/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
find . -empty -exec rm -f '{}' \; -print
rm: cannot remove `./decoys': Is a directory
date
Mon Jun 19 08:34:49 PDT 2006
echo -n "Make started " >> README
date >> README
echo "Running on "shaw.cse.ucsc.edu >> README
date
Mon Jun 19 08:34:49 PDT 2006
echo fetching T0334 from http://predictioncenter.org/casp7/targets/templates/t0334.seq.txt
fetching T0334 from http://predictioncenter.org/casp7/targets/templates/t0334.seq.txt
wget -N \
http://predictioncenter.org/casp7/targets/templates/t0334.seq.txt \
http://predictioncenter.org/casp7/targets/templates/t0334.doc.html \
http://predictioncenter.org/casp7/targets/templates/t0334.pdb.txt
--08:34:50-- http://predictioncenter.org/casp7/targets/templates/t0334.seq.txt
=> `t0334.seq.txt'
Resolving predictioncenter.org... 128.120.136.181
Connecting to predictioncenter.org|128.120.136.181|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 592 [text/plain]
0K 100% 62.73 MB/s
08:34:50 (62.73 MB/s) - `t0334.seq.txt' saved [592/592]
--08:34:50-- http://predictioncenter.org/casp7/targets/templates/t0334.doc.html
=> `t0334.doc.html'
Reusing existing connection to predictioncenter.org:80.
HTTP request sent, awaiting response... 200 OK
Length: 1,444 (1.4K) [text/html]
0K . 100% 91.81 MB/s
08:34:50 (91.81 MB/s) - `t0334.doc.html' saved [1444/1444]
--08:34:50-- http://predictioncenter.org/casp7/targets/templates/t0334.pdb.txt
=> `t0334.pdb.txt'
Reusing existing connection to predictioncenter.org:80.
HTTP request sent, awaiting response... 200 OK
Length: 344,880 (337K) [text/plain]
0K .......... .......... .......... .......... .......... 14% 150.70 MB/s
50K .......... .......... .......... .......... .......... 29% 4.02 MB/s
100K .......... .......... .......... .......... .......... 44% 6.63 MB/s
150K .......... .......... .......... .......... .......... 59% 8.88 MB/s
200K .......... .......... .......... .......... .......... 74% 9.53 MB/s
250K .......... .......... .......... .......... .......... 89% 9.10 MB/s
300K .......... .......... .......... ...... 100% 9.56 MB/s
08:34:50 (8.31 MB/s) - `t0334.pdb.txt' saved [344880/344880]
FINISHED --08:34:50--
Downloaded: 346,916 bytes in 3 files
mv -f t0334.seq.txt T0334.a2m
mv -f t0334.pdb.txt T0334.blank.pdb
gzip -f T0334.blank.pdb
mv -f t0334.doc.html T0334.doc.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl create_summary_html \
T0334 T0334.a2m> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_section_head_summary_html \
Inputs >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
echo Received sequence T0334.a2m
Received sequence T0334.a2m
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Submitted sequence(s)" \
T0334.a2m >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"README file" \
README >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Provided documentation" \
T0334.doc.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/bin/i686/blastall -p blastp -d /projects/compbio/data/pdb/dunbrack-pdbaa -i T0334.a2m \
-e 100 -I -m 9 -o T0334.pdb.blast
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Quick blastp of non-redundant PDB" \
T0334.pdb.blast >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
date
Mon Jun 19 08:34:54 PDT 2006
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl end_section_summary_html \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_section_head_summary_html \
'Multiple alignment' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
sed -e '/>/!s/[ .a-z]//g' T0334.upper-only.a2m
/usr/bin/gmake -k AL_METHOD=t06 build_multiple_alignment build_pretty build_mod w0.5_logo conserved_script 1.small_divider
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
echo "making T06 alignment"
making T06 alignment
/projects/compbio/experiments/models.97/scripts04/target06 \
-seed T0334.a2m -out T0334.t06.a2m.gz \
-tmp /var/tmp -db /projects/compbio/data/nrp/nr
target06 -out T0334.t06.a2m.gz -seed T0334.a2m -threshold 0.0001 -threshold 0.001 -threshold 0.004 -threshold 0.01 -prethreshold 10 -prethreshold 30 -prethreshold 200 -prethreshold 1000 -max_blast 100 -max_blast 600 -max_blast 4000 -max_blast 25000 -db /projects/compbio/data/nrp/nr -tmp /var/tmp
Working directory= /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296
@@@@ /projects/compbio/bin/i686/fastacmd -I T -d /projects/compbio/data/nrp/nr
Database /projects/compbio/data/nrp/nr has 3695564 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db T0334.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: seed T0334.a2m has 530 alignmnent columns
Cleaned up seed is in T0334.a2m, with guide sequence 'T0334'
DEBUG: iteration /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0 thresh=0.0001 prethresh=10
DEBUG: database=/projects/compbio/data/nrp/nr max_blast=100
DEBUG: bits_per_col=0.5 prior=/projects/compbio/lib/recode3.20comp
DEBUG: muscle_maxhours=0 muscle_iters=0 buildmodel_iters=10
DEBUG ids_from_blast_querya2m:
DEBUG: e_value = 10
DEBUG: delete_tmp = 1
DEBUG: max_report = 100
DEBUG: tmp_prefix = /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-blast
@@@@ /projects/compbio/bin/i686/blastpgp -d /projects/compbio/data/nrp/nr -i /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-blast.blast-query -B /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-blast.blast-align -F F -I T -e 10 -b 100 -v 100 -m 9 -o /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.blast.blast-out
[blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file
[blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully
BLAST found 100 ids
@@@@ /projects/compbio/bin/i686/fastacmd -d /projects/compbio/data/nrp/nr -i /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.blast.ids > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.blast.fa
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.blast.fa
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
Prefetched 100 sequences to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.blast.fa
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-from-align -alignfile T0334.a2m -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file T0334.a2m (1 sequence, 530 columns) as A2M alignment.
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-from-align.mod /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.mod(2): Reading initial model from MODEL -- Model from alignment file T0334.a2m
DEBUG: HMM /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.mod has 530 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = mult
DEBUG: align_style = viterbi
DEBUG: sw = local
DEBUG: db_size = 3695564
DEBUG: e_max = 0.0001
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-hmm
DEBUG: select = by-e-value
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-hmm_0.514016096849755 -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.mod -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.blast.fa -db_size 3695564 -sw 2 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 4 -Emax 0.0001 -dpstyle 0 -adpstyle 1 -select_mdalign 4 -select_md 4 -md_Emax 0.0001 -simple_threshold 10000 -Motif_cutoff 0.0377358490566038 -align_short 3
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.mod(2): Reading initial model from MODEL -- Model from alignment file T0334.a2m
Scoring model iter0.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -328.363086
Database has 100 sequences with 51380 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-hmm_0.514016096849755.mult
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-hmm_0.514016096849755.mult /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.found.a2m
@@@@ rm -fv /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-hmm_0.514016096849755.* /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-hmm_0.857930866809589.*
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-hmm_0.514016096849755.dist'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-hmm_0.514016096849755.mstat'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-hmm_0.514016096849755.mult'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.found.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.found.a2m contains 100 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: training file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.train.a2m has 101 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-thinned -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.train.a2m -percent_id 0.8
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.train.a2m (101 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-thinned.a2m.
Dropping 23 (of 101) sequences with > 80.0% id in aligned columns
78 sequences left after dropping 23 of 101 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-thinned.a2m
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-from-align -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-thinned.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-thinned.a2m.gz (78 sequences, 530 columns) as A2M alignment.
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-thinned-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.train.a2m -percent_id 1
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.train.a2m (101 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-thinned-trainset.a2m.
Dropping 1 (of 101) sequences with > 100.0% id in aligned columns
100 sequences left after dropping 1 of 101 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-thinned-trainset.a2m
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-thinned-trainset.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-thinned-trainset.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-thinned-trainset.a2m.gz (100 sequences, 530 columns) as A2M alignment.
@@@@ /projects/compbio/bin/i686/buildmodel /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-retrain -insert /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-from-align.mod -train /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-thinned-trainset.a2m.gz -binary_output 1 -many_files 1 -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -alphabet protein -dpstyle 1 -sw 2 -nmodels 1 -modellength 0 -Nseq 111 -sequence_weights /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-trainset.weightoutput -retrain_noise_scale 0.0001 -surgery_noise_scale 0.0001 -anneal_length 4 -reestimates 10 -synchfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.train.a2m -synchweight 10.0498756211209
Reading parameter file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-from-align.mod
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-from-align.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-thinned.a2m.gz
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.train.a2m (101 sequences, 530 columns) as A2M alignment.
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-----qhgr
a[526] - g[526] Q modi 527 i 527 M:D delete
a[527] - g[526] Q modi 528 i 527 M:D delete
a[528] - g[526] Q modi 529 i 527 M:D delete
a[529] - g[526] Q modi 530 i 527 M:D delete
a[530] - g[526] Q modi 531 i 527 I:D !delete type F
a[531] q g[526] Q modi 532 i 528 M:I insert
a[532] h g[527] H modi 532 i 529 M:I insert
a[533] g g[528] G modi 532 i 530 M:I insert
a[534] r g[529] R modi 532 i 531 M:I insert
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-QHGR
a[526] - g[526] Q modi 527 i 527 I:D !delete type F
-505.60 -366.01 -446.80 36.39 12 2 531
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-retrain.mod /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-retrain
DEBUG: HMM /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.mod has 531 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = a2m
DEBUG: align_style = viterbi
DEBUG: sw = semilocal
DEBUG: db_size = undef
DEBUG: e_max = 1
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm
DEBUG: select = all
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm_0.0936261616448029 -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.mod -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.train.a2m -sw 1 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 8 -Emax 1 -dpstyle 0 -adpstyle 1 -select_align 8
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm-retrain
Scoring model iter0-buildmodel.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -478.638227
Database has 101 sequences with 50660 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm_0.0936261616448029.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ gzip < /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm_0.0936261616448029.a2m > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.raw-a2m.gz
@@@@ rm -fv /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm_0.0936261616448029.* /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm_0.991214880341538.*
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm_0.0936261616448029.a2m'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-hmm_0.0936261616448029.dist'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.raw-a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ prettyalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.raw-a2m.gz -L 50000 -f | grep -v '^;' | gzip > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel-all.dots.gz
SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.caps.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam-thinned -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.a2m -percent_id 0.8
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.a2m (101 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam-thinned.a2m.
Dropping 25 (of 101) sequences with > 80.0% id in aligned columns
76 sequences left after dropping 25 of 101 sequences.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam-thinned.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam-from-align -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam-thinned.a2m -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam-thinned.a2m (76 sequences, 530 columns) as A2M alignment.
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam-from-align.mod /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam-thinned.a2m
@@@@ /projects/compbio/bin/i686/makelogo /projects/compbio/tmp/tmp_savings_29296 -i /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam.mod -logo_rel_entropy 1 -logo_savings_output /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam.savings
Reading parameter file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam.mod
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0_decontam-thinned.a2m
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
@@@@ gzip < /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0-buildmodel.a2m > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.a2m.gz
DEBUG: iteration /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1 thresh=0.001 prethresh=30
DEBUG: database=/projects/compbio/data/nrp/nr max_blast=600
DEBUG: bits_per_col=0.5 prior=/projects/compbio/lib/recode3.20comp
DEBUG: muscle_maxhours=0.1 muscle_iters=0 buildmodel_iters=10
DEBUG ids_from_blast_querya2m:
DEBUG: e_value = 30
DEBUG: delete_tmp = 1
DEBUG: max_report = 600
DEBUG: tmp_prefix = /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-blast
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/blastpgp -d /projects/compbio/data/nrp/nr -i /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-blast.blast-query -B /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-blast.blast-align -F F -I T -e 30 -b 600 -v 600 -m 9 -o /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.blast.blast-out
[blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file
[blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully
BLAST found 600 ids
@@@@ /projects/compbio/bin/i686/fastacmd -d /projects/compbio/data/nrp/nr -i /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.blast.ids > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.blast.fa
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.blast.fa
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
Prefetched 600 sequences to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.blast.fa
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-from-align -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.a2m.gz (101 sequences, 530 columns) as A2M alignment.
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-from-align.mod /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.a2m.gz
DEBUG: HMM /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.mod has 530 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = mult
DEBUG: align_style = viterbi
DEBUG: sw = local
DEBUG: db_size = 3695564
DEBUG: e_max = 0.001
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-hmm
DEBUG: select = by-e-value
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-hmm_0.976790898382696 -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.mod -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.blast.fa -db_size 3695564 -sw 2 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 4 -Emax 0.001 -dpstyle 0 -adpstyle 1 -select_mdalign 4 -select_md 4 -md_Emax 0.001 -simple_threshold 10000 -Motif_cutoff 0.0377358490566038 -align_short 3
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter0.a2m.gz
Scoring model iter1.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -205.879102
Database has 600 sequences with 293379 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-hmm_0.976790898382696.mult
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-hmm_0.976790898382696.mult /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.found.a2m
@@@@ rm -fv /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-hmm_0.976790898382696.* /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-hmm_0.719780652005102.*
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-hmm_0.976790898382696.dist'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-hmm_0.976790898382696.mstat'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-hmm_0.976790898382696.mult'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.found.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.found.a2m contains 237 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: training file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.train.a2m has 238 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.train.a2m -percent_id 0.8
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.train.a2m (238 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned.a2m.
Dropping 61 (of 238) sequences with > 80.0% id in aligned columns
177 sequences left after dropping 61 of 238 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned.a2m
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-from-align -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned.a2m.gz (177 sequences, 530 columns) as A2M alignment.
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.train.a2m -percent_id 0.920168067226891
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.train.a2m (238 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned-trainset.a2m.
Dropping 40 (of 238) sequences with > 92.0% id in aligned columns
198 sequences left after dropping 40 of 238 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned-trainset.a2m
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned-trainset.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.train.a2m -percent_id 0.462407690348867
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.train.a2m (238 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned-trainset.a2m.
Dropping 184 (of 238) sequences with > 46.2% id in aligned columns
54 sequences left after dropping 184 of 238 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned-trainset.a2m
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned-trainset.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned-trainset.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned-trainset.a2m.gz (54 sequences, 530 columns) as A2M alignment.
@@@@ /projects/compbio/bin/i686/buildmodel /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-retrain -insert /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-from-align.mod -train /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned-trainset.a2m.gz -binary_output 1 -many_files 1 -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -alphabet protein -dpstyle 1 -sw 2 -nmodels 1 -modellength 0 -Nseq 248 -sequence_weights /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-trainset.weightoutput -retrain_noise_scale 0.0001 -surgery_noise_scale 0.0001 -anneal_length 4 -reestimates 10 -synchfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.train.a2m -synchweight 15.4272486205415
Reading parameter file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-from-align.mod
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-from-align.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-thinned.a2m.gz
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.train.a2m (238 sequences, 530 columns) as A2M alignment.
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-----qhgr
a[526] - g[526] Q modi 527 i 527 M:D delete
a[527] - g[526] Q modi 528 i 527 M:D delete
a[528] - g[526] Q modi 529 i 527 M:D delete
a[529] - g[526] Q modi 530 i 527 M:D delete
a[530] - g[526] Q modi 531 i 527 I:D !delete type F
a[531] q g[526] Q modi 532 i 528 M:I insert
a[532] h g[527] H modi 532 i 529 M:I insert
a[533] g g[528] G modi 532 i 530 M:I insert
a[534] r g[529] R modi 532 i 531 M:I insert
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-QHGR
a[526] - g[526] Q modi 527 i 527 I:D !delete type F
-429.61 -88.43 -260.97 92.52 11 2 531
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-retrain.mod /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-retrain
DEBUG: HMM /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.mod has 531 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = a2m
DEBUG: align_style = viterbi
DEBUG: sw = semilocal
DEBUG: db_size = undef
DEBUG: e_max = 1
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm
DEBUG: select = all
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm_0.173336208298412 -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.mod -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.train.a2m -sw 1 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 8 -Emax 1 -dpstyle 0 -adpstyle 1 -select_align 8
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm-retrain
Scoring model iter1-buildmodel.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -279.936614
Database has 238 sequences with 97142 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm_0.173336208298412.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ gzip < /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm_0.173336208298412.a2m > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.raw-a2m.gz
@@@@ rm -fv /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm_0.173336208298412.* /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm_0.581562468022739.*
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm_0.173336208298412.a2m'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-hmm_0.173336208298412.dist'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.raw-a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ prettyalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.raw-a2m.gz -L 50000 -f | grep -v '^;' | gzip > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel-all.dots.gz
SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.caps.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam-thinned -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.a2m -percent_id 0.8
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.a2m (238 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam-thinned.a2m.
Dropping 67 (of 238) sequences with > 80.0% id in aligned columns
171 sequences left after dropping 67 of 238 sequences.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam-thinned.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam-from-align -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam-thinned.a2m -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam-thinned.a2m (171 sequences, 530 columns) as A2M alignment.
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam-from-align.mod /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam-thinned.a2m
@@@@ /projects/compbio/bin/i686/makelogo /projects/compbio/tmp/tmp_savings_29296 -i /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam.mod -logo_rel_entropy 1 -logo_savings_output /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam.savings
Reading parameter file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam.mod
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1_decontam-thinned.a2m
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
@@@@ gzip < /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1-buildmodel.a2m > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.a2m.gz
DEBUG: iteration /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2 thresh=0.004 prethresh=200
DEBUG: database=/projects/compbio/data/nrp/nr max_blast=4000
DEBUG: bits_per_col=0.5 prior=/projects/compbio/lib/recode3.20comp
DEBUG: muscle_maxhours=0.4 muscle_iters=0 buildmodel_iters=10
DEBUG ids_from_blast_querya2m:
DEBUG: e_value = 200
DEBUG: delete_tmp = 1
DEBUG: max_report = 4000
DEBUG: tmp_prefix = /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-blast
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/blastpgp -d /projects/compbio/data/nrp/nr -i /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-blast.blast-query -B /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-blast.blast-align -F F -I T -e 200 -b 4000 -v 4000 -m 9 -o /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.blast.blast-out
[blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file
[blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully
BLAST found 4000 ids
@@@@ /projects/compbio/bin/i686/fastacmd -d /projects/compbio/data/nrp/nr -i /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.blast.ids > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.blast.fa
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.blast.fa
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
Prefetched 4000 sequences to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.blast.fa
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-from-align -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.a2m.gz (238 sequences, 530 columns) as A2M alignment.
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-from-align.mod /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.a2m.gz
DEBUG: HMM /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.mod has 530 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = mult
DEBUG: align_style = viterbi
DEBUG: sw = local
DEBUG: db_size = 3695564
DEBUG: e_max = 0.004
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-hmm
DEBUG: select = by-e-value
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-hmm_0.938285809419682 -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.mod -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.blast.fa -db_size 3695564 -sw 2 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 4 -Emax 0.004 -dpstyle 0 -adpstyle 1 -select_mdalign 4 -select_md 4 -md_Emax 0.004 -simple_threshold 10000 -Motif_cutoff 0.0377358490566038 -align_short 3
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter1.a2m.gz
Scoring model iter2.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
....
Average NLL-Simple NULL score: -143.398094
Database has 4000 sequences with 1975756 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-hmm_0.938285809419682.mult
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-hmm_0.938285809419682.mult /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.found.a2m
@@@@ rm -fv /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-hmm_0.938285809419682.* /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-hmm_0.201854705718755.*
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-hmm_0.938285809419682.dist'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-hmm_0.938285809419682.mstat'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-hmm_0.938285809419682.mult'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.found.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.found.a2m contains 3063 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: training file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m has 3064 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m -percent_id 0.8
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m (3064 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned.a2m.
Dropping 872 (of 3064) sequences with > 80.0% id in aligned columns
2192 sequences left after dropping 872 of 3064 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned.a2m
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-from-align -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned.a2m.gz (2192 sequences, 530 columns) as A2M alignment.
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m -percent_id 0.532637075718016
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m (3064 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m.
Dropping 2202 (of 3064) sequences with > 53.3% id in aligned columns
862 sequences left after dropping 2202 of 3064 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m -percent_id 0.164054690954911
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m (3064 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m.
Dropping 3055 (of 3064) sequences with > 16.4% id in aligned columns
9 sequences left after dropping 3055 of 3064 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m -percent_id 0.275860895008197
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m (3064 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m.
Dropping 3025 (of 3064) sequences with > 27.6% id in aligned columns
39 sequences left after dropping 3025 of 3064 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m -percent_id 0.349570946882674
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m (3064 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m.
Dropping 2964 (of 3064) sequences with > 35.0% id in aligned columns
100 sequences left after dropping 2964 of 3064 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m.gz (100 sequences, 530 columns) as A2M alignment.
@@@@ /projects/compbio/bin/i686/buildmodel /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-retrain -insert /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-from-align.mod -train /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned-trainset.a2m.gz -binary_output 1 -many_files 1 -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -alphabet protein -dpstyle 1 -sw 2 -nmodels 1 -modellength 0 -Nseq 3074 -sequence_weights /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-trainset.weightoutput -retrain_noise_scale 0.0001 -surgery_noise_scale 0.0001 -anneal_length 4 -reestimates 10 -synchfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m -synchweight 55.3534100123922
Reading parameter file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-from-align.mod
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-from-align.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-thinned.a2m.gz
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m (3064 sequences, 530 columns) as A2M alignment.
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-----qhgr
a[526] - g[526] Q modi 527 i 527 M:D delete
a[527] - g[526] Q modi 528 i 527 M:D delete
a[528] - g[526] Q modi 529 i 527 M:D delete
a[529] - g[526] Q modi 530 i 527 M:D delete
a[530] - g[526] Q modi 531 i 527 I:D !delete type F
a[531] q g[526] Q modi 532 i 528 M:I insert
a[532] h g[527] H modi 532 i 529 M:I insert
a[533] g g[528] G modi 532 i 530 M:I insert
a[534] r g[529] R modi 532 i 531 M:I insert
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-QHGR
a[526] - g[526] Q modi 527 i 527 I:D !delete type F
-324.47 -86.93 -160.87 45.44 12 2 531
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-retrain.mod /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-retrain
DEBUG: HMM /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.mod has 531 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = a2m
DEBUG: align_style = viterbi
DEBUG: sw = semilocal
DEBUG: db_size = undef
DEBUG: e_max = 1
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm
DEBUG: select = all
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm_0.550355666012752 -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.mod -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.train.a2m -sw 1 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 8 -Emax 1 -dpstyle 0 -adpstyle 1 -select_align 8
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm-retrain
Scoring model iter2-buildmodel.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
....
Average NLL-Simple NULL score: -131.918418
Database has 3064 sequences with 1024802 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm_0.550355666012752.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ gzip < /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm_0.550355666012752.a2m > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.raw-a2m.gz
@@@@ rm -fv /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm_0.550355666012752.* /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm_0.688089454889862.*
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm_0.550355666012752.a2m'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-hmm_0.550355666012752.dist'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.raw-a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ prettyalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.raw-a2m.gz -L 50000 -f | grep -v '^;' | gzip > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel-all.dots.gz
SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.caps.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam-thinned -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.a2m -percent_id 0.8
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.a2m (3064 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam-thinned.a2m.
Dropping 924 (of 3064) sequences with > 80.0% id in aligned columns
2140 sequences left after dropping 924 of 3064 sequences.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam-thinned.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam-from-align -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam-thinned.a2m -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam-thinned.a2m (2140 sequences, 530 columns) as A2M alignment.
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam-from-align.mod /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam-thinned.a2m
@@@@ /projects/compbio/bin/i686/makelogo /projects/compbio/tmp/tmp_savings_29296 -i /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam.mod -logo_rel_entropy 1 -logo_savings_output /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam.savings
Reading parameter file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam.mod
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2_decontam-thinned.a2m
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
@@@@ gzip < /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2-buildmodel.a2m > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.a2m.gz
DEBUG: iteration /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3 thresh=0.01 prethresh=1000
DEBUG: database=/projects/compbio/data/nrp/nr max_blast=25000
DEBUG: bits_per_col=0.5 prior=/projects/compbio/lib/recode3.20comp
DEBUG: muscle_maxhours=0.9 muscle_iters=0 buildmodel_iters=10
DEBUG ids_from_blast_querya2m:
DEBUG: e_value = 1000
DEBUG: delete_tmp = 1
DEBUG: max_report = 25000
DEBUG: tmp_prefix = /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-blast
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/blastpgp -d /projects/compbio/data/nrp/nr -i /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-blast.blast-query -B /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-blast.blast-align -F F -I T -e 1000 -b 25000 -v 25000 -m 9 -o /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.blast.blast-out
[blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file
[blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully
BLAST found 22944 ids
@@@@ /projects/compbio/bin/i686/fastacmd -d /projects/compbio/data/nrp/nr -i /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.blast.ids > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.blast.fa
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.blast.fa
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
Prefetched 22944 sequences to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.blast.fa
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-from-align -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.a2m.gz (3064 sequences, 530 columns) as A2M alignment.
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-from-align.mod /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.a2m.gz
DEBUG: HMM /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.mod has 530 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = mult
DEBUG: align_style = viterbi
DEBUG: sw = local
DEBUG: db_size = 3695564
DEBUG: e_max = 0.01
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-hmm
DEBUG: select = by-e-value
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-hmm_0.654999919540387 -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.mod -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.blast.fa -db_size 3695564 -sw 2 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 4 -Emax 0.01 -dpstyle 0 -adpstyle 1 -select_mdalign 4 -select_md 4 -md_Emax 0.01 -simple_threshold 10000 -Motif_cutoff 0.0377358490566038 -align_short 3
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter2.a2m.gz
Scoring model iter3.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.......................
Average NLL-Simple NULL score: -105.968031
Database has 22944 sequences with 11350718 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-hmm_0.654999919540387.mult
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-hmm_0.654999919540387.mult /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.found.a2m
@@@@ rm -fv /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-hmm_0.654999919540387.* /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-hmm_0.853590378686061.*
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-hmm_0.654999919540387.dist'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-hmm_0.654999919540387.mstat'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-hmm_0.654999919540387.mult'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.found.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.found.a2m contains 19396 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: training file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m has 19397 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m -percent_id 0.8
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m (19397 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned.a2m.
Dropping 6668 (of 19397) sequences with > 80.0% id in aligned columns
12729 sequences left after dropping 6668 of 19397 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned.a2m
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-from-align -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned.a2m.gz (12729 sequences, 530 columns) as A2M alignment.
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m -percent_id 0.505155436407692
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m (19397 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.
Dropping 16546 (of 19397) sequences with > 50.5% id in aligned columns
2851 sequences left after dropping 16546 of 19397 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m -percent_id 0.135148126664317
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m (19397 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.
Dropping 19395 (of 19397) sequences with > 13.5% id in aligned columns
2 sequences left after dropping 19395 of 19397 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m -percent_id 0.234013716184199
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m (19397 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.
Dropping 19381 (of 19397) sequences with > 23.4% id in aligned columns
16 sequences left after dropping 19381 of 19397 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m -percent_id 0.305816060613754
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m (19397 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.
Dropping 19348 (of 19397) sequences with > 30.6% id in aligned columns
49 sequences left after dropping 19348 of 19397 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m -percent_id 0.357465020937237
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m (19397 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.
Dropping 19264 (of 19397) sequences with > 35.7% id in aligned columns
133 sequences left after dropping 19264 of 19397 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m -percent_id 0.334407449364253
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m (19397 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.
Dropping 19312 (of 19397) sequences with > 33.4% id in aligned columns
85 sequences left after dropping 19312 of 19397 sequences.
@@@@ gzip -9f /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-trainset -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.gz (85 sequences, 530 columns) as A2M alignment.
@@@@ /projects/compbio/bin/i686/buildmodel /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-retrain -insert /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-from-align.mod -train /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned-trainset.a2m.gz -binary_output 1 -many_files 1 -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -alphabet protein -dpstyle 1 -sw 2 -nmodels 1 -modellength 0 -Nseq 19407 -sequence_weights /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-trainset.weightoutput -retrain_noise_scale 0.0001 -surgery_noise_scale 0.0001 -anneal_length 4 -reestimates 10 -synchfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m -synchweight 139.273112983088
Reading parameter file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-from-align.mod
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-from-align.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-thinned.a2m.gz
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m (19397 sequences, 530 columns) as A2M alignment.
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-----qhgr
a[526] - g[526] Q modi 527 i 527 M:D delete
a[527] - g[526] Q modi 528 i 527 M:D delete
a[528] - g[526] Q modi 529 i 527 M:D delete
a[529] - g[526] Q modi 530 i 527 M:D delete
a[530] - g[526] Q modi 531 i 527 I:D !delete type F
a[531] q g[526] Q modi 532 i 528 M:I insert
a[532] h g[527] H modi 532 i 529 M:I insert
a[533] g g[528] G modi 532 i 530 M:I insert
a[534] r g[529] R modi 532 i 531 M:I insert
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-QHGR
a[526] - g[526] Q modi 527 i 527 I:D !delete type F
-322.29 -78.51 -154.73 41.46 10 2 531
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-retrain.mod /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-retrain
DEBUG: HMM /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.mod has 531 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = a2m
DEBUG: align_style = viterbi
DEBUG: sw = semilocal
DEBUG: db_size = undef
DEBUG: e_max = 1
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm
DEBUG: select = all
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm_0.302775296139682 -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.mod -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.train.a2m -sw 1 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 8 -Emax 1 -dpstyle 0 -adpstyle 1 -select_align 8
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm-retrain
Scoring model iter3-buildmodel.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
....................
Average NLL-Simple NULL score: -102.133481
Database has 19397 sequences with 6807202 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm_0.302775296139682.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ gzip < /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm_0.302775296139682.a2m > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.raw-a2m.gz
@@@@ rm -fv /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm_0.302775296139682.* /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm_0.603305825454662.*
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm_0.302775296139682.a2m'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-hmm_0.302775296139682.dist'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.raw-a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ prettyalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.raw-a2m.gz -L 50000 -f | grep -v '^;' | gzip > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel-all.dots.gz
SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.caps.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ uniqueseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam-thinned -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.a2m -percent_id 0.8
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.a2m (19397 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam-thinned.a2m.
Dropping 6515 (of 19397) sequences with > 80.0% id in aligned columns
12882 sequences left after dropping 6515 of 19397 sequences.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam-thinned.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam-from-align -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam-thinned.a2m -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam-thinned.a2m (12882 sequences, 530 columns) as A2M alignment.
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam-from-align.mod /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam-thinned.a2m
@@@@ /projects/compbio/bin/i686/makelogo /projects/compbio/tmp/tmp_savings_29296 -i /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam.mod -logo_rel_entropy 1 -logo_savings_output /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam.savings
Reading parameter file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam.mod
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3_decontam-thinned.a2m
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
@@@@ gzip < /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3-buildmodel.a2m > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.a2m.gz
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm-from-align -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.7 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.a2m.gz (19397 sequences, 530 columns) as A2M alignment.
@@@@ /projects/compbio/bin/i686/buildmodel /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm-retrain -insert /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm-from-align.mod -train /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.a2m.gz -binary_output 1 -many_files 1 -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -alphabet protein -dpstyle 1 -sw 2 -nmodels 1 -modellength 0 -Nseq 19407 -sequence_weights /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm-from-align.weightoutput -retrain_noise_scale 0.0001 -surgery_noise_scale 0.0001 -anneal_length 4 -reestimates 5 -synchfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.a2m.gz -synchweight 139.273112983088
Reading parameter file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm-from-align.mod
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm-from-align.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.a2m.gz
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.a2m.gz (19397 sequences, 530 columns) as A2M alignment.
