var/tmp/from_scwrl_2017580911_b.pdb or /var/tmp/from_scwrl_2017580911_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 447 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1100427948.pdb -s /var/tmp/to_scwrl_1100427948.seq -o /var/tmp/from_scwrl_1100427948.pdb > /var/tmp/scwrl_1100427948.log Error: can't open any of /var/tmp/from_scwrl_1100427948.pdb or /var/tmp/from_scwrl_1100427948_b.pdb or /var/tmp/from_scwrl_1100427948_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 466 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2030657389.pdb -s /var/tmp/to_scwrl_2030657389.seq -o /var/tmp/from_scwrl_2030657389.pdb > /var/tmp/scwrl_2030657389.log Error: can't open any of /var/tmp/from_scwrl_2030657389.pdb or /var/tmp/from_scwrl_2030657389_b.pdb or /var/tmp/from_scwrl_2030657389_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 484 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2041283291.pdb -s /var/tmp/to_scwrl_2041283291.seq -o /var/tmp/from_scwrl_2041283291.pdb > /var/tmp/scwrl_2041283291.log Error: can't open any of /var/tmp/from_scwrl_2041283291.pdb or /var/tmp/from_scwrl_2041283291_b.pdb or /var/tmp/from_scwrl_2041283291_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 484 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1095145432.pdb -s /var/tmp/to_scwrl_1095145432.seq -o /var/tmp/from_scwrl_1095145432.pdb > /var/tmp/scwrl_1095145432.log Error: can't open any of /var/tmp/from_scwrl_1095145432.pdb or /var/tmp/from_scwrl_1095145432_b.pdb or /var/tmp/from_scwrl_1095145432_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 522 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_863012674.pdb -s /var/tmp/to_scwrl_863012674.seq -o /var/tmp/from_scwrl_863012674.pdb > /var/tmp/scwrl_863012674.log Error: can't open any of /var/tmp/from_scwrl_863012674.pdb or /var/tmp/from_scwrl_863012674_b.pdb or /var/tmp/from_scwrl_863012674_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 526 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1639065050.pdb -s /var/tmp/to_scwrl_1639065050.seq -o /var/tmp/from_scwrl_1639065050.pdb > /var/tmp/scwrl_1639065050.log Error: can't open any of /var/tmp/from_scwrl_1639065050.pdb or /var/tmp/from_scwrl_1639065050_b.pdb or /var/tmp/from_scwrl_1639065050_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 524 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_801560276.pdb -s /var/tmp/to_scwrl_801560276.seq -o /var/tmp/from_scwrl_801560276.pdb > /var/tmp/scwrl_801560276.log Error: can't open any of /var/tmp/from_scwrl_801560276.pdb or /var/tmp/from_scwrl_801560276_b.pdb or /var/tmp/from_scwrl_801560276_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 491 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_359199706.pdb -s /var/tmp/to_scwrl_359199706.seq -o /var/tmp/from_scwrl_359199706.pdb > /var/tmp/scwrl_359199706.log Error: can't open any of /var/tmp/from_scwrl_359199706.pdb or /var/tmp/from_scwrl_359199706_b.pdb or /var/tmp/from_scwrl_359199706_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 521 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_306160074.pdb -s /var/tmp/to_scwrl_306160074.seq -o /var/tmp/from_scwrl_306160074.pdb > /var/tmp/scwrl_306160074.log Error: can't open any of /var/tmp/from_scwrl_306160074.pdb or /var/tmp/from_scwrl_306160074_b.pdb or /var/tmp/from_scwrl_306160074_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_452134054.pdb -s /var/tmp/to_scwrl_452134054.seq -o /var/tmp/from_scwrl_452134054.pdb > /var/tmp/scwrl_452134054.log Error: can't open any of /var/tmp/from_scwrl_452134054.pdb or /var/tmp/from_scwrl_452134054_b.pdb or /var/tmp/from_scwrl_452134054_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 519 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_543609072.pdb -s /var/tmp/to_scwrl_543609072.seq -o /var/tmp/from_scwrl_543609072.pdb > /var/tmp/scwrl_543609072.log Error: can't open any of /var/tmp/from_scwrl_543609072.pdb or /var/tmp/from_scwrl_543609072_b.pdb or /var/tmp/from_scwrl_543609072_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 519 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_593309693.pdb -s /var/tmp/to_scwrl_593309693.seq -o /var/tmp/from_scwrl_593309693.pdb > /var/tmp/scwrl_593309693.log Error: can't open any of /var/tmp/from_scwrl_593309693.pdb or /var/tmp/from_scwrl_593309693_b.pdb or /var/tmp/from_scwrl_593309693_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 527 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_554702287.pdb -s /var/tmp/to_scwrl_554702287.seq -o /var/tmp/from_scwrl_554702287.pdb > /var/tmp/scwrl_554702287.log Error: can't open any of /var/tmp/from_scwrl_554702287.pdb or /var/tmp/from_scwrl_554702287_b.pdb or /var/tmp/from_scwrl_554702287_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 527 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_39799529.pdb -s /var/tmp/to_scwrl_39799529.seq -o /var/tmp/from_scwrl_39799529.pdb > /var/tmp/scwrl_39799529.log Error: can't open any of /var/tmp/from_scwrl_39799529.pdb or /var/tmp/from_scwrl_39799529_b.pdb or /var/tmp/from_scwrl_39799529_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 527 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_514583748.pdb -s /var/tmp/to_scwrl_514583748.seq -o /var/tmp/from_scwrl_514583748.pdb > /var/tmp/scwrl_514583748.log Error: can't open any of /var/tmp/from_scwrl_514583748.pdb or /var/tmp/from_scwrl_514583748_b.pdb or /var/tmp/from_scwrl_514583748_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 457 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2094574468.pdb -s /var/tmp/to_scwrl_2094574468.seq -o /var/tmp/from_scwrl_2094574468.pdb > /var/tmp/scwrl_2094574468.log Error: can't open any of /var/tmp/from_scwrl_2094574468.pdb or /var/tmp/from_scwrl_2094574468_b.pdb or /var/tmp/from_scwrl_2094574468_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 457 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1164844581.pdb -s /var/tmp/to_scwrl_1164844581.seq -o /var/tmp/from_scwrl_1164844581.pdb > /var/tmp/scwrl_1164844581.log Error: can't open any of /var/tmp/from_scwrl_1164844581.pdb or /var/tmp/from_scwrl_1164844581_b.pdb or /var/tmp/from_scwrl_1164844581_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 527 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1270967199.pdb -s /var/tmp/to_scwrl_1270967199.seq -o /var/tmp/from_scwrl_1270967199.pdb > /var/tmp/scwrl_1270967199.log Error: can't open any of /var/tmp/from_scwrl_1270967199.pdb or /var/tmp/from_scwrl_1270967199_b.pdb or /var/tmp/from_scwrl_1270967199_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_347816779.pdb -s /var/tmp/to_scwrl_347816779.seq -o /var/tmp/from_scwrl_347816779.pdb > /var/tmp/scwrl_347816779.log Error: can't open any of /var/tmp/from_scwrl_347816779.pdb or /var/tmp/from_scwrl_347816779_b.pdb or /var/tmp/from_scwrl_347816779_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_336329212.pdb -s /var/tmp/to_scwrl_336329212.seq -o /var/tmp/from_scwrl_336329212.pdb > /var/tmp/scwrl_336329212.log Error: can't open any of /var/tmp/from_scwrl_336329212.pdb or /var/tmp/from_scwrl_336329212_b.pdb or /var/tmp/from_scwrl_336329212_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2019263696.pdb -s /var/tmp/to_scwrl_2019263696.seq -o /var/tmp/from_scwrl_2019263696.pdb > /var/tmp/scwrl_2019263696.log Error: can't open any of /var/tmp/from_scwrl_2019263696.pdb or /var/tmp/from_scwrl_2019263696_b.pdb or /var/tmp/from_scwrl_2019263696_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_552531438.pdb -s /var/tmp/to_scwrl_552531438.seq -o /var/tmp/from_scwrl_552531438.pdb > /var/tmp/scwrl_552531438.log Error: can't open any of /var/tmp/from_scwrl_552531438.pdb or /var/tmp/from_scwrl_552531438_b.pdb or /var/tmp/from_scwrl_552531438_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1056782904.pdb -s /var/tmp/to_scwrl_1056782904.seq -o /var/tmp/from_scwrl_1056782904.pdb > /var/tmp/scwrl_1056782904.log Error: can't open any of /var/tmp/from_scwrl_1056782904.pdb or /var/tmp/from_scwrl_1056782904_b.pdb or /var/tmp/from_scwrl_1056782904_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_138023714.pdb -s /var/tmp/to_scwrl_138023714.seq -o /var/tmp/from_scwrl_138023714.pdb > /var/tmp/scwrl_138023714.log Error: can't open any of /var/tmp/from_scwrl_138023714.pdb or /var/tmp/from_scwrl_138023714_b.pdb or /var/tmp/from_scwrl_138023714_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1334676493.pdb -s /var/tmp/to_scwrl_1334676493.seq -o /var/tmp/from_scwrl_1334676493.pdb > /var/tmp/scwrl_1334676493.log Error: can't open any of /var/tmp/from_scwrl_1334676493.pdb or /var/tmp/from_scwrl_1334676493_b.pdb or /var/tmp/from_scwrl_1334676493_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_425592116.pdb -s /var/tmp/to_scwrl_425592116.seq -o /var/tmp/from_scwrl_425592116.pdb > /var/tmp/scwrl_425592116.log Error: can't open any of /var/tmp/from_scwrl_425592116.pdb or /var/tmp/from_scwrl_425592116_b.pdb or /var/tmp/from_scwrl_425592116_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1863095167.pdb -s /var/tmp/to_scwrl_1863095167.seq -o /var/tmp/from_scwrl_1863095167.pdb > /var/tmp/scwrl_1863095167.log Error: can't open any of /var/tmp/from_scwrl_1863095167.pdb or /var/tmp/from_scwrl_1863095167_b.pdb or /var/tmp/from_scwrl_1863095167_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1557282696.pdb -s /var/tmp/to_scwrl_1557282696.seq -o /var/tmp/from_scwrl_1557282696.pdb > /var/tmp/scwrl_1557282696.log Error: can't open any of /var/tmp/from_scwrl_1557282696.pdb or /var/tmp/from_scwrl_1557282696_b.pdb or /var/tmp/from_scwrl_1557282696_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 513 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1595940706.pdb -s /var/tmp/to_scwrl_1595940706.seq -o /var/tmp/from_scwrl_1595940706.pdb > /var/tmp/scwrl_1595940706.log Error: can't open any of /var/tmp/from_scwrl_1595940706.pdb or /var/tmp/from_scwrl_1595940706_b.pdb or /var/tmp/from_scwrl_1595940706_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1309196405.pdb -s /var/tmp/to_scwrl_1309196405.seq -o /var/tmp/from_scwrl_1309196405.pdb > /var/tmp/scwrl_1309196405.log Error: can't open any of /var/tmp/from_scwrl_1309196405.pdb or /var/tmp/from_scwrl_1309196405_b.pdb or /var/tmp/from_scwrl_1309196405_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1427379961.pdb -s /var/tmp/to_scwrl_1427379961.seq -o /var/tmp/from_scwrl_1427379961.pdb > /var/tmp/scwrl_1427379961.log Error: can't open any of /var/tmp/from_scwrl_1427379961.pdb or /var/tmp/from_scwrl_1427379961_b.pdb or /var/tmp/from_scwrl_1427379961_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_548885008.pdb -s /var/tmp/to_scwrl_548885008.seq -o /var/tmp/from_scwrl_548885008.pdb > /var/tmp/scwrl_548885008.log Error: can't open any of /var/tmp/from_scwrl_548885008.pdb or /var/tmp/from_scwrl_548885008_b.pdb or /var/tmp/from_scwrl_548885008_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1192370147.pdb -s /var/tmp/to_scwrl_1192370147.seq -o /var/tmp/from_scwrl_1192370147.pdb > /var/tmp/scwrl_1192370147.log Error: can't open any of /var/tmp/from_scwrl_1192370147.pdb or /var/tmp/from_scwrl_1192370147_b.pdb or /var/tmp/from_scwrl_1192370147_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 447 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1321179605.pdb -s /var/tmp/to_scwrl_1321179605.seq -o /var/tmp/from_scwrl_1321179605.pdb > /var/tmp/scwrl_1321179605.log Error: can't open any of /var/tmp/from_scwrl_1321179605.pdb or /var/tmp/from_scwrl_1321179605_b.pdb or /var/tmp/from_scwrl_1321179605_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 517 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1644030440.pdb -s /var/tmp/to_scwrl_1644030440.seq -o /var/tmp/from_scwrl_1644030440.pdb > /var/tmp/scwrl_1644030440.log Error: can't open any of /var/tmp/from_scwrl_1644030440.pdb or /var/tmp/from_scwrl_1644030440_b.pdb or /var/tmp/from_scwrl_1644030440_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 505 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2055382821.pdb -s /var/tmp/to_scwrl_2055382821.seq -o /var/tmp/from_scwrl_2055382821.pdb > /var/tmp/scwrl_2055382821.log Error: can't open any of /var/tmp/from_scwrl_2055382821.pdb or /var/tmp/from_scwrl_2055382821_b.pdb or /var/tmp/from_scwrl_2055382821_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_812761009.pdb -s /var/tmp/to_scwrl_812761009.seq -o /var/tmp/from_scwrl_812761009.pdb > /var/tmp/scwrl_812761009.log Error: can't open any of /var/tmp/from_scwrl_812761009.pdb or /var/tmp/from_scwrl_812761009_b.pdb or /var/tmp/from_scwrl_812761009_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 507 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_298107069.pdb -s /var/tmp/to_scwrl_298107069.seq -o /var/tmp/from_scwrl_298107069.pdb > /var/tmp/scwrl_298107069.log Error: can't open any of /var/tmp/from_scwrl_298107069.pdb or /var/tmp/from_scwrl_298107069_b.pdb or /var/tmp/from_scwrl_298107069_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 491 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_267098880.pdb -s /var/tmp/to_scwrl_267098880.seq -o /var/tmp/from_scwrl_267098880.pdb > /var/tmp/scwrl_267098880.log Error: can't open any of /var/tmp/from_scwrl_267098880.pdb or /var/tmp/from_scwrl_267098880_b.pdb or /var/tmp/from_scwrl_267098880_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 471 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1118921082.pdb -s /var/tmp/to_scwrl_1118921082.seq -o /var/tmp/from_scwrl_1118921082.pdb > /var/tmp/scwrl_1118921082.log Error: can't open any of /var/tmp/from_scwrl_1118921082.pdb or /var/tmp/from_scwrl_1118921082_b.pdb or /var/tmp/from_scwrl_1118921082_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 517 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_750241124.pdb -s /var/tmp/to_scwrl_750241124.seq -o /var/tmp/from_scwrl_750241124.pdb > /var/tmp/scwrl_750241124.log Error: can't open any of /var/tmp/from_scwrl_750241124.pdb or /var/tmp/from_scwrl_750241124_b.pdb or /var/tmp/from_scwrl_750241124_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 527 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_810707953.pdb -s /var/tmp/to_scwrl_810707953.seq -o /var/tmp/from_scwrl_810707953.pdb > /var/tmp/scwrl_810707953.log Error: can't open any of /var/tmp/from_scwrl_810707953.pdb or /var/tmp/from_scwrl_810707953_b.pdb or /var/tmp/from_scwrl_810707953_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 368 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1712230775.pdb -s /var/tmp/to_scwrl_1712230775.seq -o /var/tmp/from_scwrl_1712230775.pdb > /var/tmp/scwrl_1712230775.log Error: can't open any of /var/tmp/from_scwrl_1712230775.pdb or /var/tmp/from_scwrl_1712230775_b.pdb or /var/tmp/from_scwrl_1712230775_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 479 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1304943410.pdb -s /var/tmp/to_scwrl_1304943410.seq -o /var/tmp/from_scwrl_1304943410.pdb > /var/tmp/scwrl_1304943410.log Error: can't open any of /var/tmp/from_scwrl_1304943410.pdb or /var/tmp/from_scwrl_1304943410_b.pdb or /var/tmp/from_scwrl_1304943410_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 444 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_850507482.pdb -s /var/tmp/to_scwrl_850507482.seq -o /var/tmp/from_scwrl_850507482.pdb > /var/tmp/scwrl_850507482.log Error: can't open any of /var/tmp/from_scwrl_850507482.pdb or /var/tmp/from_scwrl_850507482_b.pdb or /var/tmp/from_scwrl_850507482_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 376 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_79330876.pdb -s /var/tmp/to_scwrl_79330876.seq -o /var/tmp/from_scwrl_79330876.pdb > /var/tmp/scwrl_79330876.log Error: can't open any of /var/tmp/from_scwrl_79330876.pdb or /var/tmp/from_scwrl_79330876_b.pdb or /var/tmp/from_scwrl_79330876_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 517 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1252034232.pdb -s /var/tmp/to_scwrl_1252034232.seq -o /var/tmp/from_scwrl_1252034232.pdb > /var/tmp/scwrl_1252034232.log Error: can't open any of /var/tmp/from_scwrl_1252034232.pdb or /var/tmp/from_scwrl_1252034232_b.pdb or /var/tmp/from_scwrl_1252034232_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 391 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2015352063.pdb -s /var/tmp/to_scwrl_2015352063.seq -o /var/tmp/from_scwrl_2015352063.pdb > /var/tmp/scwrl_2015352063.log Error: can't open any of /var/tmp/from_scwrl_2015352063.pdb or /var/tmp/from_scwrl_2015352063_b.pdb or /var/tmp/from_scwrl_2015352063_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1350298075.pdb -s /var/tmp/to_scwrl_1350298075.seq -o /var/tmp/from_scwrl_1350298075.pdb > /var/tmp/scwrl_1350298075.log Error: can't open any of /var/tmp/from_scwrl_1350298075.pdb or /var/tmp/from_scwrl_1350298075_b.pdb or /var/tmp/from_scwrl_1350298075_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1599851011.pdb -s /var/tmp/to_scwrl_1599851011.seq -o /var/tmp/from_scwrl_1599851011.pdb > /var/tmp/scwrl_1599851011.log Error: can't open any of /var/tmp/from_scwrl_1599851011.pdb or /var/tmp/from_scwrl_1599851011_b.pdb or /var/tmp/from_scwrl_1599851011_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_204197628.pdb -s /var/tmp/to_scwrl_204197628.seq -o /var/tmp/from_scwrl_204197628.pdb > /var/tmp/scwrl_204197628.log Error: can't open any of /var/tmp/from_scwrl_204197628.pdb or /var/tmp/from_scwrl_204197628_b.pdb or /var/tmp/from_scwrl_204197628_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 502 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1222078125.pdb -s /var/tmp/to_scwrl_1222078125.seq -o /var/tmp/from_scwrl_1222078125.pdb > /var/tmp/scwrl_1222078125.log Error: can't open any of /var/tmp/from_scwrl_1222078125.pdb or /var/tmp/from_scwrl_1222078125_b.pdb or /var/tmp/from_scwrl_1222078125_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 491 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_4898803.pdb -s /var/tmp/to_scwrl_4898803.seq -o /var/tmp/from_scwrl_4898803.pdb > /var/tmp/scwrl_4898803.log Error: can't open any of /var/tmp/from_scwrl_4898803.pdb or /var/tmp/from_scwrl_4898803_b.pdb or /var/tmp/from_scwrl_4898803_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 528 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1260980531.pdb -s /var/tmp/to_scwrl_1260980531.seq -o /var/tmp/from_scwrl_1260980531.pdb > /var/tmp/scwrl_1260980531.log Error: can't open any of /var/tmp/from_scwrl_1260980531.pdb or /var/tmp/from_scwrl_1260980531_b.pdb or /var/tmp/from_scwrl_1260980531_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 527 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1360101839.pdb -s /var/tmp/to_scwrl_1360101839.seq -o /var/tmp/from_scwrl_1360101839.pdb > /var/tmp/scwrl_1360101839.log Error: can't open any of /var/tmp/from_scwrl_1360101839.pdb or /var/tmp/from_scwrl_1360101839_b.pdb or /var/tmp/from_scwrl_1360101839_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 491 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1339575296.pdb -s /var/tmp/to_scwrl_1339575296.seq -o /var/tmp/from_scwrl_1339575296.pdb > /var/tmp/scwrl_1339575296.log Error: can't open any of /var/tmp/from_scwrl_1339575296.pdb or /var/tmp/from_scwrl_1339575296_b.pdb or /var/tmp/from_scwrl_1339575296_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1686572647.pdb -s /var/tmp/to_scwrl_1686572647.seq -o /var/tmp/from_scwrl_1686572647.pdb > /var/tmp/scwrl_1686572647.log Error: can't open any of /var/tmp/from_scwrl_1686572647.pdb or /var/tmp/from_scwrl_1686572647_b.pdb or /var/tmp/from_scwrl_1686572647_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1075713359.pdb -s /var/tmp/to_scwrl_1075713359.seq -o /var/tmp/from_scwrl_1075713359.pdb > /var/tmp/scwrl_1075713359.log Error: can't open any of /var/tmp/from_scwrl_1075713359.pdb or /var/tmp/from_scwrl_1075713359_b.pdb or /var/tmp/from_scwrl_1075713359_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_749374347.pdb -s /var/tmp/to_scwrl_749374347.seq -o /var/tmp/from_scwrl_749374347.pdb > /var/tmp/scwrl_749374347.log Error: can't open any of /var/tmp/from_scwrl_749374347.pdb or /var/tmp/from_scwrl_749374347_b.pdb or /var/tmp/from_scwrl_749374347_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1135029706.pdb -s /var/tmp/to_scwrl_1135029706.seq -o /var/tmp/from_scwrl_1135029706.pdb > /var/tmp/scwrl_1135029706.log Error: can't open any of /var/tmp/from_scwrl_1135029706.pdb or /var/tmp/from_scwrl_1135029706_b.pdb or /var/tmp/from_scwrl_1135029706_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_237426119.pdb -s /var/tmp/to_scwrl_237426119.seq -o /var/tmp/from_scwrl_237426119.pdb > /var/tmp/scwrl_237426119.log Error: can't open any of /var/tmp/from_scwrl_237426119.pdb or /var/tmp/from_scwrl_237426119_b.pdb or /var/tmp/from_scwrl_237426119_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_29270661.pdb -s /var/tmp/to_scwrl_29270661.seq -o /var/tmp/from_scwrl_29270661.pdb > /var/tmp/scwrl_29270661.log Error: can't open any of /var/tmp/from_scwrl_29270661.pdb or /var/tmp/from_scwrl_29270661_b.pdb or /var/tmp/from_scwrl_29270661_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1683914714.pdb -s /var/tmp/to_scwrl_1683914714.seq -o /var/tmp/from_scwrl_1683914714.pdb > /var/tmp/scwrl_1683914714.log Error: can't open any of /var/tmp/from_scwrl_1683914714.pdb or /var/tmp/from_scwrl_1683914714_b.pdb or /var/tmp/from_scwrl_1683914714_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1429796266.pdb -s /var/tmp/to_scwrl_1429796266.seq -o /var/tmp/from_scwrl_1429796266.pdb > /var/tmp/scwrl_1429796266.log Error: can't open any of /var/tmp/from_scwrl_1429796266.pdb or /var/tmp/from_scwrl_1429796266_b.pdb or /var/tmp/from_scwrl_1429796266_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1350450266.pdb -s /var/tmp/to_scwrl_1350450266.seq -o /var/tmp/from_scwrl_1350450266.pdb > /var/tmp/scwrl_1350450266.log Error: can't open any of /var/tmp/from_scwrl_1350450266.pdb or /var/tmp/from_scwrl_1350450266_b.pdb or /var/tmp/from_scwrl_1350450266_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1180461507.pdb -s /var/tmp/to_scwrl_1180461507.seq -o /var/tmp/from_scwrl_1180461507.pdb > /var/tmp/scwrl_1180461507.log Error: can't open any of /var/tmp/from_scwrl_1180461507.pdb or /var/tmp/from_scwrl_1180461507_b.pdb or /var/tmp/from_scwrl_1180461507_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1337695441.pdb -s /var/tmp/to_scwrl_1337695441.seq -o /var/tmp/from_scwrl_1337695441.pdb > /var/tmp/scwrl_1337695441.log Error: can't open any of /var/tmp/from_scwrl_1337695441.pdb or /var/tmp/from_scwrl_1337695441_b.pdb or /var/tmp/from_scwrl_1337695441_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 464 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_15727628.pdb -s /var/tmp/to_scwrl_15727628.seq -o /var/tmp/from_scwrl_15727628.pdb > /var/tmp/scwrl_15727628.log Error: can't open any of /var/tmp/from_scwrl_15727628.pdb or /var/tmp/from_scwrl_15727628_b.pdb or /var/tmp/from_scwrl_15727628_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 479 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1478568576.pdb -s /var/tmp/to_scwrl_1478568576.seq -o /var/tmp/from_scwrl_1478568576.pdb > /var/tmp/scwrl_1478568576.log Error: can't open any of /var/tmp/from_scwrl_1478568576.pdb or /var/tmp/from_scwrl_1478568576_b.pdb or /var/tmp/from_scwrl_1478568576_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 456 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1604794321.pdb -s /var/tmp/to_scwrl_1604794321.seq -o /var/tmp/from_scwrl_1604794321.pdb > /var/tmp/scwrl_1604794321.log Error: can't open any of /var/tmp/from_scwrl_1604794321.pdb or /var/tmp/from_scwrl_1604794321_b.pdb or /var/tmp/from_scwrl_1604794321_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 519 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1134648710.pdb -s /var/tmp/to_scwrl_1134648710.seq -o /var/tmp/from_scwrl_1134648710.pdb > /var/tmp/scwrl_1134648710.log Error: can't open any of /var/tmp/from_scwrl_1134648710.pdb or /var/tmp/from_scwrl_1134648710_b.pdb or /var/tmp/from_scwrl_1134648710_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 519 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_81326053.pdb -s /var/tmp/to_scwrl_81326053.seq -o /var/tmp/from_scwrl_81326053.pdb > /var/tmp/scwrl_81326053.log Error: can't open any of /var/tmp/from_scwrl_81326053.pdb or /var/tmp/from_scwrl_81326053_b.pdb or /var/tmp/from_scwrl_81326053_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_268018627.pdb -s /var/tmp/to_scwrl_268018627.seq -o /var/tmp/from_scwrl_268018627.pdb > /var/tmp/scwrl_268018627.log Error: can't open any of /var/tmp/from_scwrl_268018627.pdb or /var/tmp/from_scwrl_268018627_b.pdb or /var/tmp/from_scwrl_268018627_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_699395839.pdb -s /var/tmp/to_scwrl_699395839.seq -o /var/tmp/from_scwrl_699395839.pdb > /var/tmp/scwrl_699395839.log Error: can't open any of /var/tmp/from_scwrl_699395839.pdb or /var/tmp/from_scwrl_699395839_b.pdb or /var/tmp/from_scwrl_699395839_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1386269464.pdb -s /var/tmp/to_scwrl_1386269464.seq -o /var/tmp/from_scwrl_1386269464.pdb > /var/tmp/scwrl_1386269464.log Error: can't open any of /var/tmp/from_scwrl_1386269464.pdb or /var/tmp/from_scwrl_1386269464_b.pdb or /var/tmp/from_scwrl_1386269464_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 