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: msgkid------KILIVGGGTAGWMAASYLGKAL-QGTaDITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKfinwrtagEGTSEARELDggPDH----------------FYHSFGLLKYHEQIPLSHYWFDRSYRGKTV-------------EPFDYACYKEPVILDAnrsprrldgskvtnyawhfDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHG--r
a[0] m g[0] M modi 1 i 1 M:I insert
a[1] s g[1] S modi 1 i 2 M:I insert
a[2] g g[2] G modi 1 i 3 M:I insert
a[3] k g[3] K modi 1 i 4 M:I insert
a[4] i g[4] I modi 1 i 5 M:I insert
a[5] d g[5] D modi 1 i 6 M:I insert
a[6] - g[6] K modi 1 i 7 M:D delete
a[7] - g[6] K modi 2 i 7 M:D delete
a[8] - g[6] K modi 3 i 7 M:D delete
a[9] - g[6] K modi 4 i 7 M:D delete
a[10] - g[6] K modi 5 i 7 M:D delete
a[11] - g[6] K modi 6 i 7 M:D delete
a[34] - g[28] Q modi 29 i 29 M:D delete
a[38] a g[31] A modi 33 i 32 M:I insert
a[90] f g[83] F modi 84 i 84 M:I insert
a[91] i g[84] I modi 84 i 85 M:I insert
a[92] n g[85] N modi 84 i 86 M:I insert
a[93] w g[86] W modi 84 i 87 M:I insert
a[94] r g[87] R modi 84 i 88 M:I insert
a[95] t g[88] T modi 84 i 89 M:I insert
a[96] a g[89] A modi 84 i 90 M:I insert
a[97] g g[90] G modi 84 i 91 M:I insert
a[108] g g[101] G modi 94 i 102 M:I insert
a[109] g g[102] G modi 94 i 103 M:I insert
a[113] - g[106] F modi 97 i 107 M:D delete
a[114] - g[106] F modi 98 i 107 M:D delete
a[115] - g[106] F modi 99 i 107 M:D delete
a[116] - g[106] F modi 100 i 107 M:D delete
a[117] - g[106] F modi 101 i 107 M:D delete
a[118] - g[106] F modi 102 i 107 M:D delete
a[119] - g[106] F modi 103 i 107 M:D delete
a[120] - g[106] F modi 104 i 107 M:D delete
a[121] - g[106] F modi 105 i 107 M:D delete
a[122] - g[106] F modi 106 i 107 M:D delete
a[123] - g[106] F modi 107 i 107 M:D delete
a[124] - g[106] F modi 108 i 107 M:D delete
a[125] - g[106] F modi 109 i 107 M:D delete
a[126] - g[106] F modi 110 i 107 M:D delete
a[127] - g[106] F modi 111 i 107 M:D delete
a[128] - g[106] F modi 112 i 107 M:D delete
a[159] - g[136] E modi 143 i 137 M:D delete
a[160] - g[136] E modi 144 i 137 M:D delete
a[161] - g[136] E modi 145 i 137 M:D delete
a[162] - g[136] E modi 146 i 137 M:D delete
a[163] - g[136] E modi 147 i 137 M:D delete
a[164] - g[136] E modi 148 i 137 M:D delete
a[165] - g[136] E modi 149 i 137 M:D delete
a[166] - g[136] E modi 150 i 137 M:D delete
a[167] - g[136] E modi 151 i 137 M:D delete
a[168] - g[136] E modi 152 i 137 M:D delete
a[169] - g[136] E modi 153 i 137 M:D delete
a[170] - g[136] E modi 154 i 137 M:D delete
a[171] - g[136] E modi 155 i 137 M:D delete
a[188] n g[152] N modi 172 i 153 M:I insert
a[189] r g[153] R modi 172 i 154 M:I insert
a[190] s g[154] S modi 172 i 155 M:I insert
a[191] p g[155] P modi 172 i 156 M:I insert
a[192] r g[156] R modi 172 i 157 M:I insert
a[193] r g[157] R modi 172 i 158 M:I insert
a[194] l g[158] L modi 172 i 159 M:I insert
a[195] d g[159] D modi 172 i 160 M:I insert
a[196] g g[160] G modi 172 i 161 M:I insert
a[197] s g[161] S modi 172 i 162 M:I insert
a[198] k g[162] K modi 172 i 163 M:I insert
a[199] v g[163] V modi 172 i 164 M:I insert
a[200] t g[164] T modi 172 i 165 M:I insert
a[201] n g[165] N modi 172 i 166 M:I insert
a[202] y g[166] Y modi 172 i 167 M:I insert
a[203] a g[167] A modi 172 i 168 M:I insert
a[204] w g[168] W modi 172 i 169 M:I insert
a[205] h g[169] H modi 172 i 170 M:I insert
a[206] f g[170] F modi 172 i 171 M:I insert
a[565] - g[529] R modi 530 i 530 M:D delete
a[566] - g[529] R modi 531 i 530 I:D !delete type F
a[567] r g[529] R modi 532 i 531 M:I insert
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGlliNKAMEEPFLDM---SDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQH--gr-
a[232] l g[232] L modi 233 i 233 M:I insert
a[233] l g[233] L modi 233 i 234 M:I insert
a[234] i g[234] I modi 233 i 235 M:I insert
a[246] - g[246] S modi 244 i 247 M:D delete
a[247] - g[246] S modi 245 i 247 M:D delete
a[248] - g[246] S modi 246 i 247 M:D delete
a[531] - g[528] G modi 529 i 529 M:D delete
a[532] - g[528] G modi 530 i 529 I:D !delete type F
a[533] g g[528] G modi 531 i 530 M:I insert
a[534] r g[529] R modi 531 i 531 M:I insert
a[535] - g[530] modi 531 i 532 M:D delete
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: msgkid------KILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGegtseARELDGGPDH-----FYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQH-GR
a[0] m g[0] M modi 1 i 1 M:I insert
a[1] s g[1] S modi 1 i 2 M:I insert
a[2] g g[2] G modi 1 i 3 M:I insert
a[3] k g[3] K modi 1 i 4 M:I insert
a[4] i g[4] I modi 1 i 5 M:I insert
a[5] d g[5] D modi 1 i 6 M:I insert
a[6] - g[6] K modi 1 i 7 M:D delete
a[7] - g[6] K modi 2 i 7 M:D delete
a[8] - g[6] K modi 3 i 7 M:D delete
a[9] - g[6] K modi 4 i 7 M:D delete
a[10] - g[6] K modi 5 i 7 M:D delete
a[11] - g[6] K modi 6 i 7 M:D delete
a[97] e g[91] E modi 92 i 92 M:I insert
a[98] g g[92] G modi 92 i 93 M:I insert
a[99] t g[93] T modi 92 i 94 M:I insert
a[100] s g[94] S modi 92 i 95 M:I insert
a[101] e g[95] E modi 92 i 96 M:I insert
a[112] - g[106] F modi 102 i 107 M:D delete
a[113] - g[106] F modi 103 i 107 M:D delete
a[114] - g[106] F modi 104 i 107 M:D delete
a[115] - g[106] F modi 105 i 107 M:D delete
a[116] - g[106] F modi 106 i 107 M:D delete
a[539] - g[528] G modi 529 i 529 I:D !delete type F
-256.61 -20.26 -120.52 36.88 20 4 531
@@@@ cp -p /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm-retrain.mod /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm-retrain
DEBUG: HMM /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final.mod has 531 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = a2m
DEBUG: align_style = viterbi
DEBUG: sw = semilocal
DEBUG: db_size = undef
DEBUG: e_max = 1
DEBUG: sort = 1
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm
DEBUG: select = all
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.034690703581763 -modelfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final.mod -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/iter3.a2m.gz -sw 1 -subtract_null 4 -sort 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 8 -Emax 1 -dpstyle 0 -adpstyle 1 -select_align 8
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm-retrain
Scoring model final.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
....................
Average NLL-Simple NULL score: -113.882404
Database has 19397 sequences with 6807202 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.034690703581763.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/sortseq /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.627280803459911 -alignfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.034690703581763.a2m -distfile /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.034690703581763.dist
SAM: /projects/compbio/bin/i686/sortseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:07
Reading alignment file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.034690703581763.a2m (19397 sequences, 531 columns) as A2M alignment.
Reading scores from file /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.034690703581763.dist
Writing sequence output to /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.627280803459911.a2m.
@@@@ gzip < /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.627280803459911.a2m > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final.raw-a2m.gz
@@@@ rm -fv /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.034690703581763.* /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.627280803459911.*
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.034690703581763.a2m'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.034690703581763.dist'
removed `/var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-hmm_0.627280803459911.a2m'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final.raw-a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ prettyalign /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final.raw-a2m.gz -L 50000 -f | grep -v '^;' | gzip > /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final-all.dots.gz
SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296/final.caps.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ rm -rf /var/tmp/t06-karplus-shaw.cse.ucsc.edu-29296
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"SAM_t06 multiple alignment in a2m format" \
T0334.t06.a2m.gz >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gunzip -c T0334.t06.a2m.gz > tmp.a2m
/projects/compbio/experiments/protein-predict/SAM_T02/scripts/a2m2html -a2m_in tmp.a2m > T0334.t06.pa.html
Looking up 39854 sequence IDs on NCBI.
SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/prettyalign v3.5 (July 15, 2005) compiled 07/18/05_14:54:15
rm tmp.a2m
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"SAM_t06 multiple alignment in pretty html format" \
T0334.t06.pa.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/bin/scripts/w0.5 T0334.t06.a2m.gz T0334.t06.w0.5.mod.tmp
Reading /projects/compbio/bin/scripts/sam-t2k.conf
Path: /projects/compbio/bin/scripts:/projects/compbio/bin/i686:/usr/local/bin:/usr/local/gnu/bin:/sbin:/usr/sbin:/bin:/usr/bin
Reading /projects/compbio/bin/scripts/sam-t2k.conf
Path: /projects/compbio/bin/scripts:/projects/compbio/bin/i686:/usr/local/bin:/usr/local/gnu/bin:/sbin:/usr/sbin:/bin:/usr/bin
@@@@ chgrp protein /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30150
@@@@ uniqueseq /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30150/tmp -alignfile T0334.t06.a2m.gz \
-a protein -percent_id 0.8
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file T0334.t06.a2m.gz (19397 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30150/tmp.a2m.
Dropping 8372 (of 19397) sequences with > 80.0% id in aligned columns
11025 sequences left after dropping 8372 of 19397 sequences.
@@@@ modelfromalign /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30150/tmp -alignfile /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30150/tmp.a2m \
-insert /projects/compbio/lib/fssp-trained.regularizer \
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-prior_library /projects/compbio/lib/recode3.20comp \
-binary_output 1 -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30150/tmp.a2m (11025 sequences, 530 columns) as A2M alignment.
@@@@ cp -f /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30150/tmp.mod T0334.t06.w0.5.mod.tmp
@@@@ rm -rf /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30150 > /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/bin/i686/uniqueseq unique-tmp -alignfile T0334.t06.a2m.gz -percent_id 0.90
SAM: /projects/compbio/bin/i686/uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file T0334.t06.a2m.gz (19397 sequences, 530 columns) as A2M alignment.
Writing sequence output to unique-tmp.a2m.
Dropping 5433 (of 19397) sequences with > 90.0% id in aligned columns
13964 sequences left after dropping 5433 of 19397 sequences.
gzip -9f unique-tmp.a2m
mv unique-tmp.a2m.gz T0334.t06-thin90.a2m.gz
echo ReadAlphabet /projects/compbio/lib/alphabet/str.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net >> tmp.script
echo ReadA2M T0334.t06-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t06.str2.seq >> tmp.script
echo PrintRDB T0334.t06.str2.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 2 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/str.alphabet
# command:# Neural network set to t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t06-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t06-thin90.a2m with 13964 sequences, total weight= 13964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.745659 bits.
# After reading T0334.t06-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for str2
WARNING: BackgroundProbs for str2 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t06.str2.seq
# command:WARNING: BackgroundProbs for str2 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t06.str2.rdb
# command:rm tmp.script
/projects/compbio/bin/i686/makelogo T0334.t06.w0.5-logo -i T0334.t06.w0.5.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t06 w0.5" \
-logo_caption_f T0334.t06.str2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_savings_output T0334.t06.w0.5.saves
Reading parameter file T0334.t06.w0.5.mod
T0334.t06.w0.5.mod(1): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30150/tmp.a2m
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t06.w0.5-logo.eps' < /dev/null
Distilling T0334.t06.w0.5-logo.eps (233,652 bytes)
3.7 seconds (0:04) 233,652 bytes PS => 26,931 bytes PDF (12%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"SAM_t06 multiple alignment---sequence logo" \
T0334.t06.w0.5-logo \
eps pdf >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/models.97/scripts2k/pick-key-residues \
-minbits 1.5 \
-minfreq 0.04 \
-first_residue 1 \
T0334.t06.w0.5.key-residues
/projects/compbio/experiments/protein-predict/yeast/scripts/key-to-rasmol \
-set_name conserved_t06 \
< T0334.t06.w0.5.key-residues > T0334.t06.conserved.rasmol
ln -sf T0334.t06.conserved.rasmol conserved_t06
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for highlighting in rasmol" \
conserved_t06 >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
date
Mon Jun 19 11:33:47 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t04 build_multiple_alignment build_pretty build_mod w0.5_logo conserved_script 1.small_divider
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.str2
echo "making T04 alignment"
making T04 alignment
/projects/compbio/experiments/models.97/scripts04/target04 \
-seed T0334.a2m -out T0334.t04.a2m.gz \
-tmp /var/tmp -db /projects/compbio/data/nrp/nr \
-final_align viterbi \
-thresh 0.0001 -thresh 0.0005 -thresh 0.002 -thresh 0.01
target04 -out T0334.t04.a2m.gz -seed T0334.a2m -threshold 0.0001 -threshold 0.0005 -threshold 0.002 -threshold 0.01 -db /projects/compbio/data/nrp/nr -tmp /var/tmp
Working directory= /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222
@@@@ /projects/compbio/bin/i686/fastacmd -I T -d /projects/compbio/data/nrp/nr
Database /projects/compbio/data/nrp/nr has 3695564 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db T0334.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: seed T0334.a2m has 530 alignmnent columns
Cleaned up seed is in T0334.a2m, with guide sequence 'T0334'
DEBUG: iteration /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1 thresh=0.0001 prethresh=10
DEBUG: database=/projects/compbio/data/nrp/nr max_blast=3000
DEBUG: bits_per_col=0.5 prior=/projects/compbio/lib/recode3.20comp
DEBUG: muscle_maxhours=0.1 muscle_iters=0 buildmodel_iters=10
DEBUG ids_from_blast_querya2m:
DEBUG: e_value = 10
DEBUG: delete_tmp = 1
DEBUG: max_report = 3000
DEBUG: tmp_prefix = /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-blast
@@@@ /projects/compbio/bin/i686/blastpgp -d /projects/compbio/data/nrp/nr -i /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-blast.blast-query -B /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-blast.blast-align -F F -I T -e 10 -b 3000 -v 3000 -m 9 -o /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.blast.blast-out
[blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file
[blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully
BLAST found 153 ids
@@@@ /projects/compbio/bin/i686/fastacmd -d /projects/compbio/data/nrp/nr -i /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.blast.ids > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.blast.fa
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.blast.fa
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
Prefetched 153 sequences to /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.blast.fa
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-from-align -alignfile T0334.a2m -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file T0334.a2m (1 sequence, 530 columns) as A2M alignment.
@@@@ cp -p /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-from-align.mod /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.mod(2): Reading initial model from MODEL -- Model from alignment file T0334.a2m
DEBUG: HMM /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.mod has 530 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = mult
DEBUG: align_style = viterbi
DEBUG: sw = local
DEBUG: db_size = 3695564
DEBUG: e_max = 0.0001
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-hmm
DEBUG: select = by-e-value
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-hmm_0.374319015673191 -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.mod -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.blast.fa -db_size 3695564 -sw 2 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 4 -Emax 0.0001 -dpstyle 0 -adpstyle 1 -select_mdalign 4 -select_md 4 -md_Emax 0.0001 -simple_threshold 10000 -Motif_cutoff 0.0377358490566038 -align_short 3
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.mod(2): Reading initial model from MODEL -- Model from alignment file T0334.a2m
Scoring model iter1.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -282.387408
Database has 153 sequences with 77422 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-hmm_0.374319015673191.mult
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ cp -p /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-hmm_0.374319015673191.mult /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.found.a2m
@@@@ rm -fv /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-hmm_0.374319015673191.* /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-hmm_0.505517838563797.*
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-hmm_0.374319015673191.dist'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-hmm_0.374319015673191.mstat'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-hmm_0.374319015673191.mult'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.found.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.found.a2m contains 127 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: training file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.train.a2m has 128 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm-from-align -alignfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.train.a2m -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.train.a2m (128 sequences, 530 columns) as A2M alignment.
@@@@ /projects/compbio/bin/i686/buildmodel /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm-retrain -insert /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm-from-align.mod -train /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.train.a2m -binary_output 1 -many_files 1 -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -alphabet protein -dpstyle 1 -sw 2 -nmodels 1 -modellength 0 -Nseq 138 -sequence_weights /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm-from-align.weightoutput -retrain_noise_scale 0.0001 -surgery_noise_scale 0.0001 -anneal_length 4 -reestimates 10 -synchfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.train.a2m -synchweight 11.3137084989848
Reading parameter file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm-from-align.mod
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm-from-align.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.train.a2m
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.train.a2m (128 sequences, 530 columns) as A2M alignment.
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHG--r
a[529] - g[529] R modi 530 i 530 M:D delete
a[530] - g[529] R modi 531 i 530 I:D !delete type F
a[531] r g[529] R modi 532 i 531 M:I insert
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHG-R
a[529] - g[529] R modi 530 i 530 I:D !delete type F
-499.37 -60.50 -421.03 76.66 12 2 531
@@@@ cp -p /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm-retrain.mod /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm-retrain
DEBUG: HMM /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel.mod has 531 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = a2m
DEBUG: align_style = viterbi
DEBUG: sw = semilocal
DEBUG: db_size = undef
DEBUG: e_max = 1
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm
DEBUG: select = all
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm_0.815442742344192 -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel.mod -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.train.a2m -sw 1 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 8 -Emax 1 -dpstyle 0 -adpstyle 1 -select_align 8
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm-retrain
Scoring model iter1-buildmodel.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -452.289948
Database has 128 sequences with 62543 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm_0.815442742344192.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ gzip < /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm_0.815442742344192.a2m > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel.raw-a2m.gz
@@@@ rm -fv /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm_0.815442742344192.* /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm_0.0237971831463852.*
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm_0.815442742344192.a2m'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-hmm_0.815442742344192.dist'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel.raw-a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ prettyalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel.raw-a2m.gz -L 50000 -f | grep -v '^;' | gzip > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel-all.dots.gz
SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1-buildmodel.caps.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: iteration /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2 thresh=0.0005 prethresh=10
DEBUG: database=/projects/compbio/data/nrp/nr max_blast=3000
DEBUG: bits_per_col=0.5 prior=/projects/compbio/lib/recode3.20comp
DEBUG: muscle_maxhours=0.4 muscle_iters=0 buildmodel_iters=10
DEBUG ids_from_blast_querya2m:
DEBUG: e_value = 10
DEBUG: delete_tmp = 1
DEBUG: max_report = 3000
DEBUG: tmp_prefix = /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-blast
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/blastpgp -d /projects/compbio/data/nrp/nr -i /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-blast.blast-query -B /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-blast.blast-align -F F -I T -e 10 -b 3000 -v 3000 -m 9 -o /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.blast.blast-out
[blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file
[blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully
BLAST found 910 ids
@@@@ /projects/compbio/bin/i686/fastacmd -d /projects/compbio/data/nrp/nr -i /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.blast.ids > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.blast.fa
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.blast.fa
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
Prefetched 910 sequences to /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.blast.fa
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-from-align -alignfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.a2m.gz (128 sequences, 530 columns) as A2M alignment.
@@@@ cp -p /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-from-align.mod /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.a2m.gz
DEBUG: HMM /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.mod has 530 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = mult
DEBUG: align_style = viterbi
DEBUG: sw = local
DEBUG: db_size = 3695564
DEBUG: e_max = 0.0005
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-hmm
DEBUG: select = by-e-value
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-hmm_0.521293198271948 -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.mod -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.blast.fa -db_size 3695564 -sw 2 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 4 -Emax 0.0005 -dpstyle 0 -adpstyle 1 -select_mdalign 4 -select_md 4 -md_Emax 0.0005 -simple_threshold 10000 -Motif_cutoff 0.0377358490566038 -align_short 3
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter1.a2m.gz
Scoring model iter2.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -182.143767
Database has 910 sequences with 440886 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-hmm_0.521293198271948.mult
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ cp -p /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-hmm_0.521293198271948.mult /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.found.a2m
@@@@ rm -fv /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-hmm_0.521293198271948.* /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-hmm_0.0128042833308903.*
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-hmm_0.521293198271948.dist'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-hmm_0.521293198271948.mstat'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-hmm_0.521293198271948.mult'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.found.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.found.a2m contains 353 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: training file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.train.a2m has 354 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm-from-align -alignfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.train.a2m -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.train.a2m (354 sequences, 530 columns) as A2M alignment.
@@@@ /projects/compbio/bin/i686/buildmodel /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm-retrain -insert /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm-from-align.mod -train /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.train.a2m -binary_output 1 -many_files 1 -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -alphabet protein -dpstyle 1 -sw 2 -nmodels 1 -modellength 0 -Nseq 364 -sequence_weights /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm-from-align.weightoutput -retrain_noise_scale 0.0001 -surgery_noise_scale 0.0001 -anneal_length 4 -reestimates 10 -synchfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.train.a2m -synchweight 18.8148877222268
Reading parameter file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm-from-align.mod
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm-from-align.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.train.a2m
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.train.a2m (354 sequences, 530 columns) as A2M alignment.
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-----qhgr
a[526] - g[526] Q modi 527 i 527 M:D delete
a[527] - g[526] Q modi 528 i 527 M:D delete
a[528] - g[526] Q modi 529 i 527 M:D delete
a[529] - g[526] Q modi 530 i 527 M:D delete
a[530] - g[526] Q modi 531 i 527 I:D !delete type F
a[531] q g[526] Q modi 532 i 528 M:I insert
a[532] h g[527] H modi 532 i 529 M:I insert
a[533] g g[528] G modi 532 i 530 M:I insert
a[534] r g[529] R modi 532 i 531 M:I insert
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-QHGR
a[526] - g[526] Q modi 527 i 527 I:D !delete type F
-421.53 -31.12 -218.02 117.37 14 2 531
@@@@ cp -p /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm-retrain.mod /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm-retrain
DEBUG: HMM /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel.mod has 531 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = a2m
DEBUG: align_style = viterbi
DEBUG: sw = semilocal
DEBUG: db_size = undef
DEBUG: e_max = 1
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm
DEBUG: select = all
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm_0.742413026416706 -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel.mod -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.train.a2m -sw 1 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 8 -Emax 1 -dpstyle 0 -adpstyle 1 -select_align 8
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm-retrain
Scoring model iter2-buildmodel.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -243.871425
Database has 354 sequences with 133419 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm_0.742413026416706.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ gzip < /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm_0.742413026416706.a2m > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel.raw-a2m.gz
@@@@ rm -fv /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm_0.742413026416706.* /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm_0.826428261970978.*
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm_0.742413026416706.a2m'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-hmm_0.742413026416706.dist'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel.raw-a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ prettyalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel.raw-a2m.gz -L 50000 -f | grep -v '^;' | gzip > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel-all.dots.gz
SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2-buildmodel.caps.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: iteration /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3 thresh=0.002 prethresh=10
DEBUG: database=/projects/compbio/data/nrp/nr max_blast=3000
DEBUG: bits_per_col=0.5 prior=/projects/compbio/lib/recode3.20comp
DEBUG: muscle_maxhours=0.9 muscle_iters=0 buildmodel_iters=10
DEBUG ids_from_blast_querya2m:
DEBUG: e_value = 10
DEBUG: delete_tmp = 1
DEBUG: max_report = 3000
DEBUG: tmp_prefix = /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-blast
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/blastpgp -d /projects/compbio/data/nrp/nr -i /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-blast.blast-query -B /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-blast.blast-align -F F -I T -e 10 -b 3000 -v 3000 -m 9 -o /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.blast.blast-out
[blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file
[blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully
BLAST found 3000 ids
@@@@ /projects/compbio/bin/i686/fastacmd -d /projects/compbio/data/nrp/nr -i /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.blast.ids > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.blast.fa
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.blast.fa
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
Prefetched 3000 sequences to /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.blast.fa
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-from-align -alignfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.a2m.gz (354 sequences, 530 columns) as A2M alignment.
@@@@ cp -p /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-from-align.mod /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.a2m.gz
DEBUG: HMM /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.mod has 530 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = mult
DEBUG: align_style = viterbi
DEBUG: sw = local
DEBUG: db_size = 3695564
DEBUG: e_max = 0.002
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-hmm
DEBUG: select = by-e-value
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-hmm_0.351110912592691 -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.mod -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.blast.fa -db_size 3695564 -sw 2 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 4 -Emax 0.002 -dpstyle 0 -adpstyle 1 -select_mdalign 4 -select_md 4 -md_Emax 0.002 -simple_threshold 10000 -Motif_cutoff 0.0377358490566038 -align_short 3
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter2.a2m.gz
Scoring model iter3.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
...
Average NLL-Simple NULL score: -150.085302
Database has 3000 sequences with 1411298 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-hmm_0.351110912592691.mult
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ cp -p /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-hmm_0.351110912592691.mult /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.found.a2m
@@@@ rm -fv /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-hmm_0.351110912592691.* /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-hmm_0.234900235603263.*
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-hmm_0.351110912592691.dist'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-hmm_0.351110912592691.mstat'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-hmm_0.351110912592691.mult'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.found.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.found.a2m contains 2823 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: training file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.train.a2m has 2824 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm-from-align -alignfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.train.a2m -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.train.a2m (2824 sequences, 530 columns) as A2M alignment.
@@@@ /projects/compbio/bin/i686/buildmodel /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm-retrain -insert /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm-from-align.mod -train /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.train.a2m -binary_output 1 -many_files 1 -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -alphabet protein -dpstyle 1 -sw 2 -nmodels 1 -modellength 0 -Nseq 2834 -sequence_weights /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm-from-align.weightoutput -retrain_noise_scale 0.0001 -surgery_noise_scale 0.0001 -anneal_length 4 -reestimates 10 -synchfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.train.a2m -synchweight 53.1413210223457
Reading parameter file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm-from-align.mod
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm-from-align.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.train.a2m
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.train.a2m (2824 sequences, 530 columns) as A2M alignment.
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEgtsEARELDGGP---DHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-----qhgr
a[92] g g[92] G modi 93 i 93 M:I insert
a[93] t g[93] T modi 93 i 94 M:I insert
a[94] s g[94] S modi 93 i 95 M:I insert
a[104] - g[104] D modi 102 i 105 M:D delete
a[105] - g[104] D modi 103 i 105 M:D delete
a[106] - g[104] D modi 104 i 105 M:D delete
a[529] - g[526] Q modi 527 i 527 M:D delete
a[530] - g[526] Q modi 528 i 527 M:D delete
a[531] - g[526] Q modi 529 i 527 M:D delete
a[532] - g[526] Q modi 530 i 527 M:D delete
a[533] - g[526] Q modi 531 i 527 I:D !delete type F
a[534] q g[526] Q modi 532 i 528 M:I insert
a[535] h g[527] H modi 532 i 529 M:I insert
a[536] g g[528] G modi 532 i 530 M:I insert
a[537] r g[529] R modi 532 i 531 M:I insert
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-QHGR
a[526] - g[526] Q modi 527 i 527 I:D !delete type F
-259.02 -29.67 -149.34 46.59 15 2 531
@@@@ cp -p /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm-retrain.mod /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm-retrain
DEBUG: HMM /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel.mod has 531 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = a2m
DEBUG: align_style = viterbi
DEBUG: sw = semilocal
DEBUG: db_size = undef
DEBUG: e_max = 1
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm
DEBUG: select = all
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm_0.353471529657707 -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel.mod -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.train.a2m -sw 1 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 8 -Emax 1 -dpstyle 0 -adpstyle 1 -select_align 8
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm-retrain
Scoring model iter3-buildmodel.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
...
Average NLL-Simple NULL score: -165.280143
Database has 2824 sequences with 994560 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm_0.353471529657707.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ gzip < /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm_0.353471529657707.a2m > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel.raw-a2m.gz
@@@@ rm -fv /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm_0.353471529657707.* /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm_0.714095268014354.*
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm_0.353471529657707.a2m'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-hmm_0.353471529657707.dist'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel.raw-a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ prettyalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel.raw-a2m.gz -L 50000 -f | grep -v '^;' | gzip > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel-all.dots.gz
SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3-buildmodel.caps.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: iteration /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4 thresh=0.01 prethresh=10
DEBUG: database=/projects/compbio/data/nrp/nr max_blast=3000
DEBUG: bits_per_col=0.5 prior=/projects/compbio/lib/recode3.20comp
DEBUG: muscle_maxhours=1.6 muscle_iters=0 buildmodel_iters=10
DEBUG ids_from_blast_querya2m:
DEBUG: e_value = 10
DEBUG: delete_tmp = 1
DEBUG: max_report = 3000
DEBUG: tmp_prefix = /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-blast
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/blastpgp -d /projects/compbio/data/nrp/nr -i /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-blast.blast-query -B /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-blast.blast-align -F F -I T -e 10 -b 3000 -v 3000 -m 9 -o /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.blast.blast-out
[blastpgp] WARNING: posFindAlignmentDimensions: Attempting to recover data from multiple alignment file
[blastpgp] WARNING: posProcessAlignment: Alignment recovered successfully
BLAST found 3000 ids
@@@@ /projects/compbio/bin/i686/fastacmd -d /projects/compbio/data/nrp/nr -i /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.blast.ids > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.blast.fa
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.blast.fa
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
Prefetched 3000 sequences to /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.blast.fa
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-from-align -alignfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.a2m.gz (2824 sequences, 530 columns) as A2M alignment.
@@@@ cp -p /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-from-align.mod /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.a2m.gz
DEBUG: HMM /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.mod has 530 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = mult
DEBUG: align_style = viterbi
DEBUG: sw = local
DEBUG: db_size = 3695564
DEBUG: e_max = 0.01
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-hmm
DEBUG: select = by-e-value
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-hmm_0.639031163672492 -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.mod -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.blast.fa -db_size 3695564 -sw 2 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 4 -Emax 0.01 -dpstyle 0 -adpstyle 1 -select_mdalign 4 -select_md 4 -md_Emax 0.01 -simple_threshold 10000 -Motif_cutoff 0.0377358490566038 -align_short 3
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.mod(2): Reading initial model from MODEL -- Model from alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter3.a2m.gz
Scoring model iter4.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
...
Average NLL-Simple NULL score: -184.175667
Database has 3000 sequences with 1434501 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-hmm_0.639031163672492.mult
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ cp -p /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-hmm_0.639031163672492.mult /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.found.a2m
@@@@ rm -fv /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-hmm_0.639031163672492.* /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-hmm_0.970578733889415.*
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-hmm_0.639031163672492.dist'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-hmm_0.639031163672492.mstat'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-hmm_0.639031163672492.mult'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.found.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.found.a2m contains 2999 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
DEBUG: training file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.train.a2m has 3000 sequences
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.train.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm-from-align -alignfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.train.a2m -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.train.a2m (3000 sequences, 530 columns) as A2M alignment.
@@@@ /projects/compbio/bin/i686/buildmodel /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm-retrain -insert /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm-from-align.mod -train /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.train.a2m -binary_output 1 -many_files 1 -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -alphabet protein -dpstyle 1 -sw 2 -nmodels 1 -modellength 0 -Nseq 3010 -sequence_weights /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm-from-align.weightoutput -retrain_noise_scale 0.0001 -surgery_noise_scale 0.0001 -anneal_length 4 -reestimates 10 -synchfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.train.a2m -synchweight 54.7722557505166
Reading parameter file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm-from-align.mod
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm-from-align.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.train.a2m
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.train.a2m (3000 sequences, 530 columns) as A2M alignment.
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-----qhgr
a[526] - g[526] Q modi 527 i 527 M:D delete
a[527] - g[526] Q modi 528 i 527 M:D delete
a[528] - g[526] Q modi 529 i 527 M:D delete
a[529] - g[526] Q modi 530 i 527 M:D delete
a[530] - g[526] Q modi 531 i 527 I:D !delete type F
a[531] q g[526] Q modi 532 i 528 M:I insert
a[532] h g[527] H modi 532 i 529 M:I insert
a[533] g g[528] G modi 532 i 530 M:I insert
a[534] r g[529] R modi 532 i 531 M:I insert
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQ-QHGR
a[526] - g[526] Q modi 527 i 527 I:D !delete type F
-260.96 -64.06 -175.71 31.35 12 2 531
@@@@ cp -p /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm-retrain.mod /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm-retrain
DEBUG: HMM /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel.mod has 531 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = a2m
DEBUG: align_style = viterbi
DEBUG: sw = semilocal
DEBUG: db_size = undef
DEBUG: e_max = 1
DEBUG: sort = 0
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm
DEBUG: select = all
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm_0.726656886928538 -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel.mod -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.train.a2m -sw 1 -subtract_null 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 8 -Emax 1 -dpstyle 0 -adpstyle 1 -select_align 8
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm-retrain
Scoring model iter4-buildmodel.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
...
Average NLL-Simple NULL score: -193.075354
Database has 3000 sequences with 1183280 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm_0.726656886928538.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ gzip < /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm_0.726656886928538.a2m > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel.raw-a2m.gz
@@@@ rm -fv /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm_0.726656886928538.* /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm_0.529416774094653.*
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm_0.726656886928538.a2m'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-hmm_0.726656886928538.dist'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel.raw-a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ prettyalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel.raw-a2m.gz -L 50000 -f | grep -v '^;' | gzip > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel-all.dots.gz
SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4-buildmodel.caps.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/modelfromalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm-from-align -alignfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.a2m.gz -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -binary_output 1 -alphabet protein -aweight_method 1 -aweight_bits 0.7 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: /projects/compbio/bin/i686/modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.a2m.gz (3000 sequences, 530 columns) as A2M alignment.
@@@@ /projects/compbio/bin/i686/buildmodel /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm-retrain -insert /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm-from-align.mod -train /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.a2m.gz -binary_output 1 -many_files 1 -prior_library /projects/compbio/lib/recode3.20comp -insert /projects/compbio/lib/cheap_gap.regularizer -alphabet protein -dpstyle 1 -sw 2 -nmodels 1 -modellength 0 -Nseq 3010 -sequence_weights /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm-from-align.weightoutput -retrain_noise_scale 0.0001 -surgery_noise_scale 0.0001 -anneal_length 4 -reestimates 5 -synchfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.a2m.gz -synchweight 54.7722557505166
Reading parameter file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm-from-align.mod
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm-from-align.mod(22): Reading MODEL -- Model from alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.a2m.gz
Reading parameter file /projects/compbio/lib/cheap_gap.regularizer
/projects/compbio/lib/cheap_gap.regularizer(1): Reading REGULARIZER: cheap gaps regularizer (mall-opt.1comp regularizer)
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.a2m.gz (3000 sequences, 530 columns) as A2M alignment.
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRgktVEPFDYACYKEPVILD---ANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHG--r
a[132] g g[132] G modi 133 i 133 M:I insert
a[133] k g[133] K modi 133 i 134 M:I insert
a[134] t g[134] T modi 133 i 135 M:I insert
a[151] - g[151] A modi 149 i 152 M:D delete
a[152] - g[151] A modi 150 i 152 M:D delete
a[153] - g[151] A modi 151 i 152 M:D delete
a[532] - g[529] R modi 530 i 530 M:D delete
a[533] - g[529] R modi 531 i 530 I:D !delete type F
a[534] r g[529] R modi 532 i 531 M:I insert
Guide: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHGR
Align: MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPDKSLNPVLTARFNREIETMFDDTRDFIQAHFYFSPRTDTPFWRANKELRLADGMQEKIDMYRAGMAINAPASDDAQLYYGNFEEEFRNFWNNSNYYCVLAGLGLVPDAPSPRLAHMPQATESVDEVFGAVKDRQRNLLETLPSLHEFLRQQHG-R
a[529] - g[529] R modi 530 i 530 I:D !delete type F
-313.53 -80.13 -195.98 37.02 10 2 531
@@@@ cp -p /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm-retrain.mod /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final.mod
@@@@ /projects/compbio/bin/i686/checkmodel foo -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final.mod
SAM: /projects/compbio/bin/i686/checkmodel v3.5 (July 15, 2005) compiled 05/31/06_11:54:09
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm-retrain
DEBUG: HMM /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final.mod has 531 match states
DEBUG a2m_from_hmm_seqs:
DEBUG: return_type = a2m
DEBUG: align_style = viterbi
DEBUG: sw = semilocal
DEBUG: db_size = undef
DEBUG: e_max = 1
DEBUG: sort = 1
DEBUG: delete_tmp = 1
DEBUG: tmp_prefix = /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm
DEBUG: select = all
@@@@ /projects/compbio/bin/i686/hmmscore /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.871244613138792 -modelfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final.mod -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/iter4.a2m.gz -sw 1 -subtract_null 4 -sort 4 -alphabet protein -fimtrans -1.0 -fimstrength 1.0 -jump_in_prob 0.1 -jump_out_prob 0.1 -a2mdots 0 -select_score 8 -Emax 1 -dpstyle 0 -adpstyle 1 -select_align 8
SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final.mod(2): Reading initial model from MODEL -- Final model for run /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm-retrain
Scoring model final.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
...
Average NLL-Simple NULL score: -201.710750
Database has 3000 sequences with 1183280 residues.
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.871244613138792.a2m
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ /projects/compbio/bin/i686/sortseq /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.498478335103076 -alignfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.871244613138792.a2m -distfile /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.871244613138792.dist
SAM: /projects/compbio/bin/i686/sortseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:07
Reading alignment file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.871244613138792.a2m (3000 sequences, 531 columns) as A2M alignment.
Reading scores from file /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.871244613138792.dist
Writing sequence output to /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.498478335103076.a2m.
@@@@ gzip < /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.498478335103076.a2m > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final.raw-a2m.gz
@@@@ rm -fv /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.871244613138792.* /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.498478335103076.*
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.871244613138792.a2m'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.871244613138792.dist'
removed `/var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-hmm_0.498478335103076.a2m'
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final.raw-a2m.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ prettyalign /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final.raw-a2m.gz -L 50000 -f | grep -v '^;' | gzip > /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final-all.dots.gz
SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
@@@@ /projects/compbio/bin/i686/checkseq foo -db /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222/final.caps.gz
SAM: /projects/compbio/bin/i686/checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
@@@@ rm -rf /var/tmp/t04-karplus-shaw.cse.ucsc.edu-30222
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"SAM_t04 multiple alignment in a2m format" \
T0334.t04.a2m.gz >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gunzip -c T0334.t04.a2m.gz > tmp.a2m
/projects/compbio/experiments/protein-predict/SAM_T02/scripts/a2m2html -a2m_in tmp.a2m > T0334.t04.pa.html
Looking up 6232 sequence IDs on NCBI.
SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/prettyalign v3.5 (July 15, 2005) compiled 07/18/05_14:54:15
rm tmp.a2m
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"SAM_t04 multiple alignment in pretty html format" \
T0334.t04.pa.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/bin/scripts/w0.5 T0334.t04.a2m.gz T0334.t04.w0.5.mod.tmp
Reading /projects/compbio/bin/scripts/sam-t2k.conf
Path: /projects/compbio/bin/scripts:/projects/compbio/bin/i686:/usr/local/bin:/usr/local/gnu/bin:/sbin:/usr/sbin:/bin:/usr/bin
Reading /projects/compbio/bin/scripts/sam-t2k.conf
Path: /projects/compbio/bin/scripts:/projects/compbio/bin/i686:/usr/local/bin:/usr/local/gnu/bin:/sbin:/usr/sbin:/bin:/usr/bin
@@@@ chgrp protein /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30655
@@@@ uniqueseq /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30655/tmp -alignfile T0334.t04.a2m.gz \
-a protein -percent_id 0.8
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file T0334.t04.a2m.gz (3000 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30655/tmp.a2m.
Dropping 1490 (of 3000) sequences with > 80.0% id in aligned columns
1510 sequences left after dropping 1490 of 3000 sequences.
@@@@ modelfromalign /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30655/tmp -alignfile /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30655/tmp.a2m \
-insert /projects/compbio/lib/fssp-trained.regularizer \
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-prior_library /projects/compbio/lib/recode3.20comp \
-binary_output 1 -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30655/tmp.a2m (1510 sequences, 530 columns) as A2M alignment.
@@@@ cp -f /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30655/tmp.mod T0334.t04.w0.5.mod.tmp
@@@@ rm -rf /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30655 > /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/bin/i686/uniqueseq unique-tmp -alignfile T0334.t04.a2m.gz -percent_id 0.90
SAM: /projects/compbio/bin/i686/uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file T0334.t04.a2m.gz (3000 sequences, 530 columns) as A2M alignment.
Writing sequence output to unique-tmp.a2m.
Dropping 1031 (of 3000) sequences with > 90.0% id in aligned columns
1969 sequences left after dropping 1031 of 3000 sequences.
gzip -9f unique-tmp.a2m
mv unique-tmp.a2m.gz T0334.t04-thin90.a2m.gz
echo ReadAlphabet /projects/compbio/lib/alphabet/str.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net >> tmp.script
echo ReadA2M T0334.t04-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t04.str2.seq >> tmp.script
echo PrintRDB T0334.t04.str2.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 2 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/str.alphabet
# command:# Neural network set to t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t04-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t04-thin90.a2m with 1969 sequences, total weight= 1969 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.919369 bits.
# After reading T0334.t04-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for str2
WARNING: BackgroundProbs for str2 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t04.str2.seq
# command:WARNING: BackgroundProbs for str2 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t04.str2.rdb
# command:rm tmp.script
/projects/compbio/bin/i686/makelogo T0334.t04.w0.5-logo -i T0334.t04.w0.5.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t04 w0.5" \
-logo_caption_f T0334.t04.str2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_savings_output T0334.t04.w0.5.saves
Reading parameter file T0334.t04.w0.5.mod
T0334.t04.w0.5.mod(1): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30655/tmp.a2m
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t04.w0.5-logo.eps' < /dev/null
Distilling T0334.t04.w0.5-logo.eps (233,456 bytes)
3.2 seconds (0:03) 233,456 bytes PS => 26,768 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"SAM_t04 multiple alignment---sequence logo" \
T0334.t04.w0.5-logo \
eps pdf >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/models.97/scripts2k/pick-key-residues \
-minbits 1.5 \
-minfreq 0.04 \
-first_residue 1 \
T0334.t04.w0.5.key-residues
/projects/compbio/experiments/protein-predict/yeast/scripts/key-to-rasmol \
-set_name conserved_t04 \
< T0334.t04.w0.5.key-residues > T0334.t04.conserved.rasmol
ln -sf T0334.t04.conserved.rasmol conserved_t04
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for highlighting in rasmol" \
conserved_t04 >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
date
Mon Jun 19 12:25:27 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t2k build_multiple_alignment build_pretty build_mod w0.5_logo conserved_script 1.small_divider
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.str2
/projects/compbio/experiments/models.97/scripts2k/target2k -out T0334.t2k \
-final_adpstyle 5 \
-blast_max_report 10000 \
-db /projects/compbio/data/nrp/nr \
-seed T0334.a2m -tmp_dir /var/tmp
Reading /projects/compbio/experiments/models.97/scripts2k/sam-t2k.conf
Path: /projects/compbio/experiments/models.97/scripts2k:/projects/compbio/bin/i686:/usr/local/bin:/usr/local/gnu/bin:/sbin:/usr/sbin:/bin:/usr/bin
@@@@ chgrp protein /var/tmp/target2k-shaw.cse.ucsc.edu-30714
@@@@ cp /projects/compbio/experiments/protein-predict/casp7/T0334/T0334.a2m m0.a2m
@@@@ checkseq foo -alphabet protein -db m0.a2m > init.check
SAM: checkseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:08
Done with sequence reading
# About to count sequences in /projects/compbio/data/nrp/nr
# Using fastacmd to count sequences from ncbi-blast index
/projects/compbio/experiments/models.97/scripts2k/target2k: E-value thresholds used are
prefilter: 0.01, actual: 0.0001
prefilter: 1, actual: 0.0002
prefilter: 10, actual: 0.001
prefilter: 400, actual: 0.005
/projects/compbio/experiments/models.97/scripts2k/target2k: aweight_bits are 0.8, 0.7, 0.6, 0.5
/projects/compbio/experiments/models.97/scripts2k/target2k: db_size= 3695564 reverse_diff= 4
/projects/compbio/experiments/models.97/scripts2k/target2k: blast_prefilter: ncbi-blast-prefilter
/projects/compbio/experiments/models.97/scripts2k/target2k: blast_max_report= 10000
/projects/compbio/experiments/models.97/scripts2k/target2k: db=/projects/compbio/data/nrp/nr
/projects/compbio/experiments/models.97/scripts2k/target2k: aweight_method=1 aweight_exponent=10
/projects/compbio/experiments/models.97/scripts2k/target2k: force_seed=1 constraints=1
/projects/compbio/experiments/models.97/scripts2k/target2k: jump_in=0.2 jump_out=1 fimstrength=1 fimtrans=-1
@@@@ ncbi-blast-prefilter -tmp_dir /var/tmp/target2k-shaw.cse.ucsc.edu-30714 -out prefilter -seed m0.a2m -prefilter_thresholds 0.01,1,10,400 -db /projects/compbio/data/nrp/nr -blast_max_report 10000
Reading /projects/compbio/experiments/models.97/scripts2k/sam-t2k.conf
Path: /projects/compbio/experiments/models.97/scripts2k:/projects/compbio/bin/i686:/usr/local/bin:/usr/local/gnu/bin:/sbin:/usr/sbin:/bin:/usr/bin
@@@@ chgrp protein /var/tmp/target2k-shaw.cse.ucsc.edu-30714/blast-prefilter-shaw.cse.ucsc.edu-30726
/projects/compbio/experiments/models.97/scripts2k/ncbi-blast-prefilter: E-value thresholds used are
For /var/tmp/target2k-shaw.cse.ucsc.edu-30714/prefilter_1.fa, 0.01
For /var/tmp/target2k-shaw.cse.ucsc.edu-30714/prefilter_2.fa, 1
For /var/tmp/target2k-shaw.cse.ucsc.edu-30714/prefilter_3.fa, 10
For /var/tmp/target2k-shaw.cse.ucsc.edu-30714/prefilter_4.fa, 400
/projects/compbio/experiments/models.97/scripts2k/ncbi-blast-prefilter: db=/projects/compbio/data/nrp/nr
@@@@ uniqueseq init -alignfile /var/tmp/target2k-shaw.cse.ucsc.edu-30714/m0.a2m -a protein -a2mdots 0
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file /var/tmp/target2k-shaw.cse.ucsc.edu-30714/m0.a2m (1 sequence, 530 columns) as A2M alignment.
Writing sequence output to init.a2m.
No sequences have been dropped.
@@@@ /projects/compbio/bin/i686/blastall -p blastp -d /projects/compbio/data/nrp/nr -i 1.fasta -e 400 -I -v 10000 -b 0 -o 1.fasta-blast.out
Searched 3695,564 sequences
# parsing ncbi-blastp output
@@@@ rm -f 1.fasta < /dev/null
@@@@ rm -f 1.fasta-blast.out < /dev/null
# Extracting hits in FASTA format from /projects/compbio/data/nrp/nr
@@@@ /projects/compbio/bin/i686/fastacmd -d /projects/compbio/data/nrp/nr -i all.ids > /var/tmp/target2k-shaw.cse.ucsc.edu-30714/prefilter_4.fa
@@@@ rm -rf /var/tmp/target2k-shaw.cse.ucsc.edu-30714/blast-prefilter-shaw.cse.ucsc.edu-30726 < /dev/null
@@@@ modelfromalign unused -alignfile m0.a2m \
-constraints_from_align 1 -constraints_out m0.cst
SAM: modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file m0.a2m (1 sequence, 530 columns) as A2M alignment.
# About to count sequences in m0.a2m
# Using grep to count sequences, since NCBI-BLAST index not found
# About to count sequences in prefilter_1.fa
# Using grep to count sequences, since NCBI-BLAST index not found
@@@@ modelfromalign tmp_1-a -alignfile m0.a2m \
-insert /projects/compbio/lib/gap1.5.regularizer \
-aweight_bits 0.8\
-fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
-aweight_method 1\
-aweight_exponent 10 -constraints m0.cst -constraints_out tmp_1-a.cst
Reading parameter file /projects/compbio/lib/gap1.5.regularizer
/projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10
SAM: modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file m0.a2m (1 sequence, 530 columns) as A2M alignment.
@@@@ hmmscore tmp_1-a -i tmp_1-a.mod -fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
-dpstyle 0 \
-subtract_null 4 -sort 2 \
-db_size 3695564 \
-adpstyle 1 \
-align_short 0 \
-simple_threshold -28.3329841113664 -Emax 0.0001 \
-mdEmax 0.0001\
-select_score 4 \
-select_seq 4 -select_mdalign 4 -select_md 4 -Motifcutoff 0.0377358490566038 -db prefilter_1.fa -constraints tmp_1-a.cst -constraints_out tmp_1-a-md.cst
Reading parameter file tmp_1-a.mod
tmp_1-a.mod(22): Reading MODEL -- Model from alignment file m0.a2m
SAM: hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
Scoring model tmp_1-a.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -238.622616
Database has 127 sequences with 64450 residues.
@@@@ sortseq tmp_1-a-sort -alignfile tmp_1-a.mult \
-NLLfile tmp_1-a.mstat -a2mdots 0
SAM: sortseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:07
Reading alignment file tmp_1-a.mult (126 sequences, 530 columns) as A2M alignment.
Reading scores from file tmp_1-a.mstat
Writing sequence output to tmp_1-a-sort.a2m.
@@@@ cat m0.a2m tmp_1-a-sort.a2m > tmp_1-a.train.seq
@@@@ cat m0.cst tmp_1-a-md.cst > tmp_1-a.train.cst
# About to count sequences in tmp_1-a.train.seq
# Using grep to count sequences, since NCBI-BLAST index not found
# num_seqs=127 nll_thresh=-24.3329841113664 frac_id=0.897351852871314
@@@@ uniqueseq thinned_tmp -alignfile tmp_1-a.train.seq -a protein \
-percent_id 0.897351852871314 -a2mdots 0
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file tmp_1-a.train.seq (127 sequences, 530 columns) as A2M alignment.
Writing sequence output to thinned_tmp.a2m.
Dropping 20 (of 127) sequences with > 89.7% id in aligned columns
107 sequences left after dropping 20 of 127 sequences.
@@@@ modelfromalign junk_for_weights \
-alignfile tmp_1-a.train.seq \
-aweight_bits 0.8\
-fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
-aweight_method 1\
-aweight_exponent 10
SAM: modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file tmp_1-a.train.seq (107 sequences, 530 columns) as A2M alignment.
@@@@ buildmodel tmp_1-b -insert tmp_1-a.mod\
-fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
-modellength 0 \
-internal_weight 0 \
-anneal_length 2 \
-many_files 1 \
-Nseq 20000\
-nsurgery 0 \
-fracinsert 0.2 \
-cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \
-train tmp_1-a.train.seq \
-nmodels 1\
-insert /projects/compbio/lib/gap1.5.regularizer -sequence_weights tmp_1-a.w -constraints tmp_1-a.train.cst
Reading parameter file tmp_1-a.mod
tmp_1-a.mod(22): Reading MODEL -- Model from alignment file m0.a2m
Reading parameter file /projects/compbio/lib/gap1.5.regularizer
/projects/compbio/lib/gap1.5.regularizer(1): Reading REGULARIZER: gap1.5. Weak regularizer, gaps average 1.5, matches average 10
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
-1551.50 -46.40 -298.52 130.80 17 1 531
@@@@ hmmscore tmp_1-b -i tmp_1-b.mod -fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
-dpstyle 0 \
-subtract_null 4 -sort 2 \
-db_size 3695564 \
-db m0.a2m -db tmp_1-a.sel \
-select_score 4 \
-select_seq 4 \
-simple_threshold -28.3329841113664 -Emax 0.0001 \
-select_mdalign 4 -select_md 4 \
-adpstyle 1 \
-Motifcutoff 0.0377358490566038 \
-align_short 5 -mdEmax 0.0001 -constraints tmp_1-a.train.cst -constraints_out m_1.cst
Reading parameter file tmp_1-b.mod
tmp_1-b.mod(18): Reading MODEL -- Final model for run tmp_1-b (internally generated FIMs removed)
SAM: hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
Scoring model tmp_1-b.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -309.331324
Database has 127 sequences with 64399 residues.
@@@@ cp -f tmp_1-b.mult m_1.a2m
# About to count sequences in prefilter_2.fa
# Using grep to count sequences, since NCBI-BLAST index not found
@@@@ modelfromalign tmp_2-a -alignfile m_1.a2m \
-insert /projects/compbio/lib/stiff-gap5.regularizer \
-aweight_bits 0.7\
-fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
-aweight_method 1\
-aweight_exponent 10 -constraints m_1.cst -constraints_out tmp_2-a.cst
Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer
/projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10
SAM: modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file m_1.a2m (127 sequences, 530 columns) as A2M alignment.
@@@@ hmmscore tmp_2-a -i tmp_2-a.mod -fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
-dpstyle 0 \
-subtract_null 4 -sort 2 \
-db_size 3695564 \
-adpstyle 1 \
-align_short 0 \
-simple_threshold -27.6398369307794 -Emax 0.0002 \
-mdEmax 0.0002\
-select_score 4 \
-select_seq 4 -select_mdalign 4 -select_md 4 -Motifcutoff 0.0377358490566038 -db prefilter_2.fa -constraints tmp_2-a.cst -constraints_out tmp_2-a-md.cst
Reading parameter file tmp_2-a.mod
tmp_2-a.mod(22): Reading MODEL -- Model from alignment file m_1.a2m
SAM: hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
Scoring model tmp_2-a.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -431.721019
Database has 136 sequences with 69089 residues.
@@@@ sortseq tmp_2-a-sort -alignfile tmp_2-a.mult \
-NLLfile tmp_2-a.mstat -a2mdots 0
SAM: sortseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:07
Reading alignment file tmp_2-a.mult (131 sequences, 530 columns) as A2M alignment.
Reading scores from file tmp_2-a.mstat
Writing sequence output to tmp_2-a-sort.a2m.
@@@@ cat m0.a2m tmp_2-a-sort.a2m > tmp_2-a.train.seq
@@@@ cat m0.cst tmp_2-a-md.cst > tmp_2-a.train.cst
# About to count sequences in tmp_2-a.train.seq
# Using grep to count sequences, since NCBI-BLAST index not found
# num_seqs=132 nll_thresh=-23.6398369307794 frac_id=0.885629747144493
@@@@ uniqueseq thinned_tmp -alignfile tmp_2-a.train.seq -a protein \
-percent_id 0.885629747144493 -a2mdots 0
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file tmp_2-a.train.seq (132 sequences, 530 columns) as A2M alignment.
Writing sequence output to thinned_tmp.a2m.
Dropping 22 (of 132) sequences with > 88.6% id in aligned columns
110 sequences left after dropping 22 of 132 sequences.
@@@@ modelfromalign junk_for_weights \
-alignfile tmp_2-a.train.seq \
-aweight_bits 0.7\
-fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
-aweight_method 1\
-aweight_exponent 10
SAM: modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file tmp_2-a.train.seq (110 sequences, 530 columns) as A2M alignment.
@@@@ buildmodel tmp_2-b -insert tmp_2-a.mod\
-fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
-modellength 0 \
-internal_weight 0 \
-anneal_length 2 \
-many_files 1 \
-Nseq 20000\
-nsurgery 0 \
-fracinsert 0.2 \
-cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \
-train tmp_2-a.train.seq \
-nmodels 1\
-insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_2-a.w -constraints tmp_2-a.train.cst
Reading parameter file tmp_2-a.mod
tmp_2-a.mod(22): Reading MODEL -- Model from alignment file m_1.a2m
Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer
/projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
-1551.59 -43.56 -276.55 133.83 7 1 531
@@@@ hmmscore tmp_2-b -i tmp_2-b.mod -fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
-dpstyle 0 \
-subtract_null 4 -sort 2 \
-db_size 3695564 \
-db m0.a2m -db tmp_2-a.sel \
-select_score 4 \
-select_seq 4 \
-simple_threshold -27.6398369307794 -Emax 0.0002 \
-select_mdalign 4 -select_md 4 \
-adpstyle 1 \
-Motifcutoff 0.0377358490566038 \
-align_short 5 -mdEmax 0.0002 -constraints tmp_2-a.train.cst -constraints_out m_2.cst
Reading parameter file tmp_2-b.mod
tmp_2-b.mod(18): Reading MODEL -- Final model for run tmp_2-b (internally generated FIMs removed)
SAM: hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
Scoring model tmp_2-b.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -276.150536
Database has 134 sequences with 68418 residues.
@@@@ cp -f tmp_2-b.mult m_2.a2m
# About to count sequences in prefilter_3.fa
# Using grep to count sequences, since NCBI-BLAST index not found
@@@@ modelfromalign tmp_3-a -alignfile m_2.a2m \
-insert /projects/compbio/lib/stiff-gap5.regularizer \
-aweight_bits 0.6\
-fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
-aweight_method 1\
-aweight_exponent 10 -constraints m_2.cst -constraints_out tmp_3-a.cst
Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer
/projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10
SAM: modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file m_2.a2m (133 sequences, 530 columns) as A2M alignment.
@@@@ hmmscore tmp_3-a -i tmp_3-a.mod -fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
-dpstyle 0 \
-subtract_null 4 -sort 2 \
-db_size 3695564 \
-adpstyle 1 \
-align_short 0 \
-simple_threshold -26.0303990181288 -Emax 0.001 \
-mdEmax 0.001\
-select_score 4 \
-select_seq 4 -select_mdalign 4 -select_md 4 -Motifcutoff 0.0377358490566038 -db prefilter_3.fa -constraints tmp_3-a.cst -constraints_out tmp_3-a-md.cst
Reading parameter file tmp_3-a.mod
tmp_3-a.mod(22): Reading MODEL -- Model from alignment file m_2.a2m
SAM: hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
Scoring model tmp_3-a.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -367.693347
Database has 163 sequences with 82383 residues.
@@@@ sortseq tmp_3-a-sort -alignfile tmp_3-a.mult \
-NLLfile tmp_3-a.mstat -a2mdots 0
SAM: sortseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:07
Reading alignment file tmp_3-a.mult (148 sequences, 530 columns) as A2M alignment.
Reading scores from file tmp_3-a.mstat
Writing sequence output to tmp_3-a-sort.a2m.
@@@@ cat m0.a2m tmp_3-a-sort.a2m > tmp_3-a.train.seq
@@@@ cat m0.cst tmp_3-a-md.cst > tmp_3-a.train.cst
# About to count sequences in tmp_3-a.train.seq
# Using grep to count sequences, since NCBI-BLAST index not found
# num_seqs=149 nll_thresh=-22.0303990181288 frac_id=0.851482806110413
@@@@ uniqueseq thinned_tmp -alignfile tmp_3-a.train.seq -a protein \
-percent_id 0.851482806110413 -a2mdots 0
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file tmp_3-a.train.seq (149 sequences, 530 columns) as A2M alignment.
Writing sequence output to thinned_tmp.a2m.
Dropping 32 (of 149) sequences with > 85.1% id in aligned columns
117 sequences left after dropping 32 of 149 sequences.
@@@@ modelfromalign junk_for_weights \
-alignfile tmp_3-a.train.seq \
-aweight_bits 0.6\
-fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
-aweight_method 1\
-aweight_exponent 10
SAM: modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file tmp_3-a.train.seq (117 sequences, 530 columns) as A2M alignment.
@@@@ buildmodel tmp_3-b -insert tmp_3-a.mod\
-fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
-modellength 0 \
-internal_weight 0 \
-anneal_length 2 \
-many_files 1 \
-Nseq 20000\
-nsurgery 0 \
-fracinsert 0.2 \
-cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \
-train tmp_3-a.train.seq \
-nmodels 1\
-insert /projects/compbio/lib/stiff-gap5.regularizer -sequence_weights tmp_3-a.w -constraints tmp_3-a.train.cst
Reading parameter file tmp_3-a.mod
tmp_3-a.mod(22): Reading MODEL -- Model from alignment file m_2.a2m
Reading parameter file /projects/compbio/lib/stiff-gap5.regularizer
/projects/compbio/lib/stiff-gap5.regularizer(1): Reading REGULARIZER: gap5. stiff regularizer, gaps averge 5, matches average 10
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
-1551.21 -39.40 -237.31 135.12 7 1 531
@@@@ hmmscore tmp_3-b -i tmp_3-b.mod -fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
-dpstyle 0 \
-subtract_null 4 -sort 2 \
-db_size 3695564 \
-db m0.a2m -db tmp_3-a.sel \
-select_score 4 \
-select_seq 4 \
-simple_threshold -26.0303990181288 -Emax 0.001 \
-select_mdalign 4 -select_md 4 \
-adpstyle 1 \
-Motifcutoff 0.0377358490566038 \
-align_short 5 -mdEmax 0.001 -constraints tmp_3-a.train.cst -constraints_out m_3.cst
Reading parameter file tmp_3-b.mod
tmp_3-b.mod(18): Reading MODEL -- Final model for run tmp_3-b (internally generated FIMs removed)
SAM: hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
Scoring model tmp_3-b.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -227.505859
Database has 154 sequences with 77226 residues.
@@@@ cp -f tmp_3-b.mult m_3.a2m
# About to count sequences in prefilter_4.fa
# Using grep to count sequences, since NCBI-BLAST index not found
@@@@ modelfromalign tmp_4-a -alignfile m_3.a2m \
-insert /projects/compbio/lib/fssp-trained.regularizer \
-aweight_bits 0.5\
-fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
-aweight_method 1\
-aweight_exponent 10 -constraints m_3.cst -constraints_out tmp_4-a.cst
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file m_3.a2m (144 sequences, 530 columns) as A2M alignment.
@@@@ hmmscore tmp_4-a -i tmp_4-a.mod -fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
-dpstyle 0 \
-subtract_null 4 -sort 2 \
-db_size 3695564 \
-adpstyle 1 \
-align_short 0 \
-simple_threshold -24.4209611046123 -Emax 0.005 \
-mdEmax 0.005\
-select_score 4 \
-select_seq 4 -select_mdalign 4 -select_md 4 -Motifcutoff 0.0377358490566038 -db prefilter_4.fa -constraints tmp_4-a.cst -constraints_out tmp_4-a-md.cst
Reading parameter file tmp_4-a.mod
tmp_4-a.mod(22): Reading MODEL -- Model from alignment file m_3.a2m
SAM: hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
Scoring model tmp_4-a.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -104.904620
Database has 671 sequences with 357112 residues.