517 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1118526108.pdb -s /var/tmp/to_scwrl_1118526108.seq -o /var/tmp/from_scwrl_1118526108.pdb > /var/tmp/scwrl_1118526108.log Error: can't open any of /var/tmp/from_scwrl_1118526108.pdb or /var/tmp/from_scwrl_1118526108_b.pdb or /var/tmp/from_scwrl_1118526108_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 519 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_778726715.pdb -s /var/tmp/to_scwrl_778726715.seq -o /var/tmp/from_scwrl_778726715.pdb > /var/tmp/scwrl_778726715.log Error: can't open any of /var/tmp/from_scwrl_778726715.pdb or /var/tmp/from_scwrl_778726715_b.pdb or /var/tmp/from_scwrl_778726715_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 328 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_490820050.pdb -s /var/tmp/to_scwrl_490820050.seq -o /var/tmp/from_scwrl_490820050.pdb > /var/tmp/scwrl_490820050.log Error: can't open any of /var/tmp/from_scwrl_490820050.pdb or /var/tmp/from_scwrl_490820050_b.pdb or /var/tmp/from_scwrl_490820050_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 524 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_986394525.pdb -s /var/tmp/to_scwrl_986394525.seq -o /var/tmp/from_scwrl_986394525.pdb > /var/tmp/scwrl_986394525.log Error: can't open any of /var/tmp/from_scwrl_986394525.pdb or /var/tmp/from_scwrl_986394525_b.pdb or /var/tmp/from_scwrl_986394525_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2129024790.pdb -s /var/tmp/to_scwrl_2129024790.seq -o /var/tmp/from_scwrl_2129024790.pdb > /var/tmp/scwrl_2129024790.log Error: can't open any of /var/tmp/from_scwrl_2129024790.pdb or /var/tmp/from_scwrl_2129024790_b.pdb or /var/tmp/from_scwrl_2129024790_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2090671061.pdb -s /var/tmp/to_scwrl_2090671061.seq -o /var/tmp/from_scwrl_2090671061.pdb > /var/tmp/scwrl_2090671061.log Error: can't open any of /var/tmp/from_scwrl_2090671061.pdb or /var/tmp/from_scwrl_2090671061_b.pdb or /var/tmp/from_scwrl_2090671061_a.pdb Error: no new SCWRL conformation added # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1190592152.pdb -s /var/tmp/to_scwrl_1190592152.seq -o /var/tmp/from_scwrl_1190592152.pdb > /var/tmp/scwrl_1190592152.log Error: can't open any of /var/tmp/from_scwrl_1190592152.pdb or /var/tmp/from_scwrl_1190592152_b.pdb or /var/tmp/from_scwrl_1190592152_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1203619268.pdb -s /var/tmp/to_scwrl_1203619268.seq -o /var/tmp/from_scwrl_1203619268.pdb > /var/tmp/scwrl_1203619268.log Error: can't open any of /var/tmp/from_scwrl_1203619268.pdb or /var/tmp/from_scwrl_1203619268_b.pdb or /var/tmp/from_scwrl_1203619268_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_2095569864.pdb -s /var/tmp/to_scwrl_2095569864.seq -o /var/tmp/from_scwrl_2095569864.pdb > /var/tmp/scwrl_2095569864.log Error: can't open any of /var/tmp/from_scwrl_2095569864.pdb or /var/tmp/from_scwrl_2095569864_b.pdb or /var/tmp/from_scwrl_2095569864_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_304089037.pdb -s /var/tmp/to_scwrl_304089037.seq -o /var/tmp/from_scwrl_304089037.pdb > /var/tmp/scwrl_304089037.log Error: can't open any of /var/tmp/from_scwrl_304089037.pdb or /var/tmp/from_scwrl_304089037_b.pdb or /var/tmp/from_scwrl_304089037_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_416237461.pdb -s /var/tmp/to_scwrl_416237461.seq -o /var/tmp/from_scwrl_416237461.pdb > /var/tmp/scwrl_416237461.log Error: can't open any of /var/tmp/from_scwrl_416237461.pdb or /var/tmp/from_scwrl_416237461_b.pdb or /var/tmp/from_scwrl_416237461_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0334 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1287661514.pdb -s /var/tmp/to_scwrl_1287661514.seq -o /var/tmp/from_scwrl_1287661514.pdb > /var/tmp/scwrl_1287661514.log Error: can't open any of /var/tmp/from_scwrl_1287661514.pdb or /var/tmp/from_scwrl_1287661514_b.pdb or /var/tmp/from_scwrl_1287661514_a.pdb Error: no new SCWRL conformation added # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 529 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 477 ; scwrl -i /var/tmp/to_scwrl_1990661684.pdb -s /var/tmp/to_scwrl_1990661684.seq -o /var/tmp/from_scwrl_1990661684.pdb > /var/tmp/scwrl_1990661684.log Error: can't open any of /var/tmp/from_scwrl_1990661684.pdb or /var/tmp/from_scwrl_1990661684_b.pdb or /var/tmp/from_scwrl_1990661684_a.pdb Error: no new SCWRL conformation added # naming current conformation shub_TS1-scwrl # command:CPU_time= 152.225 sec, elapsed time= 171.185 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.predburial.rdb # command:# CostConform shub_TS1-scwrl costs 386.567 real_cost = 405.345 panther2_TS1-scwrl costs 3976.18 real_cost = 1126.55 nFOLD_TS5-scwrl costs 19897.9 real_cost = 790.346 nFOLD_TS4-scwrl costs 29841.8 real_cost = 808.228 nFOLD_TS3-scwrl costs 22896.8 real_cost = 881.022 nFOLD_TS2-scwrl costs 17742.9 real_cost = 915.162 nFOLD_TS1-scwrl costs 7565.96 real_cost = 740.787 mGen-3D_TS1-scwrl costs 7406.54 real_cost = 741.75 keasar-server_TS5-scwrl costs 1282.72 real_cost = 601.429 keasar-server_TS4-scwrl costs 267.407 real_cost = 396.317 keasar-server_TS3-scwrl costs 270.805 real_cost = 397.026 keasar-server_TS2-scwrl costs 265.011 real_cost = 394.518 keasar-server_TS1-scwrl costs 263.41 real_cost = 390.219 karypis.srv_TS3-scwrl costs 2706.92 real_cost = 885.802 karypis.srv_TS2-scwrl costs 283.702 real_cost = 394.987 karypis.srv_TS1-scwrl costs 285.045 real_cost = 394.445 karypis.srv.2_TS5-scwrl costs 273.083 real_cost = 391.809 karypis.srv.2_TS4-scwrl costs 269.192 real_cost = 390.446 karypis.srv.2_TS3-scwrl costs 258.743 real_cost = 387.016 karypis.srv.2_TS2-scwrl costs 285.684 real_cost = 388.679 karypis.srv.2_TS1-scwrl costs 284.775 real_cost = 388.344 gtg_AL4-scwrl costs 53679 real_cost = 979.493 gtg_AL3-scwrl costs 119006 real_cost = 985.693 gtg_AL2-scwrl costs 61389.5 real_cost = 988.079 gtg_AL1-scwrl costs 104797 real_cost = 966.614 forecast-s_AL5-scwrl costs 46582.6 real_cost = 1174.59 forecast-s_AL4-scwrl costs 37563.1 real_cost = 1179.26 forecast-s_AL3-scwrl costs 11219.9 real_cost = 1178.44 forecast-s_AL2-scwrl costs 54433 real_cost = 1172.02 forecast-s_AL1-scwrl costs 17792.5 real_cost = 1172.24 beautshotbase_TS1-scwrl costs 313.816 real_cost = 397.971 