@@@@ sortseq tmp_4-a-sort -alignfile tmp_4-a.mult \
-NLLfile tmp_4-a.mstat -a2mdots 0
SAM: sortseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:07
Reading alignment file tmp_4-a.mult (223 sequences, 530 columns) as A2M alignment.
Reading scores from file tmp_4-a.mstat
Writing sequence output to tmp_4-a-sort.a2m.
@@@@ cat m0.a2m tmp_4-a-sort.a2m > tmp_4-a.train.seq
@@@@ cat m0.cst tmp_4-a-md.cst > tmp_4-a.train.cst
# About to count sequences in tmp_4-a.train.seq
# Using grep to count sequences, since NCBI-BLAST index not found
# num_seqs=224 nll_thresh=-20.4209611046123 frac_id=0.770670156138297
@@@@ uniqueseq thinned_tmp -alignfile tmp_4-a.train.seq -a protein \
-percent_id 0.770670156138297 -a2mdots 0
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file tmp_4-a.train.seq (224 sequences, 530 columns) as A2M alignment.
Writing sequence output to thinned_tmp.a2m.
Dropping 90 (of 224) sequences with > 77.1% id in aligned columns
134 sequences left after dropping 90 of 224 sequences.
@@@@ modelfromalign junk_for_weights \
-alignfile tmp_4-a.train.seq \
-aweight_bits 0.5\
-fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
-aweight_method 1\
-aweight_exponent 10
SAM: modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file tmp_4-a.train.seq (134 sequences, 530 columns) as A2M alignment.
@@@@ buildmodel tmp_4-b -insert tmp_4-a.mod\
-fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
-modellength 0 \
-internal_weight 0 \
-anneal_length 2 \
-many_files 1 \
-Nseq 20000\
-nsurgery 0 \
-fracinsert 0.2 \
-cutinsert 0.25 -cutmatch 0.2 -initial_noise 0.0001 -anneal_noise 0.000001 \
-train tmp_4-a.train.seq \
-nmodels 1\
-insert /projects/compbio/lib/fssp-trained.regularizer -sequence_weights tmp_4-a.w -constraints tmp_4-a.train.cst
Reading parameter file tmp_4-a.mod
tmp_4-a.mod(22): Reading MODEL -- Model from alignment file m_3.a2m
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: buildmodel v3.5 (July 15, 2005) compiled 05/31/06_11:53:55
-1551.04 -30.20 -194.72 134.48 8 1 531
@@@@ hmmscore tmp_4-b -i tmp_4-b.mod -fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
-dpstyle 0 \
-subtract_null 4 -sort 2 \
-db_size 3695564 \
-db m0.a2m -db tmp_4-a.sel \
-select_score 4 \
-select_seq 4 \
-simple_threshold -24.4209611046123 -Emax 0.005 \
-select_mdalign 4 -select_md 4 \
-adpstyle 1 \
-Motifcutoff 0.0377358490566038 \
-align_short 5 -mdEmax 0.005 -constraints tmp_4-a.train.cst -constraints_out m_4.cst
Reading parameter file tmp_4-b.mod
tmp_4-b.mod(18): Reading MODEL -- Final model for run tmp_4-b (internally generated FIMs removed)
SAM: hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
Scoring model tmp_4-b.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -148.052229
Database has 251 sequences with 118983 residues.
@@@@ cp -f tmp_4-b.mult m_4.a2m
@@@@ modelfromalign tmp_5-a -alignfile m_4.a2m \
-insert /projects/compbio/lib/fssp-trained.regularizer \
-aweight_bits 0.5\
-fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1 \
-aweight_method 1\
-aweight_exponent 10 -constraints m_4.cst -constraints_out tmp_5-a.cst
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file m_4.a2m (178 sequences, 530 columns) as A2M alignment.
@@@@ hmmscore tmp_5-a -i tmp_5-a.mod -fimtrans -1\
-fimstrength 1\
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-binary_output 1\
-prior_library /projects/compbio/lib/recode3.20comp \
-a2mdots 0 \
-a protein \
-sw 2 -jump_in_prob 0.2 -jump_out_prob 1\
-dpstyle 0 \
-subtract_null 4 -sort 2 \
-db_size 3695564 \
-adpstyle 5 \
-align_short 0 \
-simple_threshold -24.4209611046123 -Emax 0.005 \
-mdEmax 0.005\
-select_score 4 \
-select_seq 4 -select_mdalign 4 -select_md 4 -Motifcutoff 0.0377358490566038 -db prefilter_4.fa -constraints tmp_5-a.cst -constraints_out tmp_5-a-md.cst
Reading parameter file tmp_5-a.mod
tmp_5-a.mod(22): Reading MODEL -- Model from alignment file m_4.a2m
SAM: hmmscore v3.5 (July 15, 2005) compiled 06/01/06_09:03:53
Scoring model tmp_5-a.mod
WARNING: reverse null model and E-value calculations are
being made without model calibration. Use -calibrate first
for better results.
Calculating Distances (. = 1000 sequences)
.
Average NLL-Simple NULL score: -108.152804
Database has 671 sequences with 357112 residues.
@@@@ sortseq tmp_5-a-sort -alignfile tmp_5-a.mult \
-NLLfile tmp_5-a.mstat -a2mdots 0
SAM: sortseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:07
Reading alignment file tmp_5-a.mult (305 sequences, 530 columns) as A2M alignment.
Reading scores from file tmp_5-a.mstat
Writing sequence output to tmp_5-a-sort.a2m.
@@@@ cat m0.a2m tmp_5-a-sort.a2m > tmp_5-a.train.seq
@@@@ cat m0.cst tmp_5-a-md.cst > tmp_5-a.train.cst
@@@@ cp tmp_5-a.train.seq /projects/compbio/experiments/protein-predict/casp7/T0334/T0334.t2k.a2m
@@@@ cp tmp_5-a.train.cst /projects/compbio/experiments/protein-predict/casp7/T0334/T0334.t2k.cst
@@@@ rm -rf /var/tmp/target2k-shaw.cse.ucsc.edu-30714 < /dev/null
gzip -f T0334.t2k.a2m
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"SAM_t2k multiple alignment in a2m format" \
T0334.t2k.a2m.gz >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gunzip -c T0334.t2k.a2m.gz > tmp.a2m
/projects/compbio/experiments/protein-predict/SAM_T02/scripts/a2m2html -a2m_in tmp.a2m > T0334.t2k.pa.html
Looking up 609 sequence IDs on NCBI.
SAM: /projects/compbio/experiments/protein-predict/SAM_T02/bin_freeze/sam/prettyalign v3.5 (July 15, 2005) compiled 07/18/05_14:54:15
rm tmp.a2m
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"SAM_t2k multiple alignment in pretty html format" \
T0334.t2k.pa.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/bin/scripts/w0.5 T0334.t2k.a2m.gz T0334.t2k.w0.5.mod.tmp
Reading /projects/compbio/bin/scripts/sam-t2k.conf
Path: /projects/compbio/bin/scripts:/projects/compbio/bin/i686:/usr/local/bin:/usr/local/gnu/bin:/sbin:/usr/sbin:/bin:/usr/bin
Reading /projects/compbio/bin/scripts/sam-t2k.conf
Path: /projects/compbio/bin/scripts:/projects/compbio/bin/i686:/usr/local/bin:/usr/local/gnu/bin:/sbin:/usr/sbin:/bin:/usr/bin
@@@@ chgrp protein /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30858
@@@@ uniqueseq /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30858/tmp -alignfile T0334.t2k.a2m.gz \
-a protein -percent_id 0.8
SAM: uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file T0334.t2k.a2m.gz (306 sequences, 530 columns) as A2M alignment.
Writing sequence output to /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30858/tmp.a2m.
Dropping 133 (of 306) sequences with > 80.0% id in aligned columns
173 sequences left after dropping 133 of 306 sequences.
@@@@ modelfromalign /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30858/tmp -alignfile /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30858/tmp.a2m \
-insert /projects/compbio/lib/fssp-trained.regularizer \
-ins_jump_conf 1 \
-match_jump_conf 1 \
-del_jump_conf 1 \
-prior_library /projects/compbio/lib/recode3.20comp \
-binary_output 1 -a protein -aweight_method 1 -aweight_bits 0.5 -aweight_exponent 10
Reading parameter file /projects/compbio/lib/fssp-trained.regularizer
/projects/compbio/lib/fssp-trained.regularizer(1): Reading REGULARIZER: transitions from FSSP and pseudocounts for diverse weighted HSSP
SAM: modelfromalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:00
Reading alignment file /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30858/tmp.a2m (173 sequences, 530 columns) as A2M alignment.
@@@@ cp -f /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30858/tmp.mod T0334.t2k.w0.5.mod.tmp
@@@@ rm -rf /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30858 > /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/bin/i686/uniqueseq unique-tmp -alignfile T0334.t2k.a2m.gz -percent_id 0.90
SAM: /projects/compbio/bin/i686/uniqueseq v3.5 (July 15, 2005) compiled 05/31/06_11:54:11
Reading alignment file T0334.t2k.a2m.gz (306 sequences, 530 columns) as A2M alignment.
Writing sequence output to unique-tmp.a2m.
Dropping 113 (of 306) sequences with > 90.0% id in aligned columns
193 sequences left after dropping 113 of 306 sequences.
gzip -9f unique-tmp.a2m
mv unique-tmp.a2m.gz T0334.t2k-thin90.a2m.gz
echo ReadAlphabet /projects/compbio/lib/alphabet/str.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net >> tmp.script
echo ReadA2M T0334.t2k-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t2k.str2.seq >> tmp.script
echo PrintRDB T0334.t2k.str2.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 2 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/str.alphabet
# command:# Neural network set to t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t2k-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(-1, 1)
# requested less than 0 bits saved, using initial weights
# After reading T0334.t2k-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for str2
WARNING: BackgroundProbs for str2 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t2k.str2.seq
# command:WARNING: BackgroundProbs for str2 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t2k.str2.rdb
# command:rm tmp.script
/projects/compbio/bin/i686/makelogo T0334.t2k.w0.5-logo -i T0334.t2k.w0.5.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t2k w0.5" \
-logo_caption_f T0334.t2k.str2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_savings_output T0334.t2k.w0.5.saves
Reading parameter file T0334.t2k.w0.5.mod
T0334.t2k.w0.5.mod(1): Reading MODEL -- Model from alignment file /var/tmp/tmp-build-weighted-model-shaw.cse.ucsc.edu-30858/tmp.a2m
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t2k.w0.5-logo.eps' < /dev/null
Distilling T0334.t2k.w0.5-logo.eps (229,165 bytes)
3.3 seconds (0:03) 229,165 bytes PS => 25,981 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"SAM_t2k multiple alignment---sequence logo" \
T0334.t2k.w0.5-logo \
eps pdf >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/models.97/scripts2k/pick-key-residues \
-minbits 1.5 \
-minfreq 0.04 \
-first_residue 1 \
T0334.t2k.w0.5.key-residues
/projects/compbio/experiments/protein-predict/yeast/scripts/key-to-rasmol \
-set_name conserved_t2k \
< T0334.t2k.w0.5.key-residues > T0334.t2k.conserved.rasmol
ln -sf T0334.t2k.conserved.rasmol conserved_t2k
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for highlighting in rasmol" \
conserved_t2k >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
date
Mon Jun 19 12:34:14 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
date
Mon Jun 19 12:34:14 PDT 2006
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl end_section_summary_html \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_section_head_summary_html \
'\
Secondary Structure Prediction\
\
(Explanation of secondary-structure predictions) \
' \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/usr/bin/gmake -k AL_METHOD=t06 STRUCT_ALPH=str2 do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t06.str2.seq > T0334.t06.str2-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"str2 structure prediction" \
T0334.t06.str2 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t06.str2 coloring in rasmol" \
T0334.t06.str2-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
ln -sf T0334.t06.str2-color.rasmol str2
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t06.str2.rdb > T0334.t06.str2.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet STR2 T0334.t06.str2.rdb T0334.t06.str2.mod
/projects/compbio/bin/i686/makelogo T0334.t06.str2-logo -i T0334.t06.str2.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t06 str2" \
-logo_caption_f T0334.t06.str2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/str.colors
Reading parameter file T0334.t06.str2.mod
T0334.t06.str2.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t06.str2.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t06.str2-logo.eps' < /dev/null
Distilling T0334.t06.str2-logo.eps (241,460 bytes)
3.7 seconds (0:04) 241,460 bytes PS => 28,464 bytes PDF (12%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"str2---sequence logo" \
T0334.t06.str2-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t04 STRUCT_ALPH=str2 do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.str2
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t04.str2.seq > T0334.t04.str2-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"str2 structure prediction" \
T0334.t04.str2 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t04.str2 coloring in rasmol" \
T0334.t04.str2-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t04.str2.rdb > T0334.t04.str2.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet STR2 T0334.t04.str2.rdb T0334.t04.str2.mod
/projects/compbio/bin/i686/makelogo T0334.t04.str2-logo -i T0334.t04.str2.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t04 str2" \
-logo_caption_f T0334.t04.str2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/str.colors
Reading parameter file T0334.t04.str2.mod
T0334.t04.str2.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t04.str2.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t04.str2-logo.eps' < /dev/null
Distilling T0334.t04.str2-logo.eps (245,095 bytes)
3.6 seconds (0:04) 245,095 bytes PS => 29,455 bytes PDF (12%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"str2---sequence logo" \
T0334.t04.str2-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t2k STRUCT_ALPH=str2 do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.str2
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t2k.str2.seq > T0334.t2k.str2-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"str2 structure prediction" \
T0334.t2k.str2 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t2k.str2 coloring in rasmol" \
T0334.t2k.str2-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t2k.str2.rdb > T0334.t2k.str2.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet STR2 T0334.t2k.str2.rdb T0334.t2k.str2.mod
/projects/compbio/bin/i686/makelogo T0334.t2k.str2-logo -i T0334.t2k.str2.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t2k str2" \
-logo_caption_f T0334.t2k.str2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/str.colors
Reading parameter file T0334.t2k.str2.mod
T0334.t2k.str2.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t2k.str2.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t2k.str2-logo.eps' < /dev/null
Distilling T0334.t2k.str2-logo.eps (242,556 bytes)
3.7 seconds (0:04) 242,556 bytes PS => 29,030 bytes PDF (12%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"str2---sequence logo" \
T0334.t2k.str2-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake 1.small_divider;
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
date
Mon Jun 19 12:34:51 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t06 STRUCT_ALPH=stride-ebghtl do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.stride-ebghtl
echo ReadAlphabet /projects/compbio/lib/alphabet/DSSP.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net >> tmp.script
echo ReadA2M T0334.t06-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t06.stride-ebghtl.seq >> tmp.script
echo PrintRDB T0334.t06.stride-ebghtl.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 11 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/DSSP.alphabet
# command:# Neural network set to t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t06-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t06-thin90.a2m with 13964 sequences, total weight= 13964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.745659 bits.
# After reading T0334.t06-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for ebghtl-stride
WARNING: BackgroundProbs for EBGHTL not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t06.stride-ebghtl.seq
# command:WARNING: BackgroundProbs for EBGHTL not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t06.stride-ebghtl.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t06.stride-ebghtl.seq > T0334.t06.stride-ebghtl-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"stride-ebghtl structure prediction" \
T0334.t06.stride-ebghtl \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t06.stride-ebghtl coloring in rasmol" \
T0334.t06.stride-ebghtl-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
ln -sf T0334.t06.stride-ebghtl-color.rasmol stride
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t06.stride-ebghtl.rdb > T0334.t06.stride-ebghtl.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet EBGHTL T0334.t06.stride-ebghtl.rdb T0334.t06.stride-ebghtl.mod
/projects/compbio/bin/i686/makelogo T0334.t06.stride-ebghtl-logo -i T0334.t06.stride-ebghtl.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t06 stride-ebghtl" \
-logo_caption_f T0334.t06.stride-ebghtl.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/stride.colors
Reading parameter file T0334.t06.stride-ebghtl.mod
T0334.t06.stride-ebghtl.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t06.stride-ebghtl.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t06.stride-ebghtl-logo.eps' < /dev/null
Distilling T0334.t06.stride-ebghtl-logo.eps (228,455 bytes)
3.2 seconds (0:03) 228,455 bytes PS => 24,909 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"stride-ebghtl---sequence logo" \
T0334.t06.stride-ebghtl-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t04 STRUCT_ALPH=stride-ebghtl do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.stride-ebghtl
echo ReadAlphabet /projects/compbio/lib/alphabet/DSSP.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net >> tmp.script
echo ReadA2M T0334.t04-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t04.stride-ebghtl.seq >> tmp.script
echo PrintRDB T0334.t04.stride-ebghtl.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 11 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/DSSP.alphabet
# command:# Neural network set to t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t04-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t04-thin90.a2m with 1969 sequences, total weight= 1969 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.919369 bits.
# After reading T0334.t04-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for ebghtl-stride
WARNING: BackgroundProbs for EBGHTL not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t04.stride-ebghtl.seq
# command:WARNING: BackgroundProbs for EBGHTL not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t04.stride-ebghtl.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t04.stride-ebghtl.seq > T0334.t04.stride-ebghtl-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"stride-ebghtl structure prediction" \
T0334.t04.stride-ebghtl \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t04.stride-ebghtl coloring in rasmol" \
T0334.t04.stride-ebghtl-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t04.stride-ebghtl.rdb > T0334.t04.stride-ebghtl.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet EBGHTL T0334.t04.stride-ebghtl.rdb T0334.t04.stride-ebghtl.mod
/projects/compbio/bin/i686/makelogo T0334.t04.stride-ebghtl-logo -i T0334.t04.stride-ebghtl.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t04 stride-ebghtl" \
-logo_caption_f T0334.t04.stride-ebghtl.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/stride.colors
Reading parameter file T0334.t04.stride-ebghtl.mod
T0334.t04.stride-ebghtl.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t04.stride-ebghtl.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t04.stride-ebghtl-logo.eps' < /dev/null
Distilling T0334.t04.stride-ebghtl-logo.eps (225,567 bytes)
2.9 seconds (0:03) 225,567 bytes PS => 24,583 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"stride-ebghtl---sequence logo" \
T0334.t04.stride-ebghtl-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t2k STRUCT_ALPH=stride-ebghtl do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.stride-ebghtl
echo ReadAlphabet /projects/compbio/lib/alphabet/DSSP.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-stride-seeded.net >> tmp.script
echo ReadA2M T0334.t2k-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t2k.stride-ebghtl.seq >> tmp.script
echo PrintRDB T0334.t2k.stride-ebghtl.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 11 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/DSSP.alphabet
# command:# Neural network set to t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t2k-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(-1, 1)
# requested less than 0 bits saved, using initial weights
# After reading T0334.t2k-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for EBGHTL
WARNING: BackgroundProbs for EBGHTL not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t2k.stride-ebghtl.seq
# command:WARNING: BackgroundProbs for EBGHTL not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t2k.stride-ebghtl.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t2k.stride-ebghtl.seq > T0334.t2k.stride-ebghtl-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"stride-ebghtl structure prediction" \
T0334.t2k.stride-ebghtl \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t2k.stride-ebghtl coloring in rasmol" \
T0334.t2k.stride-ebghtl-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t2k.stride-ebghtl.rdb > T0334.t2k.stride-ebghtl.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet EBGHTL T0334.t2k.stride-ebghtl.rdb T0334.t2k.stride-ebghtl.mod
/projects/compbio/bin/i686/makelogo T0334.t2k.stride-ebghtl-logo -i T0334.t2k.stride-ebghtl.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t2k stride-ebghtl" \
-logo_caption_f T0334.t2k.stride-ebghtl.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/stride.colors
Reading parameter file T0334.t2k.stride-ebghtl.mod
T0334.t2k.stride-ebghtl.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t2k.stride-ebghtl.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t2k.stride-ebghtl-logo.eps' < /dev/null
Distilling T0334.t2k.stride-ebghtl-logo.eps (223,055 bytes)
3.5 seconds (0:04) 223,055 bytes PS => 24,234 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"stride-ebghtl---sequence logo" \
T0334.t2k.stride-ebghtl-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake 1.small_divider;
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
date
Mon Jun 19 12:36:31 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t06 STRUCT_ALPH=dssp-ebghstl do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.dssp-ebghstl
echo ReadAlphabet /projects/compbio/lib/alphabet/DSSP.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net >> tmp.script
echo ReadA2M T0334.t06-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t06.dssp-ebghstl.seq >> tmp.script
echo PrintRDB T0334.t06.dssp-ebghstl.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 11 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/DSSP.alphabet
# command:# Neural network set to t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t06-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t06-thin90.a2m with 13964 sequences, total weight= 13964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.745659 bits.
# After reading T0334.t06-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for ebghstl-dssp
WARNING: BackgroundProbs for EBGHSTL not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t06.dssp-ebghstl.seq
# command:WARNING: BackgroundProbs for EBGHSTL not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t06.dssp-ebghstl.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t06.dssp-ebghstl.seq > T0334.t06.dssp-ebghstl-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ebghstl structure prediction" \
T0334.t06.dssp-ebghstl \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t06.dssp-ebghstl coloring in rasmol" \
T0334.t06.dssp-ebghstl-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
ln -sf T0334.t06.dssp-ebghstl-color.rasmol dssp
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t06.dssp-ebghstl.rdb > T0334.t06.dssp-ebghstl.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet EBGHSTL T0334.t06.dssp-ebghstl.rdb T0334.t06.dssp-ebghstl.mod
/projects/compbio/bin/i686/makelogo T0334.t06.dssp-ebghstl-logo -i T0334.t06.dssp-ebghstl.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t06 dssp-ebghstl" \
-logo_caption_f T0334.t06.dssp-ebghstl.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/dssp.colors
Reading parameter file T0334.t06.dssp-ebghstl.mod
T0334.t06.dssp-ebghstl.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t06.dssp-ebghstl.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t06.dssp-ebghstl-logo.eps' < /dev/null
Distilling T0334.t06.dssp-ebghstl-logo.eps (236,189 bytes)
3.5 seconds (0:04) 236,189 bytes PS => 26,690 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ebghstl---sequence logo" \
T0334.t06.dssp-ebghstl-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t04 STRUCT_ALPH=dssp-ebghstl do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.dssp-ebghstl
echo ReadAlphabet /projects/compbio/lib/alphabet/DSSP.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net >> tmp.script
echo ReadA2M T0334.t04-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t04.dssp-ebghstl.seq >> tmp.script
echo PrintRDB T0334.t04.dssp-ebghstl.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 11 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/DSSP.alphabet
# command:# Neural network set to t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t04-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t04-thin90.a2m with 1969 sequences, total weight= 1969 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.919369 bits.
# After reading T0334.t04-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for ebghstl-dssp
WARNING: BackgroundProbs for EBGHSTL not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t04.dssp-ebghstl.seq
# command:WARNING: BackgroundProbs for EBGHSTL not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t04.dssp-ebghstl.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t04.dssp-ebghstl.seq > T0334.t04.dssp-ebghstl-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ebghstl structure prediction" \
T0334.t04.dssp-ebghstl \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t04.dssp-ebghstl coloring in rasmol" \
T0334.t04.dssp-ebghstl-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t04.dssp-ebghstl.rdb > T0334.t04.dssp-ebghstl.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet EBGHSTL T0334.t04.dssp-ebghstl.rdb T0334.t04.dssp-ebghstl.mod
/projects/compbio/bin/i686/makelogo T0334.t04.dssp-ebghstl-logo -i T0334.t04.dssp-ebghstl.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t04 dssp-ebghstl" \
-logo_caption_f T0334.t04.dssp-ebghstl.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/dssp.colors
Reading parameter file T0334.t04.dssp-ebghstl.mod
T0334.t04.dssp-ebghstl.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t04.dssp-ebghstl.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t04.dssp-ebghstl-logo.eps' < /dev/null
Distilling T0334.t04.dssp-ebghstl-logo.eps (234,380 bytes)
3.1 seconds (0:03) 234,380 bytes PS => 26,388 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ebghstl---sequence logo" \
T0334.t04.dssp-ebghstl-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t2k STRUCT_ALPH=dssp-ebghstl do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.dssp-ebghstl
echo ReadAlphabet /projects/compbio/lib/alphabet/DSSP.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net >> tmp.script
echo ReadA2M T0334.t2k-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t2k.dssp-ebghstl.seq >> tmp.script
echo PrintRDB T0334.t2k.dssp-ebghstl.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 11 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/DSSP.alphabet
# command:# Neural network set to t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t2k-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(-1, 1)
# requested less than 0 bits saved, using initial weights
# After reading T0334.t2k-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for EBGHTL
WARNING: BackgroundProbs for EBGHSTL not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t2k.dssp-ebghstl.seq
# command:WARNING: BackgroundProbs for EBGHSTL not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t2k.dssp-ebghstl.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t2k.dssp-ebghstl.seq > T0334.t2k.dssp-ebghstl-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ebghstl structure prediction" \
T0334.t2k.dssp-ebghstl \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t2k.dssp-ebghstl coloring in rasmol" \
T0334.t2k.dssp-ebghstl-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t2k.dssp-ebghstl.rdb > T0334.t2k.dssp-ebghstl.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet EBGHSTL T0334.t2k.dssp-ebghstl.rdb T0334.t2k.dssp-ebghstl.mod
/projects/compbio/bin/i686/makelogo T0334.t2k.dssp-ebghstl-logo -i T0334.t2k.dssp-ebghstl.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t2k dssp-ebghstl" \
-logo_caption_f T0334.t2k.dssp-ebghstl.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/dssp.colors
Reading parameter file T0334.t2k.dssp-ebghstl.mod
T0334.t2k.dssp-ebghstl.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t2k.dssp-ebghstl.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t2k.dssp-ebghstl-logo.eps' < /dev/null
Distilling T0334.t2k.dssp-ebghstl-logo.eps (228,064 bytes)
3.3 seconds (0:03) 228,064 bytes PS => 25,422 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ebghstl---sequence logo" \
T0334.t2k.dssp-ebghstl-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake 1.small_divider;
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
date
Mon Jun 19 12:38:12 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t06 STRUCT_ALPH=alpha do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.alpha
echo ReadAlphabet /projects/compbio/lib/alphabet/alpha.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t06-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net >> tmp.script
echo ReadA2M T0334.t06-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t06.alpha.seq >> tmp.script
echo PrintRDB T0334.t06.alpha.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 3 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/alpha.alphabet
# command:# Neural network set to t06-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t06-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t06-thin90.a2m with 13964 sequences, total weight= 13964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.745659 bits.
# After reading T0334.t06-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for alpha
WARNING: BackgroundProbs for ABCDEFGHIST not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t06.alpha.seq
# command:WARNING: BackgroundProbs for ABCDEFGHIST not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t06.alpha.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t06.alpha.seq > T0334.t06.alpha-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"alpha structure prediction" \
T0334.t06.alpha \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t06.alpha coloring in rasmol" \
T0334.t06.alpha-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
ln -sf T0334.t06.alpha-color.rasmol alpha
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t06.alpha.rdb > T0334.t06.alpha.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet ALPHA T0334.t06.alpha.rdb T0334.t06.alpha.mod
/projects/compbio/bin/i686/makelogo T0334.t06.alpha-logo -i T0334.t06.alpha.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t06 alpha" \
-logo_caption_f T0334.t06.alpha.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/alpha.colors
Reading parameter file T0334.t06.alpha.mod
T0334.t06.alpha.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t06.alpha.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t06.alpha-logo.eps' < /dev/null
Distilling T0334.t06.alpha-logo.eps (266,121 bytes)
4.7 seconds (0:05) 266,121 bytes PS => 29,711 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"alpha---sequence logo" \
T0334.t06.alpha-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t04 STRUCT_ALPH=alpha do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.alpha
echo ReadAlphabet /projects/compbio/lib/alphabet/alpha.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t04-2621-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net >> tmp.script
echo ReadA2M T0334.t04-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t04.alpha.seq >> tmp.script
echo PrintRDB T0334.t04.alpha.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 3 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/alpha.alphabet
# command:# Neural network set to t04-2621-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t04-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t04-thin90.a2m with 1969 sequences, total weight= 1969 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.919369 bits.
# After reading T0334.t04-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for alpha
WARNING: BackgroundProbs for ABCDEFGHIST not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t04.alpha.seq
# command:WARNING: BackgroundProbs for ABCDEFGHIST not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t04.alpha.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t04.alpha.seq > T0334.t04.alpha-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"alpha structure prediction" \
T0334.t04.alpha \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t04.alpha coloring in rasmol" \
T0334.t04.alpha-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t04.alpha.rdb > T0334.t04.alpha.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet ALPHA T0334.t04.alpha.rdb T0334.t04.alpha.mod
/projects/compbio/bin/i686/makelogo T0334.t04.alpha-logo -i T0334.t04.alpha.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t04 alpha" \
-logo_caption_f T0334.t04.alpha.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/alpha.colors
Reading parameter file T0334.t04.alpha.mod
T0334.t04.alpha.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t04.alpha.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t04.alpha-logo.eps' < /dev/null
Distilling T0334.t04.alpha-logo.eps (264,758 bytes)
3.8 seconds (0:04) 264,758 bytes PS => 30,392 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"alpha---sequence logo" \
T0334.t04.alpha-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t2k STRUCT_ALPH=alpha do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.alpha
echo ReadAlphabet /projects/compbio/lib/alphabet/alpha.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net >> tmp.script
echo ReadA2M T0334.t2k-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t2k.alpha.seq >> tmp.script
echo PrintRDB T0334.t2k.alpha.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 3 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/alpha.alphabet
# command:# Neural network set to t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t2k-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(-1, 1)
# requested less than 0 bits saved, using initial weights
# After reading T0334.t2k-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for alpha
WARNING: BackgroundProbs for ABCDEFGHIST not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t2k.alpha.seq
# command:WARNING: BackgroundProbs for ABCDEFGHIST not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t2k.alpha.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t2k.alpha.seq > T0334.t2k.alpha-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"alpha structure prediction" \
T0334.t2k.alpha \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t2k.alpha coloring in rasmol" \
T0334.t2k.alpha-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t2k.alpha.rdb > T0334.t2k.alpha.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet ALPHA T0334.t2k.alpha.rdb T0334.t2k.alpha.mod
/projects/compbio/bin/i686/makelogo T0334.t2k.alpha-logo -i T0334.t2k.alpha.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t2k alpha" \
-logo_caption_f T0334.t2k.alpha.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/alpha.colors
Reading parameter file T0334.t2k.alpha.mod
T0334.t2k.alpha.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t2k.alpha.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t2k.alpha-logo.eps' < /dev/null
Distilling T0334.t2k.alpha-logo.eps (260,618 bytes)
3.4 seconds (0:03) 260,618 bytes PS => 28,635 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"alpha---sequence logo" \
T0334.t2k.alpha-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake 1.small_divider;
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
date
Mon Jun 19 12:39:55 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t06 STRUCT_ALPH=bys do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.bys
echo ReadAlphabet /projects/compbio/lib/alphabet/bystroff.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net >> tmp.script
echo ReadA2M T0334.t06-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t06.bys.seq >> tmp.script
echo PrintRDB T0334.t06.bys.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 2 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/bystroff.alphabet
# command:# Neural network set to t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t06-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t06-thin90.a2m with 13964 sequences, total weight= 13964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.745659 bits.