beautshot_TS1-scwrl costs 361.941 real_cost = 393.359 Zhang-Server_TS5-scwrl costs 255.53 real_cost = 389.7 Zhang-Server_TS4-scwrl costs 260.855 real_cost = 389.226 Zhang-Server_TS3-scwrl costs 269.41 real_cost = 390.204 Zhang-Server_TS2-scwrl costs 260.678 real_cost = 388.957 Zhang-Server_TS1-scwrl costs 257.679 real_cost = 389.501 UNI-EID_sfst_AL1-scwrl costs 26539.4 real_cost = 840.87 UNI-EID_expm_TS1-scwrl costs 7584.84 real_cost = 738.99 UNI-EID_bnmx_TS1-scwrl costs 26545.5 real_cost = 839.265 SPARKS2_TS5-scwrl costs 419.264 real_cost = 445.004 SPARKS2_TS4-scwrl costs 666.087 real_cost = 460.129 SPARKS2_TS3-scwrl costs 311.132 real_cost = 405.809 SPARKS2_TS2-scwrl costs 455.57 real_cost = 401.033 SPARKS2_TS1-scwrl costs 259.472 real_cost = 388.455 SP4_TS5-scwrl costs 435.422 real_cost = 463.432 SP4_TS4-scwrl costs 366.215 real_cost = 406.63 SP4_TS3-scwrl costs 596.567 real_cost = 445.236 SP4_TS2-scwrl costs 316.5 real_cost = 399.858 SP4_TS1-scwrl costs 270.992 real_cost = 389.654 SP3_TS5-scwrl costs 331.533 real_cost = 397.773 SP3_TS4-scwrl costs 418.452 real_cost = 449.561 SP3_TS3-scwrl costs 322.252 real_cost = 402.029 SP3_TS2-scwrl costs 617.221 real_cost = 416.535 SP3_TS1-scwrl costs 260.02 real_cost = 388.314 SAM_T06_server_TS5-scwrl costs 2132.21 real_cost = 783.815 SAM_T06_server_TS4-scwrl costs 1656.75 real_cost = 684.875 SAM_T06_server_TS3-scwrl costs 1672.93 real_cost = 700.473 SAM_T06_server_TS2-scwrl costs 752.95 real_cost = 497.47 SAM_T06_server_TS1-scwrl costs 255.643 real_cost = 384.457 SAM-T99_AL5-scwrl costs 89602.1 real_cost = 1013.94 SAM-T99_AL4-scwrl costs 134316 real_cost = 852.805 SAM-T99_AL3-scwrl costs 26500.3 real_cost = 827.364 SAM-T99_AL2-scwrl costs 26684.6 real_cost = 827.419 SAM-T99_AL1-scwrl costs 26537.8 real_cost = 828.404 SAM-T02_AL5-scwrl costs 19061.3 real_cost = 1049.51 SAM-T02_AL4-scwrl costs 91986.6 real_cost = 993.452 SAM-T02_AL3-scwrl costs 159311 real_cost = 991.259 SAM-T02_AL2-scwrl costs 77892.1 real_cost = 963.52 SAM-T02_AL1-scwrl costs 25874.9 real_cost = 852.955 ROKKY_TS1-scwrl costs 264.103 real_cost = 389.232 ROBETTA_TS5-scwrl costs 246.737 real_cost = 390.252 ROBETTA_TS4-scwrl costs 245.387 real_cost = 387.47 ROBETTA_TS3-scwrl costs 245.076 real_cost = 388.779 ROBETTA_TS2-scwrl costs 248.708 real_cost = 388.37 ROBETTA_TS1-scwrl costs 246.145 real_cost = 388.199 RAPTOR_TS5-scwrl costs 669.715 real_cost = 480.841 RAPTOR_TS4-scwrl costs 328.62 real_cost = 402.688 RAPTOR_TS3-scwrl costs 422.909 real_cost = 463.086 RAPTOR_TS2-scwrl costs 344.836 real_cost = 413.139 RAPTOR_TS1-scwrl costs 260.79 real_cost = 389.402 RAPTORESS_TS5-scwrl costs 315.919 real_cost = 398.484 RAPTORESS_TS4-scwrl costs 392.792 real_cost = 425.189 RAPTORESS_TS3-scwrl costs 321.403 real_cost = 417.262 RAPTORESS_TS2-scwrl costs 259.702 real_cost = 390.235 RAPTORESS_TS1-scwrl costs 259.702 real_cost = 390.235 RAPTOR-ACE_TS5-scwrl costs 283.058 real_cost = 394.667 RAPTOR-ACE_TS4-scwrl costs 260.02 real_cost = 388.314 RAPTOR-ACE_TS3-scwrl costs 261.377 real_cost = 389.211 RAPTOR-ACE_TS2-scwrl costs 257.827 real_cost = 388.298 RAPTOR-ACE_TS1-scwrl costs 263.804 real_cost = 388.275 Pmodeller6_TS5-scwrl costs 245.387 real_cost = 387.47 Pmodeller6_TS4-scwrl costs 246.737 real_cost = 390.252 Pmodeller6_TS3-scwrl costs 246.145 real_cost = 388.199 Pmodeller6_TS2-scwrl costs 308.766 real_cost = 396.494 Pmodeller6_TS1-scwrl costs 245.076 real_cost = 388.779 Phyre-2_TS5-scwrl costs 274.805 real_cost = 389.967 Phyre-2_TS4-scwrl costs 273.915 real_cost = 390.084 Phyre-2_TS3-scwrl costs 274.587 real_cost = 390.061 Phyre-2_TS2-scwrl costs 275.353 real_cost = 391.315 Phyre-2_TS1-scwrl costs 274.488 real_cost = 391.463 Phyre-1_TS1-scwrl costs 1403.55 real_cost = 624.961 Pcons6_TS5-scwrl costs 309.795 real_cost = 393.576 Pcons6_TS4-scwrl costs 308.766 real_cost = 396.494 Pcons6_TS3-scwrl costs 307.12 real_cost = 394.462 Pcons6_TS2-scwrl costs 308.674 real_cost = 393.268 Pcons6_TS1-scwrl costs 337.748 real_cost = 398.551 PROTINFO_TS5-scwrl costs 254.419 real_cost = 387.794 PROTINFO_TS4-scwrl costs 257.309 real_cost = 388.835 PROTINFO_TS3-scwrl costs 249.278 real_cost = 387.365 PROTINFO_TS2-scwrl costs 251.399 real_cost = 390.851 PROTINFO_TS1-scwrl costs 249.678 real_cost = 389.47 PROTINFO-AB_TS5-scwrl costs 270.373 real_cost = 392.681 PROTINFO-AB_TS4-scwrl costs 268.138 real_cost = 392.787 PROTINFO-AB_TS3-scwrl costs 268.087 real_cost = 394.057 PROTINFO-AB_TS2-scwrl costs 267.332 real_cost = 394.159 PROTINFO-AB_TS1-scwrl costs 268.455 real_cost = 393.918 NN_PUT_lab_TS1-scwrl costs 259.472 real_cost = 388.455 MetaTasser_TS5-scwrl costs 483.309 real_cost = 400.635 MetaTasser_TS4-scwrl costs 557.318 real_cost = 402.358 MetaTasser_TS3-scwrl costs 490.463 real_cost = 407.245 MetaTasser_TS2-scwrl costs 414.764 real_cost = 397.957 MetaTasser_TS1-scwrl costs 362.391 real_cost = 391.633 Ma-OPUS-server_TS5-scwrl costs 372.313 real_cost = 417.436 Ma-OPUS-server_TS4-scwrl costs 343.649 real_cost = 401.303 Ma-OPUS-server_TS3-scwrl costs 348.148 real_cost = 400.899 Ma-OPUS-server_TS2-scwrl costs 314.442 real_cost = 398.399 Ma-OPUS-server_TS1-scwrl costs 257.481 real_cost = 386.752 Ma-OPUS-server2_TS5-scwrl costs 339.492 real_cost = 408.544 Ma-OPUS-server2_TS4-scwrl costs 350.181 real_cost = 404.755 Ma-OPUS-server2_TS3-scwrl costs 312.286 real_cost = 402.995 Ma-OPUS-server2_TS2-scwrl costs 336.543 real_cost = 383.601 Ma-OPUS-server2_TS1-scwrl costs 257.481 real_cost = 386.752 LOOPP_TS5-scwrl costs 1556.7 real_cost = 654.973 LOOPP_TS4-scwrl costs 378.1 real_cost = 418.939 LOOPP_TS3-scwrl costs 442.133 real_cost = 424.853 LOOPP_TS2-scwrl costs 482.744 real_cost = 432.637 LOOPP_TS1-scwrl costs 328.696 real_cost = 402.434 Huber-Torda-Server_TS5-scwrl costs 9462.71 real_cost = 900.535 Huber-Torda-Server_TS4-scwrl costs 33250 real_cost = 900.541 Huber-Torda-Server_TS3-scwrl costs 18287.5 real_cost = 819.461 Huber-Torda-Server_TS2-scwrl costs 9255.68 real_cost = 870.628 Huber-Torda-Server_TS1-scwrl costs 7552.63 real_cost = 733.41 HHpred3_TS1-scwrl costs 261.699 real_cost = 389.818 HHpred2_TS1-scwrl costs 261.699 real_cost = 389.818 HHpred1_TS1-scwrl costs 261.699 real_cost = 389.818 GeneSilicoMetaServer_TS5-scwrl costs 279.145 real_cost = 393.818 GeneSilicoMetaServer_TS4-scwrl costs 276.449 real_cost = 388.519 GeneSilicoMetaServer_TS3-scwrl costs 259.293 