# After reading T0334.t06-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for bys
WARNING: BackgroundProbs for Bystroff not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t06.bys.seq
# command:WARNING: BackgroundProbs for Bystroff not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t06.bys.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color bys \
< T0334.t06.bys.seq > T0334.t06.bys-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"bys structure prediction" \
T0334.t06.bys \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t06.bys coloring in rasmol" \
T0334.t06.bys-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
ln -sf T0334.t06.bys-color.rasmol bys
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t06.bys.rdb > T0334.t06.bys.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet BYS T0334.t06.bys.rdb T0334.t06.bys.mod
/projects/compbio/bin/i686/makelogo T0334.t06.bys-logo -i T0334.t06.bys.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t06 bys" \
-logo_caption_f T0334.t06.bys.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/bystroff.colors
Reading parameter file T0334.t06.bys.mod
T0334.t06.bys.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t06.bys.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t06.bys-logo.eps' < /dev/null
Distilling T0334.t06.bys-logo.eps (254,845 bytes)
3.4 seconds (0:03) 254,845 bytes PS => 28,448 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"bys---sequence logo" \
T0334.t06.bys-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t04 STRUCT_ALPH=bys do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.bys
echo ReadAlphabet /projects/compbio/lib/alphabet/bystroff.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net >> tmp.script
echo ReadA2M T0334.t04-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t04.bys.seq >> tmp.script
echo PrintRDB T0334.t04.bys.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 2 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/bystroff.alphabet
# command:# Neural network set to t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t04-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t04-thin90.a2m with 1969 sequences, total weight= 1969 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.919369 bits.
# After reading T0334.t04-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for bys
WARNING: BackgroundProbs for Bystroff not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t04.bys.seq
# command:WARNING: BackgroundProbs for Bystroff not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t04.bys.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color bys \
< T0334.t04.bys.seq > T0334.t04.bys-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"bys structure prediction" \
T0334.t04.bys \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t04.bys coloring in rasmol" \
T0334.t04.bys-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t04.bys.rdb > T0334.t04.bys.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet BYS T0334.t04.bys.rdb T0334.t04.bys.mod
/projects/compbio/bin/i686/makelogo T0334.t04.bys-logo -i T0334.t04.bys.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t04 bys" \
-logo_caption_f T0334.t04.bys.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/bystroff.colors
Reading parameter file T0334.t04.bys.mod
T0334.t04.bys.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t04.bys.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t04.bys-logo.eps' < /dev/null
Distilling T0334.t04.bys-logo.eps (255,057 bytes)
3.4 seconds (0:03) 255,057 bytes PS => 28,556 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"bys---sequence logo" \
T0334.t04.bys-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t2k STRUCT_ALPH=bys do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.bys
echo ReadAlphabet /projects/compbio/lib/alphabet/bystroff.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net >> tmp.script
echo ReadA2M T0334.t2k-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t2k.bys.seq >> tmp.script
echo PrintRDB T0334.t2k.bys.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 2 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/bystroff.alphabet
# command:# Neural network set to t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t2k-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t2k-thin90.a2m with 193 sequences, total weight= 193 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09626 bits.
# After reading T0334.t2k-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for bys
WARNING: BackgroundProbs for Bystroff not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t2k.bys.seq
# command:WARNING: BackgroundProbs for Bystroff not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t2k.bys.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color bys \
< T0334.t2k.bys.seq > T0334.t2k.bys-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"bys structure prediction" \
T0334.t2k.bys \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t2k.bys coloring in rasmol" \
T0334.t2k.bys-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t2k.bys.rdb > T0334.t2k.bys.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet BYS T0334.t2k.bys.rdb T0334.t2k.bys.mod
/projects/compbio/bin/i686/makelogo T0334.t2k.bys-logo -i T0334.t2k.bys.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t2k bys" \
-logo_caption_f T0334.t2k.bys.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/bystroff.colors
Reading parameter file T0334.t2k.bys.mod
T0334.t2k.bys.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t2k.bys.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t2k.bys-logo.eps' < /dev/null
Distilling T0334.t2k.bys-logo.eps (251,545 bytes)
3.4 seconds (0:03) 251,545 bytes PS => 27,745 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"bys---sequence logo" \
T0334.t2k.bys-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake 1.small_divider;
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
date
Mon Jun 19 12:41:36 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t06 STRUCT_ALPH=dssp-ehl2 do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.dssp-ehl2
/projects/compbio/experiments/protein-predict/casp7/scripts/RDBCombine T0334.t06.dssp-ebghstl.rdb T0334.t06.stride-ebghtl.rdb T0334.t06.str2.rdb T0334.t06.alpha.rdb -a 5370-1100-4902 > T0334.t06.dssp-ehl2.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/seq-from-rdb < T0334.t06.dssp-ehl2.rdb > T0334.t06.dssp-ehl2.seq
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t06.dssp-ehl2.seq > T0334.t06.dssp-ehl2-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ehl2 structure prediction" \
T0334.t06.dssp-ehl2 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t06.dssp-ehl2 coloring in rasmol" \
T0334.t06.dssp-ehl2-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
ln -sf T0334.t06.dssp-ehl2-color.rasmol ehl2
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t06.dssp-ehl2.rdb > T0334.t06.dssp-ehl2.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet EHL2 T0334.t06.dssp-ehl2.rdb T0334.t06.dssp-ehl2.mod
/projects/compbio/bin/i686/makelogo T0334.t06.dssp-ehl2-logo -i T0334.t06.dssp-ehl2.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t06 dssp-ehl2" \
-logo_caption_f T0334.t06.dssp-ehl2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/dssp.colors
Reading parameter file T0334.t06.dssp-ehl2.mod
T0334.t06.dssp-ehl2.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t06.dssp-ehl2.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t06.dssp-ehl2-logo.eps' < /dev/null
Distilling T0334.t06.dssp-ehl2-logo.eps (208,036 bytes)
2.8 seconds (0:03) 208,036 bytes PS => 20,302 bytes PDF (10%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ehl2---sequence logo" \
T0334.t06.dssp-ehl2-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t04 STRUCT_ALPH=dssp-ehl2 do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.dssp-ehl2
/projects/compbio/experiments/protein-predict/casp7/scripts/RDBCombine T0334.t04.dssp-ebghstl.rdb T0334.t04.stride-ebghtl.rdb T0334.t04.str2.rdb T0334.t04.alpha.rdb -a 5370-1100-4902 > T0334.t04.dssp-ehl2.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/seq-from-rdb < T0334.t04.dssp-ehl2.rdb > T0334.t04.dssp-ehl2.seq
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t04.dssp-ehl2.seq > T0334.t04.dssp-ehl2-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ehl2 structure prediction" \
T0334.t04.dssp-ehl2 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t04.dssp-ehl2 coloring in rasmol" \
T0334.t04.dssp-ehl2-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t04.dssp-ehl2.rdb > T0334.t04.dssp-ehl2.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet EHL2 T0334.t04.dssp-ehl2.rdb T0334.t04.dssp-ehl2.mod
/projects/compbio/bin/i686/makelogo T0334.t04.dssp-ehl2-logo -i T0334.t04.dssp-ehl2.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t04 dssp-ehl2" \
-logo_caption_f T0334.t04.dssp-ehl2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/dssp.colors
Reading parameter file T0334.t04.dssp-ehl2.mod
T0334.t04.dssp-ehl2.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t04.dssp-ehl2.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t04.dssp-ehl2-logo.eps' < /dev/null
Distilling T0334.t04.dssp-ehl2-logo.eps (208,676 bytes)
2.9 seconds (0:03) 208,676 bytes PS => 20,662 bytes PDF (10%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ehl2---sequence logo" \
T0334.t04.dssp-ehl2-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t2k STRUCT_ALPH=dssp-ehl2 do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.dssp-ehl2
/projects/compbio/experiments/protein-predict/casp7/scripts/RDBCombine T0334.t2k.dssp-ebghstl.rdb T0334.t2k.stride-ebghtl.rdb T0334.t2k.str2.rdb T0334.t2k.alpha.rdb -a 5370-1100-4902 > T0334.t2k.dssp-ehl2.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/seq-from-rdb < T0334.t2k.dssp-ehl2.rdb > T0334.t2k.dssp-ehl2.seq
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t2k.dssp-ehl2.seq > T0334.t2k.dssp-ehl2-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ehl2 structure prediction" \
T0334.t2k.dssp-ehl2 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t2k.dssp-ehl2 coloring in rasmol" \
T0334.t2k.dssp-ehl2-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t2k.dssp-ehl2.rdb > T0334.t2k.dssp-ehl2.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet EHL2 T0334.t2k.dssp-ehl2.rdb T0334.t2k.dssp-ehl2.mod
/projects/compbio/bin/i686/makelogo T0334.t2k.dssp-ehl2-logo -i T0334.t2k.dssp-ehl2.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t2k dssp-ehl2" \
-logo_caption_f T0334.t2k.dssp-ehl2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/dssp.colors
Reading parameter file T0334.t2k.dssp-ehl2.mod
T0334.t2k.dssp-ehl2.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t2k.dssp-ehl2.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t2k.dssp-ehl2-logo.eps' < /dev/null
Distilling T0334.t2k.dssp-ehl2-logo.eps (208,380 bytes)
3.1 seconds (0:03) 208,380 bytes PS => 20,379 bytes PDF (10%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ehl2---sequence logo" \
T0334.t2k.dssp-ehl2-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake 1.small_divider;
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
date
Mon Jun 19 12:42:13 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t06 STRUCT_ALPH=n_notor2 do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.n_notor2
echo ReadAlphabet /projects/compbio/lib/alphabet/hbonds.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net >> tmp.script
echo ReadA2M T0334.t06-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t06.n_notor2.seq >> tmp.script
echo PrintRDB T0334.t06.n_notor2.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 6 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/hbonds.alphabet
# command:# Neural network set to dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t06-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t06-thin90.a2m with 13964 sequences, total weight= 13964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.745659 bits.
# After reading T0334.t06-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for n_notor2
WARNING: BackgroundProbs for n_notor2 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t06.n_notor2.seq
# command:WARNING: BackgroundProbs for n_notor2 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t06.n_notor2.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t06.n_notor2.seq > T0334.t06.n_notor2-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"n_notor2 structure prediction" \
T0334.t06.n_notor2 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t06.n_notor2 coloring in rasmol" \
T0334.t06.n_notor2-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
ln -sf T0334.t06.n_notor2-color.rasmol n_notor
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t06.n_notor2.rdb > T0334.t06.n_notor2.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet N_NOTOR2 T0334.t06.n_notor2.rdb T0334.t06.n_notor2.mod
/projects/compbio/bin/i686/makelogo T0334.t06.n_notor2-logo -i T0334.t06.n_notor2.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t06 n_notor2" \
-logo_caption_f T0334.t06.n_notor2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/notor2.colors
Reading parameter file T0334.t06.n_notor2.mod
T0334.t06.n_notor2.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t06.n_notor2.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t06.n_notor2-logo.eps' < /dev/null
Distilling T0334.t06.n_notor2-logo.eps (233,485 bytes)
3.6 seconds (0:04) 233,485 bytes PS => 25,856 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"n_notor2---sequence logo" \
T0334.t06.n_notor2-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t04 STRUCT_ALPH=n_notor2 do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.n_notor2
echo ReadAlphabet /projects/compbio/lib/alphabet/hbonds.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net >> tmp.script
echo ReadA2M T0334.t04-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t04.n_notor2.seq >> tmp.script
echo PrintRDB T0334.t04.n_notor2.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 6 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/hbonds.alphabet
# command:# Neural network set to dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t04-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t04-thin90.a2m with 1969 sequences, total weight= 1969 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.919369 bits.
# After reading T0334.t04-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for n_notor2
WARNING: BackgroundProbs for n_notor2 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t04.n_notor2.seq
# command:WARNING: BackgroundProbs for n_notor2 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t04.n_notor2.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t04.n_notor2.seq > T0334.t04.n_notor2-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"n_notor2 structure prediction" \
T0334.t04.n_notor2 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t04.n_notor2 coloring in rasmol" \
T0334.t04.n_notor2-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t04.n_notor2.rdb > T0334.t04.n_notor2.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet N_NOTOR2 T0334.t04.n_notor2.rdb T0334.t04.n_notor2.mod
/projects/compbio/bin/i686/makelogo T0334.t04.n_notor2-logo -i T0334.t04.n_notor2.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t04 n_notor2" \
-logo_caption_f T0334.t04.n_notor2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/notor2.colors
Reading parameter file T0334.t04.n_notor2.mod
T0334.t04.n_notor2.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t04.n_notor2.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t04.n_notor2-logo.eps' < /dev/null
Distilling T0334.t04.n_notor2-logo.eps (242,005 bytes)
3.3 seconds (0:03) 242,005 bytes PS => 27,353 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"n_notor2---sequence logo" \
T0334.t04.n_notor2-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t2k STRUCT_ALPH=n_notor2 do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.n_notor2
echo ReadAlphabet /projects/compbio/lib/alphabet/hbonds.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net >> tmp.script
echo ReadA2M T0334.t2k-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t2k.n_notor2.seq >> tmp.script
echo PrintRDB T0334.t2k.n_notor2.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 6 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/hbonds.alphabet
# command:# Neural network set to dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t2k-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t2k-thin90.a2m with 193 sequences, total weight= 193 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09626 bits.
# After reading T0334.t2k-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for n_notor2
WARNING: BackgroundProbs for n_notor2 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t2k.n_notor2.seq
# command:WARNING: BackgroundProbs for n_notor2 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t2k.n_notor2.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t2k.n_notor2.seq > T0334.t2k.n_notor2-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"n_notor2 structure prediction" \
T0334.t2k.n_notor2 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t2k.n_notor2 coloring in rasmol" \
T0334.t2k.n_notor2-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t2k.n_notor2.rdb > T0334.t2k.n_notor2.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet N_NOTOR2 T0334.t2k.n_notor2.rdb T0334.t2k.n_notor2.mod
/projects/compbio/bin/i686/makelogo T0334.t2k.n_notor2-logo -i T0334.t2k.n_notor2.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t2k n_notor2" \
-logo_caption_f T0334.t2k.n_notor2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/notor2.colors
Reading parameter file T0334.t2k.n_notor2.mod
T0334.t2k.n_notor2.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t2k.n_notor2.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t2k.n_notor2-logo.eps' < /dev/null
Distilling T0334.t2k.n_notor2-logo.eps (241,468 bytes)
3.4 seconds (0:03) 241,468 bytes PS => 26,913 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"n_notor2---sequence logo" \
T0334.t2k.n_notor2-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake 1.small_divider;
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
date
Mon Jun 19 12:43:55 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t06 STRUCT_ALPH=o_notor2 do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.o_notor2
echo ReadAlphabet /projects/compbio/lib/alphabet/hbonds.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-o_notor2-from-empty.net >> tmp.script
echo ReadA2M T0334.t06-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t06.o_notor2.seq >> tmp.script
echo PrintRDB T0334.t06.o_notor2.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 6 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/hbonds.alphabet
# command:# Neural network set to dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-o_notor2-from-empty.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t06-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t06-thin90.a2m with 13964 sequences, total weight= 13964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.745659 bits.
# After reading T0334.t06-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for o_notor2
WARNING: BackgroundProbs for o_notor2 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t06.o_notor2.seq
# command:WARNING: BackgroundProbs for o_notor2 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t06.o_notor2.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t06.o_notor2.seq > T0334.t06.o_notor2-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"o_notor2 structure prediction" \
T0334.t06.o_notor2 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t06.o_notor2 coloring in rasmol" \
T0334.t06.o_notor2-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
ln -sf T0334.t06.o_notor2-color.rasmol o_notor
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t06.o_notor2.rdb > T0334.t06.o_notor2.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet O_NOTOR2 T0334.t06.o_notor2.rdb T0334.t06.o_notor2.mod
/projects/compbio/bin/i686/makelogo T0334.t06.o_notor2-logo -i T0334.t06.o_notor2.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t06 o_notor2" \
-logo_caption_f T0334.t06.o_notor2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/notor2.colors
Reading parameter file T0334.t06.o_notor2.mod
T0334.t06.o_notor2.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t06.o_notor2.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t06.o_notor2-logo.eps' < /dev/null
Distilling T0334.t06.o_notor2-logo.eps (237,803 bytes)
3.4 seconds (0:03) 237,803 bytes PS => 26,892 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"o_notor2---sequence logo" \
T0334.t06.o_notor2-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t04 STRUCT_ALPH=o_notor2 do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.o_notor2
echo ReadAlphabet /projects/compbio/lib/alphabet/hbonds.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-o_notor2-from-empty.net >> tmp.script
echo ReadA2M T0334.t04-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t04.o_notor2.seq >> tmp.script
echo PrintRDB T0334.t04.o_notor2.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 6 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/hbonds.alphabet
# command:# Neural network set to dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-o_notor2-from-empty.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t04-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t04-thin90.a2m with 1969 sequences, total weight= 1969 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.919369 bits.
# After reading T0334.t04-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for o_notor2
WARNING: BackgroundProbs for o_notor2 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t04.o_notor2.seq
# command:WARNING: BackgroundProbs for o_notor2 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t04.o_notor2.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t04.o_notor2.seq > T0334.t04.o_notor2-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"o_notor2 structure prediction" \
T0334.t04.o_notor2 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t04.o_notor2 coloring in rasmol" \
T0334.t04.o_notor2-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t04.o_notor2.rdb > T0334.t04.o_notor2.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet O_NOTOR2 T0334.t04.o_notor2.rdb T0334.t04.o_notor2.mod
/projects/compbio/bin/i686/makelogo T0334.t04.o_notor2-logo -i T0334.t04.o_notor2.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t04 o_notor2" \
-logo_caption_f T0334.t04.o_notor2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/notor2.colors
Reading parameter file T0334.t04.o_notor2.mod
T0334.t04.o_notor2.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t04.o_notor2.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t04.o_notor2-logo.eps' < /dev/null
Distilling T0334.t04.o_notor2-logo.eps (247,190 bytes)
3.9 seconds (0:04) 247,190 bytes PS => 28,737 bytes PDF (12%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"o_notor2---sequence logo" \
T0334.t04.o_notor2-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t2k STRUCT_ALPH=o_notor2 do_secondary do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.o_notor2
echo ReadAlphabet /projects/compbio/lib/alphabet/hbonds.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-o_notor2-from-empty.net >> tmp.script
echo ReadA2M T0334.t2k-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t2k.o_notor2.seq >> tmp.script
echo PrintRDB T0334.t2k.o_notor2.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 6 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/hbonds.alphabet
# command:# Neural network set to dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-o_notor2-from-empty.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t2k-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t2k-thin90.a2m with 193 sequences, total weight= 193 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09626 bits.
# After reading T0334.t2k-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for o_notor2
WARNING: BackgroundProbs for o_notor2 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t2k.o_notor2.seq
# command:WARNING: BackgroundProbs for o_notor2 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t2k.o_notor2.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.t2k.o_notor2.seq > T0334.t2k.o_notor2-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"o_notor2 structure prediction" \
T0334.t2k.o_notor2 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t2k.o_notor2 coloring in rasmol" \
T0334.t2k.o_notor2-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.t2k.o_notor2.rdb > T0334.t2k.o_notor2.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet O_NOTOR2 T0334.t2k.o_notor2.rdb T0334.t2k.o_notor2.mod
/projects/compbio/bin/i686/makelogo T0334.t2k.o_notor2-logo -i T0334.t2k.o_notor2.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t2k o_notor2" \
-logo_caption_f T0334.t2k.o_notor2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/notor2.colors
Reading parameter file T0334.t2k.o_notor2.mod
T0334.t2k.o_notor2.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t2k.o_notor2.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t2k.o_notor2-logo.eps' < /dev/null
Distilling T0334.t2k.o_notor2-logo.eps (241,939 bytes)
3.4 seconds (0:03) 241,939 bytes PS => 27,674 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"o_notor2---sequence logo" \
T0334.t2k.o_notor2-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake 1.small_divider;
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
date
Mon Jun 19 12:45:38 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k MERGE_SECONDARY=1 STRUCT_ALPH=dssp-ehl2 \
do_secondary do_secondary_logo mail_secondary 1.small_divider
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.dssp-ehl2
/projects/compbio/experiments/protein-predict/casp7/scripts/RDBCombine T0334.t06.dssp-ebghstl.rdb T0334.t06.stride-ebghtl.rdb T0334.t06.str2.rdb T0334.t06.alpha.rdb T0334.t04.dssp-ebghstl.rdb T0334.t04.stride-ebghtl.rdb T0334.t04.str2.rdb T0334.t04.alpha.rdb T0334.t2k.dssp-ebghstl.rdb T0334.t2k.stride-ebghtl.rdb T0334.t2k.str2.rdb T0334.t2k.alpha.rdb -a 5370-1100-4902 > T0334.dssp-ehl2.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/seq-from-rdb < T0334.dssp-ehl2.rdb > T0334.dssp-ehl2.seq
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color 2ry \
< T0334.dssp-ehl2.seq > T0334.dssp-ehl2-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ehl2 structure prediction" \
T0334.dssp-ehl2 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.dssp-ehl2 coloring in rasmol" \
T0334.dssp-ehl2-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
ln -sf T0334.dssp-ehl2-color.rasmol ehl2
/projects/compbio/experiments/protein-predict/casp7/scripts/constraints-from-rdb -start 1 < T0334.dssp-ehl2.rdb > T0334.dssp-ehl2.constraints
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet EHL2 T0334.dssp-ehl2.rdb T0334.dssp-ehl2.mod
/projects/compbio/bin/i686/makelogo T0334.dssp-ehl2-logo -i T0334.dssp-ehl2.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334 dssp-ehl2" \
-logo_caption_f T0334.dssp-ehl2.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/dssp.colors
Reading parameter file T0334.dssp-ehl2.mod
T0334.dssp-ehl2.mod(3): Reading MODEL -- Model from 2nd structure file T0334.dssp-ehl2.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.dssp-ehl2-logo.eps' < /dev/null
Distilling T0334.dssp-ehl2-logo.eps (208,376 bytes)
2.9 seconds (0:03) 208,376 bytes PS => 20,374 bytes PDF (10%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"dssp-ehl2---sequence logo" \
T0334.dssp-ehl2-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
echo no email address to mail T0334.dssp-ehl2 to.
no email address to mail T0334.dssp-ehl2 to.
date
Mon Jun 19 12:45:50 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t06 STRUCT_ALPH=CB_burial_14_7 STRUCT_ALPH=CB_burial_14_7 do_burial_or_secondary T0334.t06.CB_burial_14_7.mod do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.CB_burial_14_7
echo ReadAlphabet /projects/compbio/lib/alphabet/burial.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t06-IDGaaH13-3-13-7-13-9-13-11-CB-burial-14-7-seeded.net >> tmp.script
echo ReadA2M T0334.t06-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t06.CB_burial_14_7.seq >> tmp.script
echo PrintRDB T0334.t06.CB_burial_14_7.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 28 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/burial.alphabet
# command:# Neural network set to t06-IDGaaH13-3-13-7-13-9-13-11-CB-burial-14-7-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t06-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t06-thin90.a2m with 13964 sequences, total weight= 13964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.745659 bits.
# After reading T0334.t06-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for CB-burial-14-7
WARNING: BackgroundProbs for CB_burial_14_7 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t06.CB_burial_14_7.seq
# command:WARNING: BackgroundProbs for CB_burial_14_7 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t06.CB_burial_14_7.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color burial7 \
< T0334.t06.CB_burial_14_7.seq > T0334.t06.CB_burial_14_7-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"CB_burial_14_7 structure prediction" \
T0334.t06.CB_burial_14_7 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t06.CB_burial_14_7 coloring in rasmol" \
T0334.t06.CB_burial_14_7-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
ln -sf T0334.t06.CB_burial_14_7-color.rasmol burial
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet CB_BURIAL_14_7 T0334.t06.CB_burial_14_7.rdb T0334.t06.CB_burial_14_7.mod
/projects/compbio/bin/i686/makelogo T0334.t06.CB_burial_14_7-logo -i T0334.t06.CB_burial_14_7.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t06 CB_burial_14_7" \
-logo_caption_f T0334.t06.CB_burial_14_7.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/burial7.colors
Reading parameter file T0334.t06.CB_burial_14_7.mod
T0334.t06.CB_burial_14_7.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t06.CB_burial_14_7.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t06.CB_burial_14_7-logo.eps' < /dev/null
Distilling T0334.t06.CB_burial_14_7-logo.eps (284,111 bytes)
3.8 seconds (0:04) 284,111 bytes PS => 30,939 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"CB_burial_14_7---sequence logo" \
T0334.t06.CB_burial_14_7-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t04 STRUCT_ALPH=CB_burial_14_7 STRUCT_ALPH=CB_burial_14_7 do_burial_or_secondary T0334.t04.CB_burial_14_7.mod do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.CB_burial_14_7
echo ReadAlphabet /projects/compbio/lib/alphabet/burial.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t04-2621-IDGaaH13-3-13-7-13-9-13-11-CB-burial-14-7-seeded.net >> tmp.script
echo ReadA2M T0334.t04-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t04.CB_burial_14_7.seq >> tmp.script
echo PrintRDB T0334.t04.CB_burial_14_7.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 28 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/burial.alphabet
# command:# Neural network set to t04-2621-IDGaaH13-3-13-7-13-9-13-11-CB-burial-14-7-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t04-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t04-thin90.a2m with 1969 sequences, total weight= 1969 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.919369 bits.
# After reading T0334.t04-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for CB-burial-14-7
WARNING: BackgroundProbs for CB_burial_14_7 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t04.CB_burial_14_7.seq
# command:WARNING: BackgroundProbs for CB_burial_14_7 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t04.CB_burial_14_7.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color burial7 \
< T0334.t04.CB_burial_14_7.seq > T0334.t04.CB_burial_14_7-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"CB_burial_14_7 structure prediction" \
T0334.t04.CB_burial_14_7 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t04.CB_burial_14_7 coloring in rasmol" \
T0334.t04.CB_burial_14_7-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet CB_BURIAL_14_7 T0334.t04.CB_burial_14_7.rdb T0334.t04.CB_burial_14_7.mod
/projects/compbio/bin/i686/makelogo T0334.t04.CB_burial_14_7-logo -i T0334.t04.CB_burial_14_7.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t04 CB_burial_14_7" \
-logo_caption_f T0334.t04.CB_burial_14_7.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/burial7.colors
Reading parameter file T0334.t04.CB_burial_14_7.mod
T0334.t04.CB_burial_14_7.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t04.CB_burial_14_7.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t04.CB_burial_14_7-logo.eps' < /dev/null
Distilling T0334.t04.CB_burial_14_7-logo.eps (294,457 bytes)
3.8 seconds (0:04) 294,457 bytes PS => 33,081 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"CB_burial_14_7---sequence logo" \
T0334.t04.CB_burial_14_7-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t2k STRUCT_ALPH=CB_burial_14_7 STRUCT_ALPH=CB_burial_14_7 do_burial_or_secondary T0334.t2k.CB_burial_14_7.mod do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.CB_burial_14_7
echo ReadAlphabet /projects/compbio/lib/alphabet/burial.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t2k-5631-IDaaHr-5-15-7-15-9-15-13-CB-burial-14-7-from-empty.net >> tmp.script
echo ReadA2M T0334.t2k-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t2k.CB_burial_14_7.seq >> tmp.script
echo PrintRDB T0334.t2k.CB_burial_14_7.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 28 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/burial.alphabet
# command:# Neural network set to t2k-5631-IDaaHr-5-15-7-15-9-15-13-CB-burial-14-7-from-empty.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t2k-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(-1, 1)
# requested less than 0 bits saved, using initial weights
# After reading T0334.t2k-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for CB-burial
WARNING: BackgroundProbs for CB_burial_14_7 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t2k.CB_burial_14_7.seq
# command:WARNING: BackgroundProbs for CB_burial_14_7 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t2k.CB_burial_14_7.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color burial7 \
< T0334.t2k.CB_burial_14_7.seq > T0334.t2k.CB_burial_14_7-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"CB_burial_14_7 structure prediction" \
T0334.t2k.CB_burial_14_7 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t2k.CB_burial_14_7 coloring in rasmol" \
T0334.t2k.CB_burial_14_7-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet CB_BURIAL_14_7 T0334.t2k.CB_burial_14_7.rdb T0334.t2k.CB_burial_14_7.mod
/projects/compbio/bin/i686/makelogo T0334.t2k.CB_burial_14_7-logo -i T0334.t2k.CB_burial_14_7.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t2k CB_burial_14_7" \
-logo_caption_f T0334.t2k.CB_burial_14_7.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/burial7.colors
Reading parameter file T0334.t2k.CB_burial_14_7.mod
T0334.t2k.CB_burial_14_7.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t2k.CB_burial_14_7.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t2k.CB_burial_14_7-logo.eps' < /dev/null
Distilling T0334.t2k.CB_burial_14_7-logo.eps (286,867 bytes)
4.0 seconds (0:04) 286,867 bytes PS => 31,795 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"CB_burial_14_7---sequence logo" \
T0334.t2k.CB_burial_14_7-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake 1.small_divider
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
date
Mon Jun 19 12:47:33 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t06 STRUCT_ALPH=near-backbone-11 STRUCT_ALPH=near-backbone-11 do_burial_or_secondary T0334.t06.near-backbone-11.mod do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.near-backbone-11
echo ReadAlphabet /projects/compbio/lib/alphabet/two-spot-burial.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t06-IDGaaH13-3-13-7-13-9-13-11-near-backbone-11-seeded.net >> tmp.script
echo ReadA2M T0334.t06-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t06.near-backbone-11.seq >> tmp.script
echo PrintRDB T0334.t06.near-backbone-11.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 5 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/two-spot-burial.alphabet
# command:# Neural network set to t06-IDGaaH13-3-13-7-13-9-13-11-near-backbone-11-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t06-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t06-thin90.a2m with 13964 sequences, total weight= 13964 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.745659 bits.
# After reading T0334.t06-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for near-backbone-11
WARNING: BackgroundProbs for near-backbone-11 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t06.near-backbone-11.seq
# command:WARNING: BackgroundProbs for near-backbone-11 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t06.near-backbone-11.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color burial11 \
< T0334.t06.near-backbone-11.seq > T0334.t06.near-backbone-11-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"near-backbone-11 structure prediction" \
T0334.t06.near-backbone-11 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t06.near-backbone-11 coloring in rasmol" \
T0334.t06.near-backbone-11-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
ln -sf T0334.t06.near-backbone-11-color.rasmol near
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet NEAR-BACKBONE-11 T0334.t06.near-backbone-11.rdb T0334.t06.near-backbone-11.mod
/projects/compbio/bin/i686/makelogo T0334.t06.near-backbone-11-logo -i T0334.t06.near-backbone-11.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t06 near-backbone-11" \
-logo_caption_f T0334.t06.near-backbone-11.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/burial11.colors
Reading parameter file T0334.t06.near-backbone-11.mod
T0334.t06.near-backbone-11.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t06.near-backbone-11.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t06.near-backbone-11-logo.eps' < /dev/null
Distilling T0334.t06.near-backbone-11-logo.eps (308,546 bytes)
3.9 seconds (0:04) 308,546 bytes PS => 34,532 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"near-backbone-11---sequence logo" \
T0334.t06.near-backbone-11-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t04 STRUCT_ALPH=near-backbone-11 STRUCT_ALPH=near-backbone-11 do_burial_or_secondary T0334.t04.near-backbone-11.mod do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.near-backbone-11
echo ReadAlphabet /projects/compbio/lib/alphabet/two-spot-burial.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t04-2621-IDGaaH13-3-13-7-13-9-13-11-near-backbone-11-seeded.net >> tmp.script
echo ReadA2M T0334.t04-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t04.near-backbone-11.seq >> tmp.script
echo PrintRDB T0334.t04.near-backbone-11.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 5 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/two-spot-burial.alphabet
# command:# Neural network set to t04-2621-IDGaaH13-3-13-7-13-9-13-11-near-backbone-11-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t04-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t04-thin90.a2m with 1969 sequences, total weight= 1969 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 0.919369 bits.