real_cost = 388.085 GeneSilicoMetaServer_TS2-scwrl costs 256.848 real_cost = 387.141 GeneSilicoMetaServer_TS1-scwrl costs 276.238 real_cost = 390.295 FUNCTION_TS5-scwrl costs 285.212 real_cost = 387.698 FUNCTION_TS4-scwrl costs 277.234 real_cost = 389.267 FUNCTION_TS3-scwrl costs 273.332 real_cost = 387.461 FUNCTION_TS2-scwrl costs 274.841 real_cost = 385.335 FUNCTION_TS1-scwrl costs 279.162 real_cost = 388.253 FUGUE_AL5-scwrl costs 112207 real_cost = 946.743 FUGUE_AL4-scwrl costs 175912 real_cost = 981.051 FUGUE_AL3-scwrl costs 163922 real_cost = 984.387 FUGUE_AL2-scwrl costs 8171.01 real_cost = 1099.3 FUGUE_AL1-scwrl costs 26542.3 real_cost = 826.789 FUGMOD_TS5-scwrl costs 713.85 real_cost = 483.162 FUGMOD_TS4-scwrl costs 759.18 real_cost = 478.969 FUGMOD_TS3-scwrl costs 569.141 real_cost = 450.716 FUGMOD_TS2-scwrl costs 3048.54 real_cost = 951.735 FUGMOD_TS1-scwrl costs 284.617 real_cost = 391.798 FPSOLVER-SERVER_TS5-scwrl costs 379.575 real_cost = 427.935 FPSOLVER-SERVER_TS4-scwrl costs 381.419 real_cost = 429.441 FPSOLVER-SERVER_TS3-scwrl costs 381.937 real_cost = 423.899 FPSOLVER-SERVER_TS2-scwrl costs 378.564 real_cost = 412.913 FPSOLVER-SERVER_TS1-scwrl costs 370.468 real_cost = 397.513 FORTE2_AL5-scwrl costs 129449 real_cost = 861.841 FORTE2_AL4-scwrl costs 48097 real_cost = 850.815 FORTE2_AL3-scwrl costs 27733.7 real_cost = 966.53 FORTE2_AL2-scwrl costs 115424 real_cost = 840.848 FORTE2_AL1-scwrl costs 26057.7 real_cost = 843.418 FORTE1_AL5-scwrl costs 130959 real_cost = 850.226 FORTE1_AL4-scwrl costs 64318.9 real_cost = 979.166 FORTE1_AL3-scwrl costs 112524 real_cost = 842.102 FORTE1_AL2-scwrl costs 27809.5 real_cost = 966.541 FORTE1_AL1-scwrl costs 25884.1 real_cost = 856.264 FOLDpro_TS5-scwrl costs 264.797 real_cost = 389.21 FOLDpro_TS4-scwrl costs 255.881 real_cost = 388.684 FOLDpro_TS3-scwrl costs 255.881 real_cost = 388.684 FOLDpro_TS2-scwrl costs 256.328 real_cost = 388.271 FOLDpro_TS1-scwrl costs 257.599 real_cost = 389.702 FAMS_TS5-scwrl costs 329.152 real_cost = 411.309 FAMS_TS4-scwrl costs 329.152 real_cost = 411.309 FAMS_TS3-scwrl costs 273.479 real_cost = 385.408 FAMS_TS2-scwrl costs 297.844 real_cost = 391.315 FAMS_TS1-scwrl costs 281.112 real_cost = 385.734 FAMSD_TS5-scwrl costs 293.603 real_cost = 407.427 FAMSD_TS4-scwrl costs 298.237 real_cost = 391.938 FAMSD_TS3-scwrl costs 293.313 real_cost = 393.254 FAMSD_TS2-scwrl costs 314.091 real_cost = 408.462 FAMSD_TS1-scwrl costs 259.773 real_cost = 387.261 Distill_TS5-scwrl costs 4967.44 real_cost = 1060.29 Distill_TS4-scwrl costs 4968.95 real_cost = 1059.47 Distill_TS3-scwrl costs 4968.47 real_cost = 1064.58 Distill_TS2-scwrl costs 4974.51 real_cost = 1058.72 Distill_TS1-scwrl costs 4970.58 real_cost = 1049.62 CaspIta-FOX_TS5-scwrl costs 1291.46 real_cost = 587.433 CaspIta-FOX_TS4-scwrl costs 1575.45 real_cost = 643.77 CaspIta-FOX_TS3-scwrl costs 1257.54 real_cost = 574.014 CaspIta-FOX_TS2-scwrl costs 1598.06 real_cost = 638.886 CaspIta-FOX_TS1-scwrl costs 290.654 real_cost = 394.888 CPHmodels_TS1-scwrl costs 323.844 real_cost = 403.262 CIRCLE_TS5-scwrl costs 274.611 real_cost = 392.616 CIRCLE_TS4-scwrl costs 329.152 real_cost = 411.309 CIRCLE_TS3-scwrl costs 280.763 real_cost = 393.896 CIRCLE_TS2-scwrl costs 297.844 real_cost = 391.315 CIRCLE_TS1-scwrl costs 273.479 real_cost = 385.408 Bilab-ENABLE_TS4-scwrl costs 260.978 real_cost = 388.954 Bilab-ENABLE_TS3-scwrl costs 267.805 real_cost = 390.861 Bilab-ENABLE_TS2-scwrl costs 255.016 real_cost = 389.957 Bilab-ENABLE_TS1-scwrl costs 260.537 real_cost = 389.802 BayesHH_TS1-scwrl costs 261.699 real_cost = 389.818 ABIpro_TS5-scwrl costs 449.164 real_cost = 394.86 ABIpro_TS4-scwrl costs 443.062 real_cost = 387.984 ABIpro_TS3-scwrl costs 407.664 real_cost = 383.985 ABIpro_TS2-scwrl costs 397.833 real_cost = 382.99 ABIpro_TS1-scwrl costs 453.838 real_cost = 397.663 3Dpro_TS5-scwrl costs 268.456 real_cost = 387.951 3Dpro_TS4-scwrl costs 260.576 real_cost = 388.474 3Dpro_TS3-scwrl costs 256.21 real_cost = 388.025 3Dpro_TS2-scwrl costs 257.077 real_cost = 388.75 3Dpro_TS1-scwrl costs 257.599 real_cost = 389.702 3D-JIGSAW_TS4-scwrl costs 351.74 real_cost = 403.479 3D-JIGSAW_TS3-scwrl costs 350.042 real_cost = 404.012 3D-JIGSAW_TS2-scwrl costs 350.979 real_cost = 403.391 3D-JIGSAW_TS1-scwrl costs 358.895 real_cost = 404.489 3D-JIGSAW_RECOM_TS5-scwrl costs 349.389 real_cost = 402.328 3D-JIGSAW_RECOM_TS4-scwrl costs 343.399 real_cost = 401.007 3D-JIGSAW_RECOM_TS3-scwrl costs 342.299 real_cost = 401.164 3D-JIGSAW_RECOM_TS2-scwrl costs 341.585 real_cost = 401.02 3D-JIGSAW_RECOM_TS1-scwrl costs 341.915 real_cost = 401.718 3D-JIGSAW_POPULUS_TS5-scwrl costs 328.067 real_cost = 413.937 3D-JIGSAW_POPULUS_TS4-scwrl costs 335.401 real_cost = 415.595 3D-JIGSAW_POPULUS_TS3-scwrl costs 328.723 real_cost = 415.566 3D-JIGSAW_POPULUS_TS2-scwrl costs 328.998 real_cost = 404.375 3D-JIGSAW_POPULUS_TS1-scwrl costs 331.561 real_cost = 416.172 dimer//dimer-2aqj-from-try8-opt2 costs 243.749 real_cost = 390.139 dimer//dimer-2aqj-from-try7-opt2 costs 245.069 real_cost = 390.028 dimer//dimer-2aqj-from-try6-opt2 costs 247.055 real_cost = 390.04 dimer//try1-opt2.unpack costs 381.7 real_cost = 401.247 dimer//try1-opt2.unpack.gromacs0.repack-nonPC costs 386.14 real_cost = 399.436 dimer//try1-opt2.unpack.gromacs0 costs 386.541 real_cost = 400.14 dimer//try1-opt2.repack-nonPC costs 381.186 real_cost = 401.571 dimer//try1-opt2 costs 381.7 real_cost = 401.247 dimer//try1-opt1 costs 398.049 real_cost = 419.518 dimer//try1-opt1-scwrl costs 398.708 real_cost = 419.246 T0334.try9-opt2.repack-nonPC.pdb.gz costs 245.504 real_cost = 390.07 T0334.try9-opt2.pdb.gz costs 244.778 real_cost = 391.414 T0334.try9-opt2.gromacs0.repack-nonPC.pdb.gz costs 252.732 real_cost = 391.537 T0334.try9-opt2.gromacs0.pdb.gz costs 252.383 real_cost = 392.018 T0334.try9-opt1.pdb.gz costs 247.349 real_cost = 391.842 T0334.try9-opt1-scwrl.pdb.gz costs 253.243 real_cost = 390.29 T0334.try8-opt2.repack-nonPC.pdb.gz costs 245.406 real_cost = 389.106 T0334.try8-opt2.pdb.gz costs 243.672 real_cost = 389.952 T0334.try8-opt2.gromacs0.repack-nonPC.pdb.gz costs 251.139 real_cost = 391.998 T0334.try8-opt2.gromacs0.pdb.gz costs 250.281 real_cost = 391.518 T0334.try8-opt1.pdb.gz costs 244.834 real_cost = 390.078 T0334.try8-opt1-scwrl.pdb.gz costs 251.458 real_cost = 388.875 T0334.try7-opt2.repack-nonPC.pdb.gz