# After reading T0334.t04-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for near-backbone-11
WARNING: BackgroundProbs for near-backbone-11 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t04.near-backbone-11.seq
# command:WARNING: BackgroundProbs for near-backbone-11 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t04.near-backbone-11.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color burial11 \
< T0334.t04.near-backbone-11.seq > T0334.t04.near-backbone-11-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"near-backbone-11 structure prediction" \
T0334.t04.near-backbone-11 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t04.near-backbone-11 coloring in rasmol" \
T0334.t04.near-backbone-11-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet NEAR-BACKBONE-11 T0334.t04.near-backbone-11.rdb T0334.t04.near-backbone-11.mod
/projects/compbio/bin/i686/makelogo T0334.t04.near-backbone-11-logo -i T0334.t04.near-backbone-11.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t04 near-backbone-11" \
-logo_caption_f T0334.t04.near-backbone-11.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/burial11.colors
Reading parameter file T0334.t04.near-backbone-11.mod
T0334.t04.near-backbone-11.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t04.near-backbone-11.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t04.near-backbone-11-logo.eps' < /dev/null
Distilling T0334.t04.near-backbone-11-logo.eps (313,851 bytes)
4.3 seconds (0:04) 313,851 bytes PS => 36,569 bytes PDF (12%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"near-backbone-11---sequence logo" \
T0334.t04.near-backbone-11-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k AL_METHOD=t2k STRUCT_ALPH=near-backbone-11 STRUCT_ALPH=near-backbone-11 do_burial_or_secondary T0334.t2k.near-backbone-11.mod do_secondary_logo
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.near-backbone-11
echo ReadAlphabet /projects/compbio/lib/alphabet/two-spot-burial.alphabet > tmp.script
echo ReadNeuralNet /projects/compbio/experiments/protein-predict/casp7/networks/t04-2621-IDGaaH13-3-13-7-13-9-13-11-near-backbone-11-seeded.net >> tmp.script
echo ReadA2M T0334.t2k-thin90.a2m.gz >> tmp.script
echo PrintPredictionFasta T0334.t2k.near-backbone-11.seq >> tmp.script
echo PrintRDB T0334.t2k.near-backbone-11.rdb >> tmp.script
/projects/compbio/programs/predict-2nd/bin/i686/opt/predict-2nd < tmp.script
# command:# Read 5 alphabets and 0 BackgroundProbs from /projects/compbio/lib/alphabet/two-spot-burial.alphabet
# command:# Neural network set to t04-2621-IDGaaH13-3-13-7-13-9-13-11-near-backbone-11-seeded.net
# command:# Warning: deprecated command ReadA2m. Use ReadForPredict.
# Reading A2M format from T0334.t2k-thin90.a2m.gz
# Using SequenceWeight HenikoffWeight(1.3, 1)
# Using regularizer /projects/compbio/lib/recode3.20comp for sequence weight regularizer.
# T0334.t2k-thin90.a2m with 193 sequences, total weight= 193 avg weight= 1 clipped 46 iterations
# AdjustWeights couldn't save exactly 1.3 bits/position, saving 1.09626 bits.
# After reading T0334.t2k-thin90.a2m.gz, have 530 columns in 1 chains
# command:# Initializing Gain for near-backbone-11
WARNING: BackgroundProbs for near-backbone-11 not read in before initializing network.
# Initializing Gain for third_layer
# Initializing Gain for second_layer
# Initializing Gain for FirstLayer
# Network initialization done
# Printing prediction in FASTA format to T0334.t2k.near-backbone-11.seq
# command:WARNING: BackgroundProbs for near-backbone-11 not read in before initializing network.
# Network initialization done
# Printing prediction to T0334.t2k.near-backbone-11.rdb
# command:rm tmp.script
/projects/compbio/experiments/protein-predict/yeast/scripts/rasmol_color_from_burial \
-pdb T0334.blank.pdb.gz \
-start_col 1 \
-color burial11 \
< T0334.t2k.near-backbone-11.seq > T0334.t2k.near-backbone-11-color.rasmol
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"near-backbone-11 structure prediction" \
T0334.t2k.near-backbone-11 \
rdb seq \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"Script for T0334.t2k.near-backbone-11 coloring in rasmol" \
T0334.t2k.near-backbone-11-color.rasmol >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/models.97/scripts/2nd-rdb-to-sam-model -alphabet NEAR-BACKBONE-11 T0334.t2k.near-backbone-11.rdb T0334.t2k.near-backbone-11.mod
/projects/compbio/bin/i686/makelogo T0334.t2k.near-backbone-11-logo -i T0334.t2k.near-backbone-11.mod \
-logo_start_num 1 \
-logo_rel_entropy 1 \
-logo_bars_per_line 50 -logo_title "T0334.t2k near-backbone-11" \
-logo_caption_f T0334.t2k.near-backbone-11.seq \
-logo_under_file T0334.upper-only.a2m \
-logo_color_file /projects/compbio/lib/burial11.colors
Reading parameter file T0334.t2k.near-backbone-11.mod
T0334.t2k.near-backbone-11.mod(3): Reading MODEL -- Model from 2nd structure file T0334.t2k.near-backbone-11.rdb
SAM: /projects/compbio/bin/i686/makelogo v3.5 (July 15, 2005) compiled 05/31/06_11:54:17
% Sequence-model (global) (SW = 0)
ssh apache 'cd /projects/compbio/experiments/protein-predict/casp7/T0334; distill T0334.t2k.near-backbone-11-logo.eps' < /dev/null
Distilling T0334.t2k.near-backbone-11-logo.eps (309,523 bytes)
4.1 seconds (0:04) 309,523 bytes PS => 35,462 bytes PDF (11%)
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_multiple_formats \
"near-backbone-11---sequence logo" \
T0334.t2k.near-backbone-11-logo \
eps pdf \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake 1.small_divider
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
date
Mon Jun 19 12:49:16 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
date
Mon Jun 19 12:49:16 PDT 2006
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl end_section_summary_html \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_section_head_summary_html \
"Target model scores" >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/usr/bin/gmake -k AL_METHOD=t06 1track_target_mod_scores_t06; /usr/bin/gmake -k AL_METHOD=t04 1track_target_mod_scores_t04; /usr/bin/gmake -k AL_METHOD=t2k 1track_target_mod_scores_t2k;
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
/projects/compbio/bin/i686/hmmscore T0334.t06.w0.5 \
-verbose 0 \
-calibrate 1 \
-i T0334.t06.w0.5.mod \
-db /projects/compbio/experiments/models.97/indexes/t06.x-seqs \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 0
Creating calibrated model library T0334.t06.w0.5.mlib (calibrate = 1).
Calibrating to sequence database.
Found 8041 sequences in 1 file; selected 8041 sequences
Model T0334.t06.w0.5.mod calibrated to tau=0.8484 and lambda=1.3115
rm -f T0334.t06.w0.5.dist
/projects/compbio/bin/i686/hmmscore w0.5foo \
-verbose 0 \
-modellibrary T0334.t06.w0.5.mlib \
-db /projects/compbio/data/pdb/dunbrack-pdbaa \
-select_score 4 -Emax 90.0
mv -f w0.5foo.1.T0334.t06.w0.5.mod.dist T0334.t06.w0.5.dist
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz T0334.t06-w0.5 < T0334.t06.w0.5.dist > T0334.t06-w0.5-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.w0.5-scores < T0334.t06-w0.5-scores.rdb > T0334.t06-w0.5-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid single-track target model scores of PDB" \
T0334.t06-w0.5-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.str2
/projects/compbio/bin/i686/hmmscore T0334.t04.w0.5 \
-verbose 0 \
-calibrate 1 \
-i T0334.t04.w0.5.mod \
-db /projects/compbio/experiments/models.97/indexes/t04.x-seqs \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 0
Creating calibrated model library T0334.t04.w0.5.mlib (calibrate = 1).
Calibrating to sequence database.
Found 10897 sequences in 1 file; selected 10897 sequences
Model T0334.t04.w0.5.mod calibrated to tau=0.9291 and lambda=1.0045
rm -f T0334.t04.w0.5.dist
/projects/compbio/bin/i686/hmmscore w0.5foo \
-verbose 0 \
-modellibrary T0334.t04.w0.5.mlib \
-db /projects/compbio/data/pdb/dunbrack-pdbaa \
-select_score 4 -Emax 90.0
mv -f w0.5foo.1.T0334.t04.w0.5.mod.dist T0334.t04.w0.5.dist
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz T0334.t04-w0.5 < T0334.t04.w0.5.dist > T0334.t04-w0.5-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t04.w0.5-scores < T0334.t04-w0.5-scores.rdb > T0334.t04-w0.5-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid single-track target model scores of PDB" \
T0334.t04-w0.5-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.str2
/projects/compbio/bin/i686/hmmscore T0334.t2k.w0.5 \
-verbose 0 \
-calibrate 1 \
-i T0334.t2k.w0.5.mod \
-db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 0
Creating calibrated model library T0334.t2k.w0.5.mlib (calibrate = 1).
Calibrating to sequence database.
Found 14906 sequences in 1 file; selected 14906 sequences
Model T0334.t2k.w0.5.mod calibrated to tau=0.7405 and lambda=2.2918
rm -f T0334.t2k.w0.5.dist
/projects/compbio/bin/i686/hmmscore w0.5foo \
-verbose 0 \
-modellibrary T0334.t2k.w0.5.mlib \
-db /projects/compbio/data/pdb/dunbrack-pdbaa \
-select_score 4 -Emax 90.0
mv -f w0.5foo.1.T0334.t2k.w0.5.mod.dist T0334.t2k.w0.5.dist
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz T0334.t2k-w0.5 < T0334.t2k.w0.5.dist > T0334.t2k-w0.5-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t2k.w0.5-scores < T0334.t2k-w0.5-scores.rdb > T0334.t2k-w0.5-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid single-track target model scores of PDB" \
T0334.t2k-w0.5-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
date
Mon Jun 19 13:19:43 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/usr/bin/gmake -k STRUCT_ALPH=str2 AL_METHOD=t06 T0334.t06-100-30-str2.mlib T0334.t06-100-30-str2.dist t06-100-30-str2-scores; /usr/bin/gmake -k STRUCT_ALPH=stride-ebghtl AL_METHOD=t06 T0334.t06-100-30-stride-ebghtl.mlib T0334.t06-100-30-stride-ebghtl.dist t06-100-30-stride-ebghtl-scores; /usr/bin/gmake -k STRUCT_ALPH=dssp-ebghstl AL_METHOD=t06 T0334.t06-100-30-dssp-ebghstl.mlib T0334.t06-100-30-dssp-ebghstl.dist t06-100-30-dssp-ebghstl-scores; /usr/bin/gmake -k STRUCT_ALPH=alpha AL_METHOD=t06 T0334.t06-100-30-alpha.mlib T0334.t06-100-30-alpha.dist t06-100-30-alpha-scores; /usr/bin/gmake -k STRUCT_ALPH=bys AL_METHOD=t06 T0334.t06-100-30-bys.mlib T0334.t06-100-30-bys.dist t06-100-30-bys-scores; /usr/bin/gmake -k STRUCT_ALPH=dssp-ehl2 AL_METHOD=t06 T0334.t06-100-30-dssp-ehl2.mlib T0334.t06-100-30-dssp-ehl2.dist t06-100-30-dssp-ehl2-scores; /usr/bin/gmake -k STRUCT_ALPH=n_notor2 AL_METHOD=t06 T0334.t06-100-30-n_notor2.mlib T0334.t06-100-30-n_notor2.dist t06-100-30-n_notor2-scores; /usr/bin/gmake -k STRUCT_ALPH=o_notor2 AL_METHOD=t06 T0334.t06-100-30-o_notor2.mlib T0334.t06-100-30-o_notor2.dist t06-100-30-o_notor2-scores; /usr/bin/gmake -k STRUCT_ALPH=CB_burial_14_7 AL_METHOD=t06 T0334.t06-100-30-CB_burial_14_7.mlib T0334.t06-100-30-CB_burial_14_7.dist t06-100-30-CB_burial_14_7-scores; /usr/bin/gmake -k STRUCT_ALPH=near-backbone-11 AL_METHOD=t06 T0334.t06-100-30-near-backbone-11.mlib T0334.t06-100-30-near-backbone-11.dist t06-100-30-near-backbone-11-scores;
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
/projects/compbio/bin/i686/hmmscore T0334.t06-100-30-str2 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,STR2 \
-trackmod T0334.t06.w0.5.mod,T0334.t06.str2.mod \
-db /projects/compbio/experiments/models.97/indexes/t06.x-seqs,/projects/compbio/experiments/models.97/indexes/t06.str2s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t06-100-30-str2.mlib (calibrate = 1).
Calibrating to sequence database.
Found 8041 sequences in 1 file; selected 8041 sequences
Model T0334.t06-100-30-str2 calibrated to tau=0.8639 and lambda=0.9305
gmake[1]: Nothing to be done for `T0334.t06-100-30-str2.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t06-100-30-str2-scores < T0334.t06-100-30-str2.dist > T0334.t06-100-30-str2-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.100-30-str2-scores < T0334.t06-100-30-str2-scores.rdb > T0334.t06-100-30-str2-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-str2 multi-track target model scores" \
T0334.t06-100-30-str2-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.stride-ebghtl
/projects/compbio/bin/i686/hmmscore T0334.t06-100-30-stride-ebghtl \
-verbose 0 \
-calibrate 1 \
-alphabet protein,EBGHTL \
-trackmod T0334.t06.w0.5.mod,T0334.t06.stride-ebghtl.mod \
-db /projects/compbio/experiments/models.97/indexes/t06.x-seqs,/projects/compbio/experiments/models.97/indexes/t06.2ds \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t06-100-30-stride-ebghtl.mlib (calibrate = 1).
Calibrating to sequence database.
Found 8041 sequences in 1 file; selected 8041 sequences
Model T0334.t06-100-30-stride-ebghtl calibrated to tau=0.9114 and lambda=0.7562
gmake[1]: Nothing to be done for `T0334.t06-100-30-stride-ebghtl.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t06-100-30-stride-ebghtl-scores < T0334.t06-100-30-stride-ebghtl.dist > T0334.t06-100-30-stride-ebghtl-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.100-30-stride-ebghtl-scores < T0334.t06-100-30-stride-ebghtl-scores.rdb > T0334.t06-100-30-stride-ebghtl-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-stride-ebghtl multi-track target model scores" \
T0334.t06-100-30-stride-ebghtl-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.dssp-ebghstl
/projects/compbio/bin/i686/hmmscore T0334.t06-100-30-dssp-ebghstl \
-verbose 0 \
-calibrate 1 \
-alphabet protein,EBGHSTL \
-trackmod T0334.t06.w0.5.mod,T0334.t06.dssp-ebghstl.mod \
-db /projects/compbio/experiments/models.97/indexes/t06.x-seqs,/projects/compbio/experiments/models.97/indexes/t06.dssps \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t06-100-30-dssp-ebghstl.mlib (calibrate = 1).
Calibrating to sequence database.
Found 8041 sequences in 1 file; selected 8041 sequences
Model T0334.t06-100-30-dssp-ebghstl calibrated to tau=0.8412 and lambda=0.9185
gmake[1]: Nothing to be done for `T0334.t06-100-30-dssp-ebghstl.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t06-100-30-dssp-ebghstl-scores < T0334.t06-100-30-dssp-ebghstl.dist > T0334.t06-100-30-dssp-ebghstl-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.100-30-dssp-ebghstl-scores < T0334.t06-100-30-dssp-ebghstl-scores.rdb > T0334.t06-100-30-dssp-ebghstl-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-dssp-ebghstl multi-track target model scores" \
T0334.t06-100-30-dssp-ebghstl-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.alpha
/projects/compbio/bin/i686/hmmscore T0334.t06-100-30-alpha \
-verbose 0 \
-calibrate 1 \
-alphabet protein,ALPHA \
-trackmod T0334.t06.w0.5.mod,T0334.t06.alpha.mod \
-db /projects/compbio/experiments/models.97/indexes/t06.x-seqs,/projects/compbio/experiments/models.97/indexes/t06.alphas \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t06-100-30-alpha.mlib (calibrate = 1).
Calibrating to sequence database.
Found 8041 sequences in 1 file; selected 8041 sequences
Model T0334.t06-100-30-alpha calibrated to tau=0.9252 and lambda=1.2981
gmake[1]: Nothing to be done for `T0334.t06-100-30-alpha.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t06-100-30-alpha-scores < T0334.t06-100-30-alpha.dist > T0334.t06-100-30-alpha-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.100-30-alpha-scores < T0334.t06-100-30-alpha-scores.rdb > T0334.t06-100-30-alpha-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-alpha multi-track target model scores" \
T0334.t06-100-30-alpha-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.bys
/projects/compbio/bin/i686/hmmscore T0334.t06-100-30-bys \
-verbose 0 \
-calibrate 1 \
-alphabet protein,BYS \
-trackmod T0334.t06.w0.5.mod,T0334.t06.bys.mod \
-db /projects/compbio/experiments/models.97/indexes/t06.x-seqs,/projects/compbio/experiments/models.97/indexes/t06.byss \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t06-100-30-bys.mlib (calibrate = 1).
Calibrating to sequence database.
Found 8041 sequences in 1 file; selected 8041 sequences
Model T0334.t06-100-30-bys calibrated to tau=0.8897 and lambda=1.3742
gmake[1]: Nothing to be done for `T0334.t06-100-30-bys.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t06-100-30-bys-scores < T0334.t06-100-30-bys.dist > T0334.t06-100-30-bys-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.100-30-bys-scores < T0334.t06-100-30-bys-scores.rdb > T0334.t06-100-30-bys-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-bys multi-track target model scores" \
T0334.t06-100-30-bys-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.dssp-ehl2
/projects/compbio/bin/i686/hmmscore T0334.t06-100-30-dssp-ehl2 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,EHL2 \
-trackmod T0334.t06.w0.5.mod,T0334.t06.dssp-ehl2.mod \
-db /projects/compbio/experiments/models.97/indexes/t06.x-seqs,/projects/compbio/experiments/models.97/indexes/t06.dssps \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t06-100-30-dssp-ehl2.mlib (calibrate = 1).
Calibrating to sequence database.
Found 8041 sequences in 1 file; selected 8041 sequences
Model T0334.t06-100-30-dssp-ehl2 calibrated to tau=0.8444 and lambda=0.8759
gmake[1]: Nothing to be done for `T0334.t06-100-30-dssp-ehl2.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t06-100-30-dssp-ehl2-scores < T0334.t06-100-30-dssp-ehl2.dist > T0334.t06-100-30-dssp-ehl2-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.100-30-dssp-ehl2-scores < T0334.t06-100-30-dssp-ehl2-scores.rdb > T0334.t06-100-30-dssp-ehl2-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-dssp-ehl2 multi-track target model scores" \
T0334.t06-100-30-dssp-ehl2-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.n_notor2
/projects/compbio/bin/i686/hmmscore T0334.t06-100-30-n_notor2 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,N_NOTOR2 \
-trackmod T0334.t06.w0.5.mod,T0334.t06.n_notor2.mod \
-db /projects/compbio/experiments/models.97/indexes/t06.x-seqs,/projects/compbio/experiments/models.97/indexes/t06.n_notor2s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t06-100-30-n_notor2.mlib (calibrate = 1).
Calibrating to sequence database.
Found 8041 sequences in 1 file; selected 8041 sequences
Model T0334.t06-100-30-n_notor2 calibrated to tau=0.8051 and lambda=1.1742
gmake[1]: Nothing to be done for `T0334.t06-100-30-n_notor2.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t06-100-30-n_notor2-scores < T0334.t06-100-30-n_notor2.dist > T0334.t06-100-30-n_notor2-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.100-30-n_notor2-scores < T0334.t06-100-30-n_notor2-scores.rdb > T0334.t06-100-30-n_notor2-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-n_notor2 multi-track target model scores" \
T0334.t06-100-30-n_notor2-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.o_notor2
/projects/compbio/bin/i686/hmmscore T0334.t06-100-30-o_notor2 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,O_NOTOR2 \
-trackmod T0334.t06.w0.5.mod,T0334.t06.o_notor2.mod \
-db /projects/compbio/experiments/models.97/indexes/t06.x-seqs,/projects/compbio/experiments/models.97/indexes/t06.o_notor2s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t06-100-30-o_notor2.mlib (calibrate = 1).
Calibrating to sequence database.
Found 8041 sequences in 1 file; selected 8041 sequences
Model T0334.t06-100-30-o_notor2 calibrated to tau=0.8019 and lambda=1.5539
gmake[1]: Nothing to be done for `T0334.t06-100-30-o_notor2.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t06-100-30-o_notor2-scores < T0334.t06-100-30-o_notor2.dist > T0334.t06-100-30-o_notor2-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.100-30-o_notor2-scores < T0334.t06-100-30-o_notor2-scores.rdb > T0334.t06-100-30-o_notor2-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-o_notor2 multi-track target model scores" \
T0334.t06-100-30-o_notor2-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.CB_burial_14_7
/projects/compbio/bin/i686/hmmscore T0334.t06-100-30-CB_burial_14_7 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,CB_BURIAL_14_7 \
-trackmod T0334.t06.w0.5.mod,T0334.t06.CB_burial_14_7.mod \
-db /projects/compbio/experiments/models.97/indexes/t06.x-seqs,/projects/compbio/experiments/models.97/indexes/t06.CB-burial-14-7s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t06-100-30-CB_burial_14_7.mlib (calibrate = 1).
Calibrating to sequence database.
Found 8041 sequences in 1 file; selected 8041 sequences
Model T0334.t06-100-30-CB_burial_14_7 calibrated to tau=0.8780 and lambda=1.1473
gmake[1]: Nothing to be done for `T0334.t06-100-30-CB_burial_14_7.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t06-100-30-CB_burial_14_7-scores < T0334.t06-100-30-CB_burial_14_7.dist > T0334.t06-100-30-CB_burial_14_7-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.100-30-CB_burial_14_7-scores < T0334.t06-100-30-CB_burial_14_7-scores.rdb > T0334.t06-100-30-CB_burial_14_7-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-CB_burial_14_7 multi-track target model scores" \
T0334.t06-100-30-CB_burial_14_7-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.near-backbone-11
/projects/compbio/bin/i686/hmmscore T0334.t06-100-30-near-backbone-11 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,NEAR-BACKBONE-11 \
-trackmod T0334.t06.w0.5.mod,T0334.t06.near-backbone-11.mod \
-db /projects/compbio/experiments/models.97/indexes/t06.x-seqs,/projects/compbio/experiments/models.97/indexes/t06.near-backbone-11s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t06-100-30-near-backbone-11.mlib (calibrate = 1).
Calibrating to sequence database.
Found 8041 sequences in 1 file; selected 8041 sequences
Model T0334.t06-100-30-near-backbone-11 calibrated to tau=0.8597 and lambda=1.3726
gmake[1]: Nothing to be done for `T0334.t06-100-30-near-backbone-11.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t06-100-30-near-backbone-11-scores < T0334.t06-100-30-near-backbone-11.dist > T0334.t06-100-30-near-backbone-11-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.100-30-near-backbone-11-scores < T0334.t06-100-30-near-backbone-11-scores.rdb > T0334.t06-100-30-near-backbone-11-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-near-backbone-11 multi-track target model scores" \
T0334.t06-100-30-near-backbone-11-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k STRUCT_ALPH=str2 BURIAL_ALPH=CB_burial_14_7 \
AL_METHOD=t06 \
t06-100-40-40-str2+CB_burial_14_7-scores
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
/projects/compbio/bin/i686/hmmscore T0334.t06-100-40-40-str2+CB_burial_14_7 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,str2,CB_BURIAL_14_7 \
-trackmod T0334.t06.w0.5.mod,T0334.t06.str2.mod,T0334.t06.CB_burial_14_7.mod \
-db /projects/compbio/experiments/models.97/indexes/t06.x-seqs,/projects/compbio/experiments/models.97/indexes/t06.str2s,/projects/compbio/experiments/models.97/indexes/t06.CB-burial-14-7s \
-trackcoeff 1.0,0.4,0.4 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t06-100-40-40-str2+CB_burial_14_7.mlib (calibrate = 1).
Calibrating to sequence database.
Found 8041 sequences in 1 file; selected 8041 sequences
Model T0334.t06-100-40-40-str2+CB_burial_14_7 calibrated to tau=0.8113 and lambda=0.5913
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t06-100-40-40-str2+CB_burial_14_7-scores < T0334.t06-100-40-40-str2+CB_burial_14_7.dist > T0334.t06-100-40-40-str2+CB_burial_14_7-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.100-40-40-str2+CB_burial_14_7-scores < T0334.t06-100-40-40-str2+CB_burial_14_7-scores.rdb > T0334.t06-100-40-40-str2+CB_burial_14_7-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-40-40-str2+CB_burial_14_7 multi-track target model scores" \
T0334.t06-100-40-40-str2+CB_burial_14_7-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k STRUCT_ALPH=str2 BURIAL_ALPH=near-backbone-11 \
AL_METHOD=t06 \
t06-80-60-80-str2+near-backbone-11-scores
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t06.str2
/projects/compbio/bin/i686/hmmscore T0334.t06-80-60-80-str2+near-backbone-11 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,str2,NEAR-BACKBONE-11 \
-trackmod T0334.t06.w0.5.mod,T0334.t06.str2.mod,T0334.t06.near-backbone-11.mod \
-db /projects/compbio/experiments/models.97/indexes/t06.x-seqs,/projects/compbio/experiments/models.97/indexes/t06.str2s,/projects/compbio/experiments/models.97/indexes/t06.near-backbone-11s \
-trackcoeff 0.8,0.6,0.8 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t06-80-60-80-str2+near-backbone-11.mlib (calibrate = 1).
Calibrating to sequence database.
Found 8041 sequences in 1 file; selected 8041 sequences
Model T0334.t06-80-60-80-str2+near-backbone-11 calibrated to tau=0.7320 and lambda=0.4341
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t06-80-60-80-str2+near-backbone-11-scores < T0334.t06-80-60-80-str2+near-backbone-11.dist > T0334.t06-80-60-80-str2+near-backbone-11-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.80-60-80-str2+near-backbone-11-scores < T0334.t06-80-60-80-str2+near-backbone-11-scores.rdb > T0334.t06-80-60-80-str2+near-backbone-11-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores" \
T0334.t06-80-60-80-str2+near-backbone-11-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
date
Mon Jun 19 13:54:56 PDT 2006
echo '
' >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/usr/bin/gmake -k STRUCT_ALPH=str2 AL_METHOD=t04 T0334.t04-100-30-str2.mlib T0334.t04-100-30-str2.dist t04-100-30-str2-scores; /usr/bin/gmake -k STRUCT_ALPH=stride-ebghtl AL_METHOD=t04 T0334.t04-100-30-stride-ebghtl.mlib T0334.t04-100-30-stride-ebghtl.dist t04-100-30-stride-ebghtl-scores; /usr/bin/gmake -k STRUCT_ALPH=dssp-ebghstl AL_METHOD=t04 T0334.t04-100-30-dssp-ebghstl.mlib T0334.t04-100-30-dssp-ebghstl.dist t04-100-30-dssp-ebghstl-scores; /usr/bin/gmake -k STRUCT_ALPH=alpha AL_METHOD=t04 T0334.t04-100-30-alpha.mlib T0334.t04-100-30-alpha.dist t04-100-30-alpha-scores; /usr/bin/gmake -k STRUCT_ALPH=bys AL_METHOD=t04 T0334.t04-100-30-bys.mlib T0334.t04-100-30-bys.dist t04-100-30-bys-scores; /usr/bin/gmake -k STRUCT_ALPH=dssp-ehl2 AL_METHOD=t04 T0334.t04-100-30-dssp-ehl2.mlib T0334.t04-100-30-dssp-ehl2.dist t04-100-30-dssp-ehl2-scores; /usr/bin/gmake -k STRUCT_ALPH=n_notor2 AL_METHOD=t04 T0334.t04-100-30-n_notor2.mlib T0334.t04-100-30-n_notor2.dist t04-100-30-n_notor2-scores; /usr/bin/gmake -k STRUCT_ALPH=o_notor2 AL_METHOD=t04 T0334.t04-100-30-o_notor2.mlib T0334.t04-100-30-o_notor2.dist t04-100-30-o_notor2-scores; /usr/bin/gmake -k STRUCT_ALPH=CB_burial_14_7 AL_METHOD=t04 T0334.t04-100-30-CB_burial_14_7.mlib T0334.t04-100-30-CB_burial_14_7.dist t04-100-30-CB_burial_14_7-scores; /usr/bin/gmake -k STRUCT_ALPH=near-backbone-11 AL_METHOD=t04 T0334.t04-100-30-near-backbone-11.mlib T0334.t04-100-30-near-backbone-11.dist t04-100-30-near-backbone-11-scores;
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.str2
/projects/compbio/bin/i686/hmmscore T0334.t04-100-30-str2 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,STR2 \
-trackmod T0334.t04.w0.5.mod,T0334.t04.str2.mod \
-db /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.str2s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t04-100-30-str2.mlib (calibrate = 1).
Calibrating to sequence database.
Found 10897 sequences in 1 file; selected 10897 sequences
Model T0334.t04-100-30-str2 calibrated to tau=0.8967 and lambda=0.8658
gmake[1]: Nothing to be done for `T0334.t04-100-30-str2.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t04-100-30-str2-scores < T0334.t04-100-30-str2.dist > T0334.t04-100-30-str2-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t04.100-30-str2-scores < T0334.t04-100-30-str2-scores.rdb > T0334.t04-100-30-str2-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-str2 multi-track target model scores" \
T0334.t04-100-30-str2-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.stride-ebghtl
/projects/compbio/bin/i686/hmmscore T0334.t04-100-30-stride-ebghtl \
-verbose 0 \
-calibrate 1 \
-alphabet protein,EBGHTL \
-trackmod T0334.t04.w0.5.mod,T0334.t04.stride-ebghtl.mod \
-db /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.2ds \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t04-100-30-stride-ebghtl.mlib (calibrate = 1).
Calibrating to sequence database.
Found 10897 sequences in 1 file; selected 10897 sequences
Model T0334.t04-100-30-stride-ebghtl calibrated to tau=0.8669 and lambda=0.7589
gmake[1]: Nothing to be done for `T0334.t04-100-30-stride-ebghtl.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t04-100-30-stride-ebghtl-scores < T0334.t04-100-30-stride-ebghtl.dist > T0334.t04-100-30-stride-ebghtl-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t04.100-30-stride-ebghtl-scores < T0334.t04-100-30-stride-ebghtl-scores.rdb > T0334.t04-100-30-stride-ebghtl-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-stride-ebghtl multi-track target model scores" \
T0334.t04-100-30-stride-ebghtl-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.dssp-ebghstl
/projects/compbio/bin/i686/hmmscore T0334.t04-100-30-dssp-ebghstl \
-verbose 0 \
-calibrate 1 \
-alphabet protein,EBGHSTL \
-trackmod T0334.t04.w0.5.mod,T0334.t04.dssp-ebghstl.mod \
-db /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.dssps \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t04-100-30-dssp-ebghstl.mlib (calibrate = 1).
Calibrating to sequence database.
Found 10897 sequences in 1 file; selected 10897 sequences
Model T0334.t04-100-30-dssp-ebghstl calibrated to tau=0.9088 and lambda=0.8157
gmake[1]: Nothing to be done for `T0334.t04-100-30-dssp-ebghstl.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t04-100-30-dssp-ebghstl-scores < T0334.t04-100-30-dssp-ebghstl.dist > T0334.t04-100-30-dssp-ebghstl-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t04.100-30-dssp-ebghstl-scores < T0334.t04-100-30-dssp-ebghstl-scores.rdb > T0334.t04-100-30-dssp-ebghstl-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-dssp-ebghstl multi-track target model scores" \
T0334.t04-100-30-dssp-ebghstl-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.alpha
/projects/compbio/bin/i686/hmmscore T0334.t04-100-30-alpha \
-verbose 0 \
-calibrate 1 \
-alphabet protein,ALPHA \
-trackmod T0334.t04.w0.5.mod,T0334.t04.alpha.mod \
-db /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.alphas \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t04-100-30-alpha.mlib (calibrate = 1).
Calibrating to sequence database.
Found 10897 sequences in 1 file; selected 10897 sequences
Model T0334.t04-100-30-alpha calibrated to tau=0.8640 and lambda=1.3209
gmake[1]: Nothing to be done for `T0334.t04-100-30-alpha.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t04-100-30-alpha-scores < T0334.t04-100-30-alpha.dist > T0334.t04-100-30-alpha-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t04.100-30-alpha-scores < T0334.t04-100-30-alpha-scores.rdb > T0334.t04-100-30-alpha-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-alpha multi-track target model scores" \
T0334.t04-100-30-alpha-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.bys
/projects/compbio/bin/i686/hmmscore T0334.t04-100-30-bys \
-verbose 0 \
-calibrate 1 \
-alphabet protein,BYS \
-trackmod T0334.t04.w0.5.mod,T0334.t04.bys.mod \
-db /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.byss \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t04-100-30-bys.mlib (calibrate = 1).
Calibrating to sequence database.
Found 10897 sequences in 1 file; selected 10897 sequences
Model T0334.t04-100-30-bys calibrated to tau=0.8413 and lambda=1.3053
gmake[1]: Nothing to be done for `T0334.t04-100-30-bys.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t04-100-30-bys-scores < T0334.t04-100-30-bys.dist > T0334.t04-100-30-bys-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t04.100-30-bys-scores < T0334.t04-100-30-bys-scores.rdb > T0334.t04-100-30-bys-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-bys multi-track target model scores" \
T0334.t04-100-30-bys-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.dssp-ehl2
/projects/compbio/bin/i686/hmmscore T0334.t04-100-30-dssp-ehl2 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,EHL2 \
-trackmod T0334.t04.w0.5.mod,T0334.t04.dssp-ehl2.mod \
-db /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.dssps \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t04-100-30-dssp-ehl2.mlib (calibrate = 1).
Calibrating to sequence database.
Found 10897 sequences in 1 file; selected 10897 sequences
Model T0334.t04-100-30-dssp-ehl2 calibrated to tau=0.8533 and lambda=0.7917
gmake[1]: Nothing to be done for `T0334.t04-100-30-dssp-ehl2.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t04-100-30-dssp-ehl2-scores < T0334.t04-100-30-dssp-ehl2.dist > T0334.t04-100-30-dssp-ehl2-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t04.100-30-dssp-ehl2-scores < T0334.t04-100-30-dssp-ehl2-scores.rdb > T0334.t04-100-30-dssp-ehl2-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-dssp-ehl2 multi-track target model scores" \
T0334.t04-100-30-dssp-ehl2-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.n_notor2
/projects/compbio/bin/i686/hmmscore T0334.t04-100-30-n_notor2 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,N_NOTOR2 \
-trackmod T0334.t04.w0.5.mod,T0334.t04.n_notor2.mod \
-db /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.n_notor2s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t04-100-30-n_notor2.mlib (calibrate = 1).
Calibrating to sequence database.
Found 10897 sequences in 1 file; selected 10897 sequences
Model T0334.t04-100-30-n_notor2 calibrated to tau=0.8595 and lambda=0.9226
gmake[1]: Nothing to be done for `T0334.t04-100-30-n_notor2.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t04-100-30-n_notor2-scores < T0334.t04-100-30-n_notor2.dist > T0334.t04-100-30-n_notor2-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t04.100-30-n_notor2-scores < T0334.t04-100-30-n_notor2-scores.rdb > T0334.t04-100-30-n_notor2-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-n_notor2 multi-track target model scores" \
T0334.t04-100-30-n_notor2-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.o_notor2
/projects/compbio/bin/i686/hmmscore T0334.t04-100-30-o_notor2 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,O_NOTOR2 \
-trackmod T0334.t04.w0.5.mod,T0334.t04.o_notor2.mod \
-db /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.o_notor2s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t04-100-30-o_notor2.mlib (calibrate = 1).
Calibrating to sequence database.
Error: Couldn't open file /projects/compbio/experiments/models.97/indexes/t04.o_notor2s: No such file or directory
gmake[1]: *** [T0334.t04-100-30-o_notor2.mlib] Error 1
gmake[1]: Target `t04-100-30-o_notor2-scores' not remade because of errors.
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.CB_burial_14_7
/projects/compbio/bin/i686/hmmscore T0334.t04-100-30-CB_burial_14_7 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,CB_BURIAL_14_7 \
-trackmod T0334.t04.w0.5.mod,T0334.t04.CB_burial_14_7.mod \
-db /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.CB-burial-14-7s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t04-100-30-CB_burial_14_7.mlib (calibrate = 1).
Calibrating to sequence database.
Found 10897 sequences in 1 file; selected 10897 sequences
Model T0334.t04-100-30-CB_burial_14_7 calibrated to tau=0.8819 and lambda=1.0265
gmake[1]: Nothing to be done for `T0334.t04-100-30-CB_burial_14_7.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t04-100-30-CB_burial_14_7-scores < T0334.t04-100-30-CB_burial_14_7.dist > T0334.t04-100-30-CB_burial_14_7-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t04.100-30-CB_burial_14_7-scores < T0334.t04-100-30-CB_burial_14_7-scores.rdb > T0334.t04-100-30-CB_burial_14_7-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-CB_burial_14_7 multi-track target model scores" \
T0334.t04-100-30-CB_burial_14_7-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.near-backbone-11
/projects/compbio/bin/i686/hmmscore T0334.t04-100-30-near-backbone-11 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,NEAR-BACKBONE-11 \
-trackmod T0334.t04.w0.5.mod,T0334.t04.near-backbone-11.mod \
-db /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.near-backbone-11s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t04-100-30-near-backbone-11.mlib (calibrate = 1).
Calibrating to sequence database.
Found 10897 sequences in 1 file; selected 10897 sequences
Model T0334.t04-100-30-near-backbone-11 calibrated to tau=0.8598 and lambda=1.3050
gmake[1]: Nothing to be done for `T0334.t04-100-30-near-backbone-11.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t04-100-30-near-backbone-11-scores < T0334.t04-100-30-near-backbone-11.dist > T0334.t04-100-30-near-backbone-11-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t04.100-30-near-backbone-11-scores < T0334.t04-100-30-near-backbone-11-scores.rdb > T0334.t04-100-30-near-backbone-11-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-near-backbone-11 multi-track target model scores" \
T0334.t04-100-30-near-backbone-11-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k STRUCT_ALPH=str2 BURIAL_ALPH=CB_burial_14_7 \
AL_METHOD=t04 \
t04-100-40-40-str2+CB_burial_14_7-scores
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.str2
/projects/compbio/bin/i686/hmmscore T0334.t04-100-40-40-str2+CB_burial_14_7 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,str2,CB_BURIAL_14_7 \
-trackmod T0334.t04.w0.5.mod,T0334.t04.str2.mod,T0334.t04.CB_burial_14_7.mod \
-db /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.str2s,/projects/compbio/experiments/models.97/indexes/t04.CB-burial-14-7s \
-trackcoeff 1.0,0.4,0.4 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t04-100-40-40-str2+CB_burial_14_7.mlib (calibrate = 1).
Calibrating to sequence database.
Found 10897 sequences in 1 file; selected 10897 sequences
Model T0334.t04-100-40-40-str2+CB_burial_14_7 calibrated to tau=0.8471 and lambda=0.5302
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t04-100-40-40-str2+CB_burial_14_7-scores < T0334.t04-100-40-40-str2+CB_burial_14_7.dist > T0334.t04-100-40-40-str2+CB_burial_14_7-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t04.100-40-40-str2+CB_burial_14_7-scores < T0334.t04-100-40-40-str2+CB_burial_14_7-scores.rdb > T0334.t04-100-40-40-str2+CB_burial_14_7-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-40-40-str2+CB_burial_14_7 multi-track target model scores" \
T0334.t04-100-40-40-str2+CB_burial_14_7-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k STRUCT_ALPH=str2 BURIAL_ALPH=near-backbone-11 \
AL_METHOD=t04 \
t04-80-60-80-str2+near-backbone-11-scores
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t04.str2
/projects/compbio/bin/i686/hmmscore T0334.t04-80-60-80-str2+near-backbone-11 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,str2,NEAR-BACKBONE-11 \
-trackmod T0334.t04.w0.5.mod,T0334.t04.str2.mod,T0334.t04.near-backbone-11.mod \
-db /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.str2s,/projects/compbio/experiments/models.97/indexes/t04.near-backbone-11s \
-trackcoeff 0.8,0.6,0.8 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t04-80-60-80-str2+near-backbone-11.mlib (calibrate = 1).
Calibrating to sequence database.
Found 10897 sequences in 1 file; selected 10897 sequences
Model T0334.t04-80-60-80-str2+near-backbone-11 calibrated to tau=0.6489 and lambda=0.5692
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t04-80-60-80-str2+near-backbone-11-scores < T0334.t04-80-60-80-str2+near-backbone-11.dist > T0334.t04-80-60-80-str2+near-backbone-11-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t04.80-60-80-str2+near-backbone-11-scores < T0334.t04-80-60-80-str2+near-backbone-11-scores.rdb > T0334.t04-80-60-80-str2+near-backbone-11-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores" \
T0334.t04-80-60-80-str2+near-backbone-11-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k STRUCT_ALPH=str2 AL_METHOD=t2k T0334.t2k-100-30-str2.mlib T0334.t2k-100-30-str2.dist t2k-100-30-str2-scores; /usr/bin/gmake -k STRUCT_ALPH=stride-ebghtl AL_METHOD=t2k T0334.t2k-100-30-stride-ebghtl.mlib T0334.t2k-100-30-stride-ebghtl.dist t2k-100-30-stride-ebghtl-scores; /usr/bin/gmake -k STRUCT_ALPH=dssp-ebghstl AL_METHOD=t2k T0334.t2k-100-30-dssp-ebghstl.mlib T0334.t2k-100-30-dssp-ebghstl.dist t2k-100-30-dssp-ebghstl-scores; /usr/bin/gmake -k STRUCT_ALPH=alpha AL_METHOD=t2k T0334.t2k-100-30-alpha.mlib T0334.t2k-100-30-alpha.dist t2k-100-30-alpha-scores; /usr/bin/gmake -k STRUCT_ALPH=bys AL_METHOD=t2k T0334.t2k-100-30-bys.mlib T0334.t2k-100-30-bys.dist t2k-100-30-bys-scores; /usr/bin/gmake -k STRUCT_ALPH=dssp-ehl2 AL_METHOD=t2k T0334.t2k-100-30-dssp-ehl2.mlib T0334.t2k-100-30-dssp-ehl2.dist t2k-100-30-dssp-ehl2-scores; /usr/bin/gmake -k STRUCT_ALPH=n_notor2 AL_METHOD=t2k T0334.t2k-100-30-n_notor2.mlib T0334.t2k-100-30-n_notor2.dist t2k-100-30-n_notor2-scores; /usr/bin/gmake -k STRUCT_ALPH=o_notor2 AL_METHOD=t2k T0334.t2k-100-30-o_notor2.mlib T0334.t2k-100-30-o_notor2.dist t2k-100-30-o_notor2-scores; /usr/bin/gmake -k STRUCT_ALPH=CB_burial_14_7 AL_METHOD=t2k T0334.t2k-100-30-CB_burial_14_7.mlib T0334.t2k-100-30-CB_burial_14_7.dist t2k-100-30-CB_burial_14_7-scores; /usr/bin/gmake -k STRUCT_ALPH=near-backbone-11 AL_METHOD=t2k T0334.t2k-100-30-near-backbone-11.mlib T0334.t2k-100-30-near-backbone-11.dist t2k-100-30-near-backbone-11-scores;
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.str2
/projects/compbio/bin/i686/hmmscore T0334.t2k-100-30-str2 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,STR2 \
-trackmod T0334.t2k.w0.5.mod,T0334.t2k.str2.mod \
-db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.str2s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t2k-100-30-str2.mlib (calibrate = 1).
Calibrating to sequence database.
Found 14906 sequences in 1 file; selected 14906 sequences
Model T0334.t2k-100-30-str2 calibrated to tau=0.7934 and lambda=1.4037
gmake[1]: Nothing to be done for `T0334.t2k-100-30-str2.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t2k-100-30-str2-scores < T0334.t2k-100-30-str2.dist > T0334.t2k-100-30-str2-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t2k.100-30-str2-scores < T0334.t2k-100-30-str2-scores.rdb > T0334.t2k-100-30-str2-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-str2 multi-track target model scores" \
T0334.t2k-100-30-str2-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.stride-ebghtl
/projects/compbio/bin/i686/hmmscore T0334.t2k-100-30-stride-ebghtl \
-verbose 0 \
-calibrate 1 \
-alphabet protein,EBGHTL \
-trackmod T0334.t2k.w0.5.mod,T0334.t2k.stride-ebghtl.mod \
-db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.2ds \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t2k-100-30-stride-ebghtl.mlib (calibrate = 1).
Calibrating to sequence database.
Found 14906 sequences in 1 file; selected 14906 sequences
Model T0334.t2k-100-30-stride-ebghtl calibrated to tau=0.7753 and lambda=1.2668
gmake[1]: Nothing to be done for `T0334.t2k-100-30-stride-ebghtl.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t2k-100-30-stride-ebghtl-scores < T0334.t2k-100-30-stride-ebghtl.dist > T0334.t2k-100-30-stride-ebghtl-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t2k.100-30-stride-ebghtl-scores < T0334.t2k-100-30-stride-ebghtl-scores.rdb > T0334.t2k-100-30-stride-ebghtl-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-stride-ebghtl multi-track target model scores" \
T0334.t2k-100-30-stride-ebghtl-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.dssp-ebghstl
/projects/compbio/bin/i686/hmmscore T0334.t2k-100-30-dssp-ebghstl \
-verbose 0 \
-calibrate 1 \
-alphabet protein,EBGHSTL \
-trackmod T0334.t2k.w0.5.mod,T0334.t2k.dssp-ebghstl.mod \
-db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.dssps \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t2k-100-30-dssp-ebghstl.mlib (calibrate = 1).
Calibrating to sequence database.
Found 14906 sequences in 1 file; selected 14906 sequences
Model T0334.t2k-100-30-dssp-ebghstl calibrated to tau=0.7935 and lambda=1.3782
gmake[1]: Nothing to be done for `T0334.t2k-100-30-dssp-ebghstl.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t2k-100-30-dssp-ebghstl-scores < T0334.t2k-100-30-dssp-ebghstl.dist > T0334.t2k-100-30-dssp-ebghstl-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t2k.100-30-dssp-ebghstl-scores < T0334.t2k-100-30-dssp-ebghstl-scores.rdb > T0334.t2k-100-30-dssp-ebghstl-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-dssp-ebghstl multi-track target model scores" \
T0334.t2k-100-30-dssp-ebghstl-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.alpha
/projects/compbio/bin/i686/hmmscore T0334.t2k-100-30-alpha \
-verbose 0 \
-calibrate 1 \
-alphabet protein,ALPHA \
-trackmod T0334.t2k.w0.5.mod,T0334.t2k.alpha.mod \
-db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.alphas \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t2k-100-30-alpha.mlib (calibrate = 1).
Calibrating to sequence database.
Found 14906 sequences in 1 file; selected 14906 sequences
Model T0334.t2k-100-30-alpha calibrated to tau=0.7106 and lambda=2.3480
gmake[1]: Nothing to be done for `T0334.t2k-100-30-alpha.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t2k-100-30-alpha-scores < T0334.t2k-100-30-alpha.dist > T0334.t2k-100-30-alpha-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t2k.100-30-alpha-scores < T0334.t2k-100-30-alpha-scores.rdb > T0334.t2k-100-30-alpha-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-alpha multi-track target model scores" \
T0334.t2k-100-30-alpha-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.bys
/projects/compbio/bin/i686/hmmscore T0334.t2k-100-30-bys \
-verbose 0 \
-calibrate 1 \
-alphabet protein,BYS \
-trackmod T0334.t2k.w0.5.mod,T0334.t2k.bys.mod \
-db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.byss \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t2k-100-30-bys.mlib (calibrate = 1).
Calibrating to sequence database.
Found 14906 sequences in 1 file; selected 14906 sequences
Model T0334.t2k-100-30-bys calibrated to tau=0.7140 and lambda=2.4990
gmake[1]: Nothing to be done for `T0334.t2k-100-30-bys.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t2k-100-30-bys-scores < T0334.t2k-100-30-bys.dist > T0334.t2k-100-30-bys-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t2k.100-30-bys-scores < T0334.t2k-100-30-bys-scores.rdb > T0334.t2k-100-30-bys-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-bys multi-track target model scores" \
T0334.t2k-100-30-bys-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.dssp-ehl2
/projects/compbio/bin/i686/hmmscore T0334.t2k-100-30-dssp-ehl2 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,EHL2 \
-trackmod T0334.t2k.w0.5.mod,T0334.t2k.dssp-ehl2.mod \
-db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.dssps \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t2k-100-30-dssp-ehl2.mlib (calibrate = 1).
Calibrating to sequence database.
Found 14906 sequences in 1 file; selected 14906 sequences
Model T0334.t2k-100-30-dssp-ehl2 calibrated to tau=0.7521 and lambda=1.4043
gmake[1]: Nothing to be done for `T0334.t2k-100-30-dssp-ehl2.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t2k-100-30-dssp-ehl2-scores < T0334.t2k-100-30-dssp-ehl2.dist > T0334.t2k-100-30-dssp-ehl2-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t2k.100-30-dssp-ehl2-scores < T0334.t2k-100-30-dssp-ehl2-scores.rdb > T0334.t2k-100-30-dssp-ehl2-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-dssp-ehl2 multi-track target model scores" \
T0334.t2k-100-30-dssp-ehl2-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.n_notor2
/projects/compbio/bin/i686/hmmscore T0334.t2k-100-30-n_notor2 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,N_NOTOR2 \
-trackmod T0334.t2k.w0.5.mod,T0334.t2k.n_notor2.mod \
-db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.n_notor2s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t2k-100-30-n_notor2.mlib (calibrate = 1).
Calibrating to sequence database.
Found 14906 sequences in 1 file; selected 14906 sequences
Model T0334.t2k-100-30-n_notor2 calibrated to tau=0.6433 and lambda=1.4684
gmake[1]: Nothing to be done for `T0334.t2k-100-30-n_notor2.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t2k-100-30-n_notor2-scores < T0334.t2k-100-30-n_notor2.dist > T0334.t2k-100-30-n_notor2-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t2k.100-30-n_notor2-scores < T0334.t2k-100-30-n_notor2-scores.rdb > T0334.t2k-100-30-n_notor2-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-n_notor2 multi-track target model scores" \
T0334.t2k-100-30-n_notor2-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.o_notor2
/projects/compbio/bin/i686/hmmscore T0334.t2k-100-30-o_notor2 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,O_NOTOR2 \
-trackmod T0334.t2k.w0.5.mod,T0334.t2k.o_notor2.mod \
-db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.o_notor2s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t2k-100-30-o_notor2.mlib (calibrate = 1).
Calibrating to sequence database.
Error: Couldn't open file /projects/compbio/experiments/models.97/indexes/t2k.o_notor2s: No such file or directory
gmake[1]: *** [T0334.t2k-100-30-o_notor2.mlib] Error 1
gmake[1]: Target `t2k-100-30-o_notor2-scores' not remade because of errors.
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.CB_burial_14_7
/projects/compbio/bin/i686/hmmscore T0334.t2k-100-30-CB_burial_14_7 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,CB_BURIAL_14_7 \
-trackmod T0334.t2k.w0.5.mod,T0334.t2k.CB_burial_14_7.mod \
-db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.CB-burial-14-7s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t2k-100-30-CB_burial_14_7.mlib (calibrate = 1).
Calibrating to sequence database.
Found 14906 sequences in 1 file; selected 14906 sequences
Model T0334.t2k-100-30-CB_burial_14_7 calibrated to tau=0.7968 and lambda=1.5872
gmake[1]: Nothing to be done for `T0334.t2k-100-30-CB_burial_14_7.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t2k-100-30-CB_burial_14_7-scores < T0334.t2k-100-30-CB_burial_14_7.dist > T0334.t2k-100-30-CB_burial_14_7-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t2k.100-30-CB_burial_14_7-scores < T0334.t2k-100-30-CB_burial_14_7-scores.rdb > T0334.t2k-100-30-CB_burial_14_7-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-CB_burial_14_7 multi-track target model scores" \
T0334.t2k-100-30-CB_burial_14_7-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.near-backbone-11
/projects/compbio/bin/i686/hmmscore T0334.t2k-100-30-near-backbone-11 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,NEAR-BACKBONE-11 \
-trackmod T0334.t2k.w0.5.mod,T0334.t2k.near-backbone-11.mod \
-db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.near-backbone-11s \
-trackcoeff 1.0,0.3 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t2k-100-30-near-backbone-11.mlib (calibrate = 1).
Calibrating to sequence database.
Found 14906 sequences in 1 file; selected 14906 sequences
Model T0334.t2k-100-30-near-backbone-11 calibrated to tau=0.7325 and lambda=2.6962
gmake[1]: Nothing to be done for `T0334.t2k-100-30-near-backbone-11.dist'.
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t2k-100-30-near-backbone-11-scores < T0334.t2k-100-30-near-backbone-11.dist > T0334.t2k-100-30-near-backbone-11-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t2k.100-30-near-backbone-11-scores < T0334.t2k-100-30-near-backbone-11-scores.rdb > T0334.t2k-100-30-near-backbone-11-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-30-near-backbone-11 multi-track target model scores" \
T0334.t2k-100-30-near-backbone-11-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k STRUCT_ALPH=str2 BURIAL_ALPH=CB_burial_14_7 \
AL_METHOD=t2k \
t2k-100-40-40-str2+CB_burial_14_7-scores
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.str2
/projects/compbio/bin/i686/hmmscore T0334.t2k-100-40-40-str2+CB_burial_14_7 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,str2,CB_BURIAL_14_7 \
-trackmod T0334.t2k.w0.5.mod,T0334.t2k.str2.mod,T0334.t2k.CB_burial_14_7.mod \
-db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.str2s,/projects/compbio/experiments/models.97/indexes/t2k.CB-burial-14-7s \
-trackcoeff 1.0,0.4,0.4 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t2k-100-40-40-str2+CB_burial_14_7.mlib (calibrate = 1).
Calibrating to sequence database.
Found 14906 sequences in 1 file; selected 14906 sequences
Model T0334.t2k-100-40-40-str2+CB_burial_14_7 calibrated to tau=0.8443 and lambda=0.6060
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t2k-100-40-40-str2+CB_burial_14_7-scores < T0334.t2k-100-40-40-str2+CB_burial_14_7.dist > T0334.t2k-100-40-40-str2+CB_burial_14_7-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t2k.100-40-40-str2+CB_burial_14_7-scores < T0334.t2k-100-40-40-str2+CB_burial_14_7-scores.rdb > T0334.t2k-100-40-40-str2+CB_burial_14_7-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/100-40-40-str2+CB_burial_14_7 multi-track target model scores" \
T0334.t2k-100-40-40-str2+CB_burial_14_7-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/usr/bin/gmake -k STRUCT_ALPH=str2 BURIAL_ALPH=near-backbone-11 \
AL_METHOD=t2k \
t2k-80-60-80-str2+near-backbone-11-scores
gmake[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:697: SECONDARY_TARGET = T0334.t2k.str2
/projects/compbio/bin/i686/hmmscore T0334.t2k-80-60-80-str2+near-backbone-11 \
-verbose 0 \
-calibrate 1 \
-alphabet protein,str2,NEAR-BACKBONE-11 \
-trackmod T0334.t2k.w0.5.mod,T0334.t2k.str2.mod,T0334.t2k.near-backbone-11.mod \
-db /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.str2s,/projects/compbio/experiments/models.97/indexes/t2k.near-backbone-11s \
-trackcoeff 0.8,0.6,0.8 \
-sw 2 -dpstyle 0 -subtract_null 4 \
-select_score 4 -Emax 90.0
Creating calibrated model library T0334.t2k-80-60-80-str2+near-backbone-11.mlib (calibrate = 1).
Calibrating to sequence database.