costs 245.896 real_cost = 389.756 T0334.try7-opt2.pdb.gz costs 245.048 real_cost = 390.02 T0334.try7-opt2.gromacs0.repack-nonPC.pdb.gz costs 252.135 real_cost = 391.501 T0334.try7-opt2.gromacs0.pdb.gz costs 251.353 real_cost = 391.29 T0334.try7-opt1.pdb.gz costs 246.399 real_cost = 389.761 T0334.try7-opt1-scwrl.pdb.gz costs 252.713 real_cost = 388.545 T0334.try6-opt2.repack-nonPC.pdb.gz costs 247.493 real_cost = 388.538 T0334.try6-opt2.pdb.gz costs 247.04 real_cost = 390.12 T0334.try6-opt2.gromacs0.repack-nonPC.pdb.gz costs 253.831 real_cost = 389.783 T0334.try6-opt2.gromacs0.pdb.gz costs 253.739 real_cost = 390.241 T0334.try6-opt1.pdb.gz costs 249.111 real_cost = 390.602 T0334.try6-opt1-scwrl.pdb.gz costs 253.906 real_cost = 389.313 T0334.try3-opt2.repack-nonPC.pdb.gz costs 270.886 real_cost = 393.351 T0334.try3-opt2.pdb.gz costs 270.883 real_cost = 392.077 T0334.try3-opt2.gromacs0.repack-nonPC.pdb.gz costs 279.074 real_cost = 391.481 T0334.try3-opt2.gromacs0.pdb.gz costs 279.233 real_cost = 392.324 T0334.try3-opt1.pdb.gz costs 280.469 real_cost = 392.831 T0334.try3-opt1-scwrl.pdb.gz costs 282.695 real_cost = 391.585 T0334.try2-opt2.repack-nonPC.pdb.gz costs 252.827 real_cost = 392.586 T0334.try2-opt2.pdb.gz costs 252.414 real_cost = 390.929 T0334.try2-opt2.gromacs0.repack-nonPC.pdb.gz costs 259.342 real_cost = 392.408 T0334.try2-opt2.gromacs0.pdb.gz costs 259.546 real_cost = 391.023 T0334.try2-opt1.pdb.gz costs 261.341 real_cost = 390.38 T0334.try2-opt1-scwrl.pdb.gz costs 262.892 real_cost = 390.403 T0334.try17-opt2.repack-nonPC.pdb.gz costs 265.397 real_cost = 393.771 T0334.try17-opt2.pdb.gz costs 265.243 real_cost = 392.071 T0334.try17-opt2.gromacs0.repack-nonPC.pdb.gz costs 271.756 real_cost = 392.732 T0334.try17-opt2.gromacs0.pdb.gz costs 271.69 real_cost = 391.81 T0334.try17-opt1.pdb.gz costs 269.772 real_cost = 391.642 T0334.try17-opt1-scwrl.pdb.gz costs 274.018 real_cost = 392.909 T0334.try16-opt2.repack-nonPC.pdb.gz costs 244.792 real_cost = 387.06 T0334.try16-opt2.pdb.gz costs 245.191 real_cost = 386.713 T0334.try16-opt2.gromacs0.repack-nonPC.pdb.gz costs 252.311 real_cost = 387.71 T0334.try16-opt2.gromacs0.pdb.gz costs 252.708 real_cost = 386.846 T0334.try16-opt1.pdb.gz costs 251.391 real_cost = 388.169 T0334.try16-opt1-scwrl.pdb.gz costs 256.738 real_cost = 388.804 T0334.try15-opt2.repack-nonPC.pdb.gz costs 244.497 real_cost = 391.638 T0334.try15-opt2.pdb.gz costs 244.952 real_cost = 390.488 T0334.try15-opt2.gromacs0.repack-nonPC.pdb.gz costs 252.912 real_cost = 392.231 T0334.try15-opt2.gromacs0.pdb.gz costs 253.005 real_cost = 391.727 T0334.try15-opt1.pdb.gz costs 258.336 real_cost = 390.759 T0334.try15-opt1-scwrl.pdb.gz costs 261.087 real_cost = 390.532 T0334.try14-opt2.repack-nonPC.pdb.gz costs 243.453 real_cost = 388.984 T0334.try14-opt2.pdb.gz costs 240.909 real_cost = 390.535 T0334.try14-opt2.gromacs0.repack-nonPC.pdb.gz costs 250.542 real_cost = 391.082 T0334.try14-opt2.gromacs0.pdb.gz costs 248.91 real_cost = 391.111 T0334.try14-opt1.pdb.gz costs 241.628 real_cost = 390.166 T0334.try14-opt1-scwrl.pdb.gz costs 250.163 real_cost = 389.163 T0334.try13-opt2.repack-nonPC.pdb.gz costs 242.711 real_cost = 389.131 T0334.try13-opt2.pdb.gz costs 240.773 real_cost = 390.678 T0334.try13-opt2.gromacs0.repack-nonPC.pdb.gz costs 251.163 real_cost = 390.982 T0334.try13-opt2.gromacs0.pdb.gz costs 249.562 real_cost = 391.441 T0334.try13-opt1.pdb.gz costs 241.648 real_cost = 390.523 T0334.try13-opt1-scwrl.pdb.gz costs 250.201 real_cost = 389.379 T0334.try12-opt2.repack-nonPC.pdb.gz costs 246.381 real_cost = 391.26 T0334.try12-opt2.pdb.gz costs 245.262 real_cost = 390.705 T0334.try12-opt2.gromacs0.repack-nonPC.pdb.gz costs 251.106 real_cost = 390.613 T0334.try12-opt2.gromacs0.pdb.gz costs 250.056 real_cost = 391.664 T0334.try12-opt1.pdb.gz costs 247.705 real_cost = 390.758 T0334.try12-opt1-scwrl.pdb.gz costs 253.263 real_cost = 390.198 T0334.try11-opt2.repack-nonPC.pdb.gz costs 243.95 real_cost = 388.581 T0334.try11-opt2.pdb.gz costs 241.719 real_cost = 390.123 T0334.try11-opt2.gromacs0.repack-nonPC.pdb.gz costs 250.478 real_cost = 391.239 T0334.try11-opt2.gromacs0.pdb.gz costs 249.421 real_cost = 390.762 T0334.try11-opt1.pdb.gz costs 242.338 real_cost = 390.232 T0334.try11-opt1-scwrl.pdb.gz costs 250.823 real_cost = 388.891 T0334.try10-opt2.repack-nonPC.pdb.gz costs 244.532 real_cost = 389.362 T0334.try10-opt2.pdb.gz costs 242.355 real_cost = 390.196 T0334.try10-opt2.gromacs0.repack-nonPC.pdb.gz costs 251.245 real_cost = 390.815 T0334.try10-opt2.gromacs0.pdb.gz costs 250.274 real_cost = 391.234 T0334.try10-opt1.pdb.gz costs 243.499 real_cost = 390.106 T0334.try10-opt1-scwrl.pdb.gz costs 251.23 real_cost = 388.896 T0334.try1-opt2.repack-nonPC.pdb.gz costs 250.339 real_cost = 386.01 T0334.try1-opt2.pdb.gz costs 250.104 real_cost = 384.419 T0334.try1-opt2.gromacs0.repack-nonPC.pdb.gz costs 262.388 real_cost = 387.271 T0334.try1-opt2.gromacs0.pdb.gz costs 263.074 real_cost = 388.425 T0334.try1-opt1.pdb.gz costs 258.999 real_cost = 386.913 T0334.try1-opt1-scwrl.pdb.gz costs 260.506 real_cost = 386.813 ../model5.ts-submitted costs 751.426 real_cost = 498.641 ../model4.ts-submitted costs 245.013 real_cost = 390.559 ../model3.ts-submitted costs 245.151 real_cost = 386.773 ../model2.ts-submitted costs 251.134 real_cost = 390.695 ../model1.ts-submitted costs 240.916 real_cost = 390.504 align5 costs 1865.82 real_cost = 693.858 align4 costs 1773.85 real_cost = 686.965 align3 costs 2465.61 real_cost = 764.978 align2 costs 1901.62 real_cost = 712.944 align1 costs 912.919 real_cost = 490.817 T0334.try1-opt2.pdb costs 250.104 real_cost = 384.446 model5-scwrl costs 751.426 real_cost = 498.641 model4-scwrl costs 245.013 real_cost = 390.559 model3-scwrl costs 245.151 real_cost = 386.773 model2-scwrl costs 251.134 real_cost = 390.695 model1-scwrl costs 240.916 real_cost = 390.409 T0334 costs 674.426 real_cost = -885 # command:CPU_time= 3489.43 sec, elapsed time= 3726.52 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.predburial.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.predburial.rdb mv -f decoys/evaluate.predburial.pretty decoys/evaluate.predburial.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.predburial.rdb > decoys/evaluate.predburial.pretty make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'