Found 14906 sequences in 1 file; selected 14906 sequences
Model T0334.t2k-80-60-80-str2+near-backbone-11 calibrated to tau=0.7036 and lambda=0.5878
/projects/compbio/experiments/protein-predict/casp7/scripts/annotate_target_scores -scop /projects/compbio/data/scop/dir.cla.scop.txt.gz t2k-80-60-80-str2+near-backbone-11-scores < T0334.t2k-80-60-80-str2+near-backbone-11.dist > T0334.t2k-80-60-80-str2+near-backbone-11-scores.rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t2k.80-60-80-str2+near-backbone-11-scores < T0334.t2k-80-60-80-str2+near-backbone-11-scores.rdb > T0334.t2k-80-60-80-str2+near-backbone-11-scores.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_summary_html \
"amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores" \
T0334.t2k-80-60-80-str2+near-backbone-11-scores.html >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
gmake[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0334'
date
Mon Jun 19 15:29:14 PDT 2006
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl end_section_summary_html \
>> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/handle_summary_html.pl add_section_head_summary_html \
"Template model scores" >> /projects/compbio/experiments/protein-predict/casp7/T0334/summary.html
/projects/compbio/experiments/protein-predict/casp7/scripts/extract-guide < T0334.upper-only.a2m \
| gzip > guide.a2m.gz
/projects/compbio/bin/i686/hmmscore T0334.t06-template-lib \
-verbose 0 \
-modellibrary /projects/compbio/experiments/models.97/indexes/t06-w0.5-db.mlib \
-db_size 8041 \
-db guide.a2m.gz -rdb 1 \
-select_score 4 -emax 90.0
Opening T0334.t06-template-lib.dist-rdb for RDB distance output
% Subsequence-submodel (local) (SW = 2)
% Simple scores adjusted by +1.5*ln(seq len) (adjust_score = 2)
% Track 0 FIMs added (geometric mean of match probabilities (6))
% Single Track Model: 1qloA.t06-w0.5.mod
% Single Track Model: 1ollA.t06-w0.5.mod
% Single Track Model: 1s0aA.t06-w0.5.mod
% Single Track Model: 1jnrA.t06-w0.5.mod
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% Single Track Model: 1vrtA.t06-w0.5.mod
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% Single Track Model: 1uxzA.t06-w0.5.mod
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% Single Track Model: 1w6sA.t06-w0.5.mod
% Single Track Model: 1rm6A.t06-w0.5.mod
% Single Track Model: 1e0fI.t06-w0.5.mod
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% Single Track Model: 2a61A.t06-w0.5.mod
% Single Track Model: 1zhxA.t06-w0.5.mod
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% Single Track Model: 1vizA.t06-w0.5.mod
% Single Track Model: 1tig.t06-w0.5.mod
% Single Track Model: 1gd1O.t06-w0.5.mod
% Single Track Model: 2bn5A.t06-w0.5.mod
% Single Track Model: 1uwzA.t06-w0.5.mod
% Single Track Model: 1ltzA.t06-w0.5.mod
% Single Track Model: 1jhdA.t06-w0.5.mod
% Single Track Model: 1yn9A.t06-w0.5.mod
% Single Track Model: 1bkzA.t06-w0.5.mod
% Single Track Model: 1zr6A.t06-w0.5.mod
% Single Track Model: 1tgxA.t06-w0.5.mod
% Single Track Model: 1y9aA.t06-w0.5.mod
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% Single Track Model: 1hrkA.t06-w0.5.mod
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% Single Track Model: 2fq4A.t06-w0.5.mod
% Single Track Model: 1qf9A.t06-w0.5.mod
% Single Track Model: 1r45A.t06-w0.5.mod
% Single Track Model: 1v7cA.t06-w0.5.mod
% Single Track Model: 1my6A.t06-w0.5.mod
% Single Track Model: 1yjsA.t06-w0.5.mod
% Single Track Model: 1xm8A.t06-w0.5.mod
% Single Track Model: 1skz.t06-w0.5.mod
% Single Track Model: 1yleA.t06-w0.5.mod
% Single Track Model: 1aep.t06-w0.5.mod
% Single Track Model: 1g3qA.t06-w0.5.mod
% Single Track Model: 1upvA.t06-w0.5.mod
% Single Track Model: 1m55A.t06-w0.5.mod
% Single Track Model: 2b1xA.t06-w0.5.mod
% Single Track Model: 1o7iA.t06-w0.5.mod
% Single Track Model: 1n93X.t06-w0.5.mod
% Single Track Model: 1tw9A.t06-w0.5.mod
% Single Track Model: 1pu1A.t06-w0.5.mod
% Single Track Model: 1yloA.t06-w0.5.mod
% Single Track Model: 1wc3A.t06-w0.5.mod
% Single Track Model: 1yqzA.t06-w0.5.mod
% Single Track Model: 1yrrA.t06-w0.5.mod
% Single Track Model: 1ow1A.t06-w0.5.mod
% Single Track Model: 2a6zA.t06-w0.5.mod
% Single Track Model: 1u34A.t06-w0.5.mod
% Single Track Model: 1e4yA.t06-w0.5.mod
% Single Track Model: 2cbp.t06-w0.5.mod
% Single Track Model: 1j58A.t06-w0.5.mod
% Single Track Model: 2a4aA.t06-w0.5.mod
% Single Track Model: 1qgdA.t06-w0.5.mod
% Single Track Model: 1tt8A.t06-w0.5.mod
% Single Track Model: 1hj0A.t06-w0.5.mod
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% Single Track Model: 1hywA.t06-w0.5.mod
% Single Track Model: 1k8qA.t06-w0.5.mod
% Single Track Model: 1fmhB.t06-w0.5.mod
% Single Track Model: 1q2lA.t06-w0.5.mod
% Single Track Model: 1amf.t06-w0.5.mod
% Single Track Model: 1yrkA.t06-w0.5.mod
% Single Track Model: 2d5xB.t06-w0.5.mod
% Single Track Model: 1xhnA.t06-w0.5.mod
% Single Track Model: 1rcwA.t06-w0.5.mod
% Single Track Model: 1ir21.t06-w0.5.mod
% Single Track Model: 2c4jA.t06-w0.5.mod
% Single Track Model: 1qj8A.t06-w0.5.mod
% Single Track Model: 2bnmA.t06-w0.5.mod
% Single Track Model: 1dm5A.t06-w0.5.mod
% Single Track Model: 1xezA.t06-w0.5.mod
% Single Track Model: 1bhdA.t06-w0.5.mod
% Single Track Model: 1shfA.t06-w0.5.mod
% Single Track Model: 1xsfA.t06-w0.5.mod
% Single Track Model: 1sgmA.t06-w0.5.mod
% Single Track Model: 1l4uA.t06-w0.5.mod
% Single Track Model: 1kjyB.t06-w0.5.mod
% Single Track Model: 1udkA.t06-w0.5.mod
% Single Track Model: 1g2cA.t06-w0.5.mod
% Single Track Model: 1dosA.t06-w0.5.mod
% Single Track Model: 2a50A.t06-w0.5.mod
% Single Track Model: 1dvpA.t06-w0.5.mod
% Single Track Model: 1iomA.t06-w0.5.mod
% Single Track Model: 1zlmA.t06-w0.5.mod
% Single Track Model: 1lhpA.t06-w0.5.mod
% Single Track Model: 2bnuA.t06-w0.5.mod
% Single Track Model: 1zx4A.t06-w0.5.mod
% Single Track Model: 1uixA.t06-w0.5.mod
% Single Track Model: 1q02A.t06-w0.5.mod
% Single Track Model: 2bptA.t06-w0.5.mod
% Single Track Model: 1tzzA.t06-w0.5.mod
% Single Track Model: 1qa5A.t06-w0.5.mod
% Single Track Model: 1ja9A.t06-w0.5.mod
% Single Track Model: 1ko3A.t06-w0.5.mod
% Single Track Model: 2auwA.t06-w0.5.mod
% Single Track Model: 1ur4A.t06-w0.5.mod
% Single Track Model: 1rie.t06-w0.5.mod
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% Single Track Model: 1xweA.t06-w0.5.mod
% Single Track Model: 1txpA.t06-w0.5.mod
% Single Track Model: 1em8B.t06-w0.5.mod
% Single Track Model: 1buoA.t06-w0.5.mod
% Single Track Model: 1b35C.t06-w0.5.mod
% Single Track Model: 1bebA.t06-w0.5.mod
% Single Track Model: 2h1tA.t06-w0.5.mod
% Single Track Model: 1pb1A.t06-w0.5.mod
% Single Track Model: 1m22A.t06-w0.5.mod
% Single Track Model: 2awfA.t06-w0.5.mod
% Single Track Model: 1v7bA.t06-w0.5.mod
% Single Track Model: 1hdiA.t06-w0.5.mod
% Single Track Model: 1pl5A.t06-w0.5.mod
% Single Track Model: 1k1vA.t06-w0.5.mod
% Single Track Model: 1erp.t06-w0.5.mod
% Single Track Model: 1vd5A.t06-w0.5.mod
% Single Track Model: 1um5L.t06-w0.5.mod
% Single Track Model: 1sr8A.t06-w0.5.mod
% Single Track Model: 1jeyA.t06-w0.5.mod
% Single Track Model: 2btoA.t06-w0.5.mod
% Single Track Model: 1f0xA.t06-w0.5.mod
% Single Track Model: 1scjB.t06-w0.5.mod
% Single Track Model: 1j1vA.t06-w0.5.mod
% Single Track Model: 1r69.t06-w0.5.mod
% Single Track Model: 1bt3A.t06-w0.5.mod
% Single Track Model: 1sn4A.t06-w0.5.mod
% Single Track Model: 2fu0A.t06-w0.5.mod
% Single Track Model: 1rmd.t06-w0.5.mod
% Single Track Model: 1yqhA.t06-w0.5.mod
% Single Track Model: 1r9cA.t06-w0.5.mod
% Single Track Model: 1a2xB.t06-w0.5.mod
% Single Track Model: 1nyoA.t06-w0.5.mod
% Single Track Model: 2ez6A.t06-w0.5.mod
% Single Track Model: 1tt0A.t06-w0.5.mod
% Single Track Model: 1qh5A.t06-w0.5.mod
% Single Track Model: 2cxkA.t06-w0.5.mod
% Single Track Model: 1uh5A.t06-w0.5.mod
% Single Track Model: 1hbwA.t06-w0.5.mod
% Single Track Model: 1v0wA.t06-w0.5.mod
% Single Track Model: 2bolA.t06-w0.5.mod
% Single Track Model: 1zvnA.t06-w0.5.mod
% Single Track Model: 1pjr.t06-w0.5.mod
% Single Track Model: 1sszA.t06-w0.5.mod
% Single Track Model: 1lc5A.t06-w0.5.mod
% Single Track Model: 1tzyA.t06-w0.5.mod
% Single Track Model: 1fjlA.t06-w0.5.mod
% Single Track Model: 1r5yA.t06-w0.5.mod
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% Single Track Model: 2c9qA.t06-w0.5.mod
% Single Track Model: 1xeqA.t06-w0.5.mod
% Single Track Model: 2bfdB.t06-w0.5.mod
% Single Track Model: 1xe1A.t06-w0.5.mod
% Single Track Model: 1uvqA.t06-w0.5.mod
% Single Track Model: 1wj5A.t06-w0.5.mod
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% Single Track Model: 1b3tA.t06-w0.5.mod
% Single Track Model: 1xg5A.t06-w0.5.mod
% Single Track Model: 1vm0A.t06-w0.5.mod
% Single Track Model: 1yxlA.t06-w0.5.mod
% Single Track Model: 1ga6A.t06-w0.5.mod
% Single Track Model: 2absA.t06-w0.5.mod
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% Single Track Model: 2cfaA.t06-w0.5.mod
% Single Track Model: 2ab0A.t06-w0.5.mod
% Single Track Model: 1wo6A.t06-w0.5.mod
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% Single Track Model: 1w6sB.t06-w0.5.mod
% Single Track Model: 2cohA.t06-w0.5.mod
% Single Track Model: 1ps1A.t06-w0.5.mod
% Single Track Model: 1quqA.t06-w0.5.mod
% Single Track Model: 2bmoB.t06-w0.5.mod
% Single Track Model: 1kfwA.t06-w0.5.mod
% Single Track Model: 1uarA.t06-w0.5.mod
% Single Track Model: 1ri5A.t06-w0.5.mod
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% Single Track Model: 1oewA.t06-w0.5.mod
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% Single Track Model: 1j0hA.t06-w0.5.mod
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% Single Track Model: 1o9iA.t06-w0.5.mod
% Single Track Model: 1ne9A.t06-w0.5.mod
% Single Track Model: 2bw0A.t06-w0.5.mod
% Single Track Model: 2aq2B.t06-w0.5.mod
% Single Track Model: 2ck3A.t06-w0.5.mod
% Single Track Model: 1pzqA.t06-w0.5.mod
% Single Track Model: 3proC.t06-w0.5.mod
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% Single Track Model: 1v7rA.t06-w0.5.mod
% Single Track Model: 1ujpA.t06-w0.5.mod
% Single Track Model: 1q4uA.t06-w0.5.mod
% Single Track Model: 1xdzA.t06-w0.5.mod
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% Single Track Model: 1du1A.t06-w0.5.mod
% Single Track Model: 2b59B.t06-w0.5.mod
% Single Track Model: 1hznA.t06-w0.5.mod
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% Single Track Model: 1cmcA.t06-w0.5.mod
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% Single Track Model: 1uldA.t06-w0.5.mod
% Single Track Model: 1z47A.t06-w0.5.mod
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% Single Track Model: 1ufyA.t06-w0.5.mod
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% Single Track Model: 1nw3A.t06-w0.5.mod
% Single Track Model: 1ly2A.t06-w0.5.mod
% Single Track Model: 1mk0A.t06-w0.5.mod
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% Single Track Model: 1x9mA.t06-w0.5.mod
% Single Track Model: 1rewA.t06-w0.5.mod
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% Single Track Model: 1whbA.t06-w0.5.mod
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% Single Track Model: 1yvcA.t06-w0.5.mod
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% Single Track Model: 1ter.t06-w0.5.mod
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% Single Track Model: 1f39A.t06-w0.5.mod
% Single Track Model: 1pyfA.t06-w0.5.mod
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% Single Track Model: 1yrtA.t06-w0.5.mod
% Single Track Model: 1ql0A.t06-w0.5.mod
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% Single Track Model: 1uqtA.t06-w0.5.mod
% Single Track Model: 1thx.t06-w0.5.mod
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% Single Track Model: 1wwuA.t06-w0.5.mod
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% Single Track Model: 1vqoA.t06-w0.5.mod
% Single Track Model: 2ahrA.t06-w0.5.mod
% Single Track Model: 1u5xA.t06-w0.5.mod
% Single Track Model: 1nrjA.t06-w0.5.mod
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% Single Track Model: 1yn4A.t06-w0.5.mod
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% Single Track Model: 1uzpA.t06-w0.5.mod
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% Single Track Model: 1is3A.t06-w0.5.mod
% Single Track Model: 1yhtA.t06-w0.5.mod
% Single Track Model: 1gvnB.t06-w0.5.mod
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% Single Track Model: 1ecfA.t06-w0.5.mod
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% Single Track Model: 1dq3A.t06-w0.5.mod
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% Single Track Model: 2a10A.t06-w0.5.mod
% Single Track Model: 1ow4A.t06-w0.5.mod
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% Single Track Model: 1fljA.t06-w0.5.mod
% Single Track Model: 2fwtA.t06-w0.5.mod
% Single Track Model: 2cwlA.t06-w0.5.mod
% Single Track Model: 2bokL.t06-w0.5.mod
% Single Track Model: 1r6uA.t06-w0.5.mod
% Single Track Model: 1zzoA.t06-w0.5.mod
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% Single Track Model: 1u4qA.t06-w0.5.mod
% Single Track Model: 1nm8A.t06-w0.5.mod
% Single Track Model: 1klo.t06-w0.5.mod
% Single Track Model: 1mj5A.t06-w0.5.mod
% Single Track Model: 1uuqA.t06-w0.5.mod
% Single Track Model: 2act.t06-w0.5.mod
% Single Track Model: 1vqoI.t06-w0.5.mod
% Single Track Model: 1q8bA.t06-w0.5.mod
% Single Track Model: 2bo4A.t06-w0.5.mod
% Single Track Model: 1vqoR.t06-w0.5.mod
% Single Track Model: 1hlb.t06-w0.5.mod
% Single Track Model: 2ab9A.t06-w0.5.mod
% Single Track Model: 1jw2A.t06-w0.5.mod
% Single Track Model: 1r6dA.t06-w0.5.mod
% Single Track Model: 1w4tA.t06-w0.5.mod
% Single Track Model: 1lu8A.t06-w0.5.mod
% Single Track Model: 1l2pA.t06-w0.5.mod
% Single Track Model: 2b6nA.t06-w0.5.mod
% Single Track Model: 2sak.t06-w0.5.mod
% Single Track Model: 2g38A.t06-w0.5.mod
% Single Track Model: 1zmeC.t06-w0.5.mod
% Single Track Model: 1xd3A.t06-w0.5.mod
% Single Track Model: 2fsjA.t06-w0.5.mod
% Single Track Model: 1npyA.t06-w0.5.mod
% Single Track Model: 1wmiB.t06-w0.5.mod
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% Single Track Model: 1n5gA.t06-w0.5.mod
% Single Track Model: 1uz8B.t06-w0.5.mod
% Single Track Model: 1tbuA.t06-w0.5.mod
% Single Track Model: 1wy1A.t06-w0.5.mod
% Single Track Model: 2ct7A.t06-w0.5.mod
% Single Track Model: 1xovA.t06-w0.5.mod
% Single Track Model: 1o69A.t06-w0.5.mod
% Single Track Model: 1vyfA.t06-w0.5.mod
% Single Track Model: 1mwpA.t06-w0.5.mod
% Single Track Model: 1c7kA.t06-w0.5.mod
% Single Track Model: 1jyoE.t06-w0.5.mod
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% Single Track Model: 1kicA.t06-w0.5.mod
% Single Track Model: 1zi8A.t06-w0.5.mod
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% Single Track Model: 1d5rA.t06-w0.5.mod
% Single Track Model: 2cw5A.t06-w0.5.mod
% Single Track Model: 1m7kA.t06-w0.5.mod
% Single Track Model: 1svpA.t06-w0.5.mod
% Single Track Model: 2bneA.t06-w0.5.mod
% Single Track Model: 2a2mA.t06-w0.5.mod
% Single Track Model: 1uqrA.t06-w0.5.mod
% Single Track Model: 1thg.t06-w0.5.mod
% Single Track Model: 1gx1A.t06-w0.5.mod
% Single Track Model: 1mj4A.t06-w0.5.mod
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% Single Track Model: 1dceA.t06-w0.5.mod
% Single Track Model: 2aliA.t06-w0.5.mod
% Single Track Model: 1eejA.t06-w0.5.mod
% Single Track Model: 1y29A.t06-w0.5.mod
% Single Track Model: 2bmeA.t06-w0.5.mod
% Single Track Model: 1ozsB.t06-w0.5.mod
% Single Track Model: 1avaC.t06-w0.5.mod
% Single Track Model: 3tdt.t06-w0.5.mod
% Single Track Model: 1y10A.t06-w0.5.mod
% Single Track Model: 1uyjA.t06-w0.5.mod
% Single Track Model: 1exrA.t06-w0.5.mod
% Single Track Model: 1r2qA.t06-w0.5.mod
% Single Track Model: 1o0sA.t06-w0.5.mod
% Single Track Model: 1l1eA.t06-w0.5.mod
% Single Track Model: 1h09A.t06-w0.5.mod
% Single Track Model: 1dkcA.t06-w0.5.mod
% Single Track Model: 1h5qA.t06-w0.5.mod
% Single Track Model: 1tyv.t06-w0.5.mod
% Single Track Model: 2a4hA.t06-w0.5.mod
% Single Track Model: 1v54H.t06-w0.5.mod
% Single Track Model: 1a3c.t06-w0.5.mod
% Single Track Model: 1a8y.t06-w0.5.mod
% Single Track Model: 2c36A.t06-w0.5.mod
% Single Track Model: 1x3kA.t06-w0.5.mod
% Single Track Model: 1s98A.t06-w0.5.mod
% Single Track Model: 1gr0A.t06-w0.5.mod
% Single Track Model: 1g5bA.t06-w0.5.mod
% Single Track Model: 1f53A.t06-w0.5.mod
% Single Track Model: 1bx4A.t06-w0.5.mod
% Single Track Model: 2ctuA.t06-w0.5.mod
% Single Track Model: 1z98A.t06-w0.5.mod
% Single Track Model: 1j05B.t06-w0.5.mod
% Single Track Model: 1qc7A.t06-w0.5.mod
% Single Track Model: 1twfF.t06-w0.5.mod
% Single Track Model: 1m4rA.t06-w0.5.mod
% Single Track Model: 1zjkA.t06-w0.5.mod
% Single Track Model: 1zkiA.t06-w0.5.mod
% Single Track Model: 1ydlA.t06-w0.5.mod
% Single Track Model: 1l8dA.t06-w0.5.mod
% Single Track Model: 1lshB.t06-w0.5.mod
% Single Track Model: 2b2aA.t06-w0.5.mod
% Single Track Model: 1nxuA.t06-w0.5.mod
% Single Track Model: 1lf7A.t06-w0.5.mod
% Single Track Model: 1ew0A.t06-w0.5.mod
% Single Track Model: 1g38A.t06-w0.5.mod
% Single Track Model: 2dri.t06-w0.5.mod
% Single Track Model: 1t3qB.t06-w0.5.mod
% Single Track Model: 1sfuA.t06-w0.5.mod
% Single Track Model: 2c43A.t06-w0.5.mod
% Single Track Model: 1bwwA.t06-w0.5.mod
% Single Track Model: 1ym3A.t06-w0.5.mod
% Single Track Model: 1r4pB.t06-w0.5.mod
% Single Track Model: 1p77A.t06-w0.5.mod
% Single Track Model: 1qxfA.t06-w0.5.mod
% Single Track Model: 1f6vA.t06-w0.5.mod
% Single Track Model: 1amx.t06-w0.5.mod
% Single Track Model: 2gsq.t06-w0.5.mod
% Single Track Model: 1s7iA.t06-w0.5.mod
% Single Track Model: 2azjA.t06-w0.5.mod
% Single Track Model: 2aw43.t06-w0.5.mod
% Single Track Model: 1yqyA.t06-w0.5.mod
% Single Track Model: 1dypA.t06-w0.5.mod
% Single Track Model: 2a84A.t06-w0.5.mod
% Single Track Model: 1t5bA.t06-w0.5.mod
% Single Track Model: 2b61A.t06-w0.5.mod
% Single Track Model: 1mxeE.t06-w0.5.mod
% Single Track Model: 2atzA.t06-w0.5.mod
% Single Track Model: 1kq6A.t06-w0.5.mod
% Single Track Model: 1yqvL.t06-w0.5.mod
% Single Track Model: 1knb.t06-w0.5.mod
% Single Track Model: 1w9aA.t06-w0.5.mod
% Single Track Model: 1r6xA.t06-w0.5.mod
% Single Track Model: 1kilE.t06-w0.5.mod
% Single Track Model: 3sdhA.t06-w0.5.mod
% Single Track Model: 1z6uA.t06-w0.5.mod
% Single Track Model: 1x9uA.t06-w0.5.mod
% Single Track Model: 1qr0A.t06-w0.5.mod
% Single Track Model: 1nepA.t06-w0.5.mod
% Single Track Model: 1wu9A.t06-w0.5.mod
% Single Track Model: 2g7jA.t06-w0.5.mod
% Single Track Model: 1w41A.t06-w0.5.mod
% Single Track Model: 1u60A.t06-w0.5.mod
% Single Track Model: 1ayx.t06-w0.5.mod
% Single Track Model: 1rh6A.t06-w0.5.mod
% Single Track Model: 1cqtI.t06-w0.5.mod
% Single Track Model: 1xcbA.t06-w0.5.mod
% Single Track Model: 1uheA.t06-w0.5.mod
% Single Track Model: 1wfwA.t06-w0.5.mod
% Single Track Model: 2bpqA.t06-w0.5.mod
% Single Track Model: 1z54A.t06-w0.5.mod
% Single Track Model: 1x93A.t06-w0.5.mod
% Single Track Model: 2c5kT.t06-w0.5.mod
% Single Track Model: 1dkuA.t06-w0.5.mod
% Single Track Model: 1q32A.t06-w0.5.mod
% Single Track Model: 1o9wA.t06-w0.5.mod
% Single Track Model: 1sviA.t06-w0.5.mod
% Single Track Model: 1ku3A.t06-w0.5.mod
% Single Track Model: 1g4fA.t06-w0.5.mod
% Single Track Model: 1mkyA.t06-w0.5.mod
% Single Track Model: 1dpe.t06-w0.5.mod
% Single Track Model: 1fr2A.t06-w0.5.mod
% Single Track Model: 1fviA.t06-w0.5.mod
% Single Track Model: 1yy7A.t06-w0.5.mod
% Single Track Model: 1y07A.t06-w0.5.mod
% Single Track Model: 1weyA.t06-w0.5.mod
% Single Track Model: 1gesA.t06-w0.5.mod
% Single Track Model: 2cqeA.t06-w0.5.mod
% Single Track Model: 1gveA.t06-w0.5.mod
% Single Track Model: 1j1qA.t06-w0.5.mod
% Single Track Model: 1iwcA.t06-w0.5.mod
% Single Track Model: 2bjuA.t06-w0.5.mod
% Single Track Model: 1e5rA.t06-w0.5.mod
% Single Track Model: 1rtu.t06-w0.5.mod
% Single Track Model: 1rgzA.t06-w0.5.mod
% Single Track Model: 2a5jA.t06-w0.5.mod
% Single Track Model: 2bk9A.t06-w0.5.mod
% Single Track Model: 1k8kF.t06-w0.5.mod
% Single Track Model: 1n6zA.t06-w0.5.mod
% Single Track Model: 1iwdA.t06-w0.5.mod
% Single Track Model: 1k92A.t06-w0.5.mod
% Single Track Model: 1t0fA.t06-w0.5.mod
% Single Track Model: 1sfe.t06-w0.5.mod
% Single Track Model: 1pmy.t06-w0.5.mod
% Single Track Model: 1e0bA.t06-w0.5.mod
% Single Track Model: 1pkhA.t06-w0.5.mod
% Single Track Model: 1fxd.t06-w0.5.mod
% Single Track Model: 1xg0A.t06-w0.5.mod
% Single Track Model: 1moxC.t06-w0.5.mod
% Single Track Model: 1gox.t06-w0.5.mod
% Single Track Model: 1gadO.t06-w0.5.mod
% Single Track Model: 1uadC.t06-w0.5.mod
% Single Track Model: 1vbwA.t06-w0.5.mod
% Single Track Model: 1lpvA.t06-w0.5.mod
% Single Track Model: 1ogsA.t06-w0.5.mod
% Single Track Model: 1q7lB.t06-w0.5.mod
% Single Track Model: 8fabB.t06-w0.5.mod
% Single Track Model: 1s95A.t06-w0.5.mod
% Single Track Model: 1yphE.t06-w0.5.mod
% Single Track Model: 2ct9A.t06-w0.5.mod
% Single Track Model: 2dcnA.t06-w0.5.mod
% Single Track Model: 1uzmA.t06-w0.5.mod
% Single Track Model: 1qazA.t06-w0.5.mod
% Single Track Model: 2cmuA.t06-w0.5.mod
% Single Track Model: 2alaA.t06-w0.5.mod
% Single Track Model: 1gnkA.t06-w0.5.mod
% Single Track Model: 1z72A.t06-w0.5.mod
% Single Track Model: 1pkoA.t06-w0.5.mod
% Single Track Model: 1nbaA.t06-w0.5.mod
% Single Track Model: 1x7yB.t06-w0.5.mod
% Single Track Model: 2af6A.t06-w0.5.mod
% Single Track Model: 1f08A.t06-w0.5.mod
% Single Track Model: 1vkeA.t06-w0.5.mod
% Single Track Model: 1kveA.t06-w0.5.mod
% Single Track Model: 1qyrA.t06-w0.5.mod
% Single Track Model: 1rh4.t06-w0.5.mod
% Single Track Model: 1knqA.t06-w0.5.mod
% Single Track Model: 1g92A.t06-w0.5.mod
% Single Track Model: 2fauA.t06-w0.5.mod
% Single Track Model: 2cs8A.t06-w0.5.mod
% Single Track Model: 2b34A.t06-w0.5.mod
% Single Track Model: 1o7zA.t06-w0.5.mod
% Single Track Model: 1jh3A.t06-w0.5.mod
% Single Track Model: 1kapP.t06-w0.5.mod
% Single Track Model: 1pgs.t06-w0.5.mod
% Single Track Model: 1r1a1.t06-w0.5.mod
% Single Track Model: 1r0rE.t06-w0.5.mod
% Single Track Model: 1js8A.t06-w0.5.mod
% Single Track Model: 2ayh.t06-w0.5.mod
% Single Track Model: 1z83A.t06-w0.5.mod
% Single Track Model: 1rzsA.t06-w0.5.mod
% Single Track Model: 1ee8A.t06-w0.5.mod
% Single Track Model: 2arzA.t06-w0.5.mod
% Single Track Model: 1n46A.t06-w0.5.mod
% Single Track Model: 1imjA.t06-w0.5.mod
% Single Track Model: 1wjpA.t06-w0.5.mod
% Single Track Model: 1k07A.t06-w0.5.mod
% Single Track Model: 1avwB.t06-w0.5.mod
% Single Track Model: 2aotA.t06-w0.5.mod
% Single Track Model: 1meoA.t06-w0.5.mod
% Single Track Model: 1n7kA.t06-w0.5.mod
% Single Track Model: 1k9uA.t06-w0.5.mod
% Single Track Model: 1vyiA.t06-w0.5.mod
% Single Track Model: 1wmxA.t06-w0.5.mod
% Single Track Model: 1kewA.t06-w0.5.mod
% Single Track Model: 1mvlA.t06-w0.5.mod
% Single Track Model: 1bx1A.t06-w0.5.mod
% Single Track Model: 1y7wA.t06-w0.5.mod
% Single Track Model: 1x59A.t06-w0.5.mod
% Single Track Model: 1vcvA.t06-w0.5.mod
% Single Track Model: 1g9oA.t06-w0.5.mod
% Single Track Model: 1b8dA.t06-w0.5.mod
% Single Track Model: 1mnaA.t06-w0.5.mod
% Single Track Model: 1z1nX.t06-w0.5.mod
% Single Track Model: 1bxvA.t06-w0.5.mod
% Single Track Model: 1zvyA.t06-w0.5.mod
% Single Track Model: 2f0aA.t06-w0.5.mod
% Single Track Model: 1wgxA.t06-w0.5.mod
% Single Track Model: 1s1fA.t06-w0.5.mod
% Single Track Model: 2aghC.t06-w0.5.mod
% Single Track Model: 3bamA.t06-w0.5.mod
% Single Track Model: 2auhB.t06-w0.5.mod
% Single Track Model: 1kwaA.t06-w0.5.mod
% Single Track Model: 1gpjA.t06-w0.5.mod
% Single Track Model: 2c55A.t06-w0.5.mod
% Single Track Model: 1qb2A.t06-w0.5.mod
% Single Track Model: 2bjqA.t06-w0.5.mod
% Single Track Model: 1iro.t06-w0.5.mod
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% Single Track Model: 1e3dA.t06-w0.5.mod
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% Single Track Model: 1yt8A.t06-w0.5.mod
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% Single Track Model: 1t0iA.t06-w0.5.mod
% Single Track Model: 1rypA.t06-w0.5.mod
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% Single Track Model: 4dpvZ.t06-w0.5.mod
% Single Track Model: 1mwwA.t06-w0.5.mod
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% Single Track Model: 1vbkA.t06-w0.5.mod
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% Single Track Model: 1kbvA.t06-w0.5.mod
% Single Track Model: 1bob.t06-w0.5.mod
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% Single Track Model: 1i27A.t06-w0.5.mod
% Single Track Model: 1w36B.t06-w0.5.mod
% Single Track Model: 1p94A.t06-w0.5.mod
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% Single Track Model: 1t0cA.t06-w0.5.mod
% Single Track Model: 2etvA.t06-w0.5.mod
% Single Track Model: 1kb9H.t06-w0.5.mod
% Single Track Model: 1qsaA.t06-w0.5.mod
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% Single Track Model: 1r5sA.t06-w0.5.mod
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% Single Track Model: 1z3xA.t06-w0.5.mod
% Single Track Model: 1yueA.t06-w0.5.mod
% Single Track Model: 2a5yB.t06-w0.5.mod
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% Single Track Model: 1repC.t06-w0.5.mod
% Single Track Model: 1w5fA.t06-w0.5.mod
% Single Track Model: 1lzjA.t06-w0.5.mod
% Single Track Model: 1yj7A.t06-w0.5.mod
% Single Track Model: 1sbzA.t06-w0.5.mod
% Single Track Model: 1lugA.t06-w0.5.mod
% Single Track Model: 1vfsA.t06-w0.5.mod
% Single Track Model: 1nznA.t06-w0.5.mod
% Single Track Model: 1cnt1.t06-w0.5.mod
% Single Track Model: 1vr7A.t06-w0.5.mod
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% Single Track Model: 1t1gA.t06-w0.5.mod
% Single Track Model: 2c31A.t06-w0.5.mod
% Single Track Model: 1kutA.t06-w0.5.mod
% Single Track Model: 1nkiA.t06-w0.5.mod
% Single Track Model: 1rv9A.t06-w0.5.mod
% Single Track Model: 1lvoA.t06-w0.5.mod
% Single Track Model: 2g0qA.t06-w0.5.mod
% Single Track Model: 1jsdB.t06-w0.5.mod
% Single Track Model: 1zchA.t06-w0.5.mod
% Single Track Model: 1h9mA.t06-w0.5.mod
% Single Track Model: 1zruA.t06-w0.5.mod
% Single Track Model: 2fdrA.t06-w0.5.mod
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% Single Track Model: 1vajA.t06-w0.5.mod
% Single Track Model: 1rjuV.t06-w0.5.mod
% Single Track Model: 1pufA.t06-w0.5.mod
% Single Track Model: 1shyB.t06-w0.5.mod
% Single Track Model: 1mdaH.t06-w0.5.mod
% Single Track Model: 1npiA.t06-w0.5.mod
% Single Track Model: 1vk9A.t06-w0.5.mod
% Single Track Model: 1lr0A.t06-w0.5.mod
% Single Track Model: 2afwA.t06-w0.5.mod
% Single Track Model: 1tn6A.t06-w0.5.mod
% Single Track Model: 2f7tA.t06-w0.5.mod
% Single Track Model: 1wo3A.t06-w0.5.mod
% Single Track Model: 1rsoA.t06-w0.5.mod
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% Single Track Model: 1k0eA.t06-w0.5.mod
% Single Track Model: 1whmA.t06-w0.5.mod
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% Single Track Model: 1gxqA.t06-w0.5.mod
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% Single Track Model: 1jsmA.t06-w0.5.mod
% Single Track Model: 2mprA.t06-w0.5.mod
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% Single Track Model: 1u9aA.t06-w0.5.mod
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% Single Track Model: 2gxfA.t06-w0.5.mod
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% Single Track Model: 1u7gA.t06-w0.5.mod
% Single Track Model: 1wzvA.t06-w0.5.mod
% Single Track Model: 1j93A.t06-w0.5.mod
% Single Track Model: 1xvhA.t06-w0.5.mod
% Single Track Model: 1t0aA.t06-w0.5.mod
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% Single Track Model: 1bb8.t06-w0.5.mod
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% Single Track Model: 1yr1A.t06-w0.5.mod
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% Single Track Model: 1ri6A.t06-w0.5.mod
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% Single Track Model: 2abwA.t06-w0.5.mod
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% Single Track Model: 2gfnA.t06-w0.5.mod
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% Single Track Model: 1ton.t06-w0.5.mod
% Single Track Model: 1ti5A.t06-w0.5.mod
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% Single Track Model: 1ig8A.t06-w0.5.mod
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% Single Track Model: 1iktA.t06-w0.5.mod
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% Single Track Model: 1s0pA.t06-w0.5.mod
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% Single Track Model: 1aly.t06-w0.5.mod
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% Single Track Model: 1fh9A.t06-w0.5.mod
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% Single Track Model: 2as0A.t06-w0.5.mod
% Single Track Model: 1lu0A.t06-w0.5.mod
% Single Track Model: 1mc2A.t06-w0.5.mod
% Single Track Model: 1y9iA.t06-w0.5.mod
% Single Track Model: 2evwX.t06-w0.5.mod
% Single Track Model: 1e3dB.t06-w0.5.mod
% Single Track Model: 1flmA.t06-w0.5.mod
% Single Track Model: 2fl4A.t06-w0.5.mod
% Single Track Model: 1uhnA.t06-w0.5.mod
% Single Track Model: 1unqA.t06-w0.5.mod
% Single Track Model: 1ra6A.t06-w0.5.mod
% Single Track Model: 1dpgA.t06-w0.5.mod
% Single Track Model: 1tzpA.t06-w0.5.mod
% Single Track Model: 2bcjB.t06-w0.5.mod
% Single Track Model: 1yd7A.t06-w0.5.mod
% Single Track Model: 1gk8A.t06-w0.5.mod
% Single Track Model: 2b4yA.t06-w0.5.mod
% Single Track Model: 1ux6A.t06-w0.5.mod
% Single Track Model: 1yuiA.t06-w0.5.mod
% Single Track Model: 1nt2B.t06-w0.5.mod
% Single Track Model: 1n4qB.t06-w0.5.mod
% Single Track Model: 1kveB.t06-w0.5.mod
% Single Track Model: 2anyA.t06-w0.5.mod
% Single Track Model: 1khoA.t06-w0.5.mod
% Single Track Model: 2g0wA.t06-w0.5.mod
% Single Track Model: 1qwkA.t06-w0.5.mod
% Single Track Model: 1h9hI.t06-w0.5.mod
% Single Track Model: 2bswA.t06-w0.5.mod
% Single Track Model: 1fr3A.t06-w0.5.mod
% Single Track Model: 1hz4A.t06-w0.5.mod
% Single Track Model: 1lkkA.t06-w0.5.mod
% Single Track Model: 1n1xA.t06-w0.5.mod
% Single Track Model: 2aeeA.t06-w0.5.mod
% Single Track Model: 1hu3A.t06-w0.5.mod
% Single Track Model: 1epuA.t06-w0.5.mod
% Single Track Model: 1aj8A.t06-w0.5.mod
% Single Track Model: 1ksoA.t06-w0.5.mod
% Single Track Model: 1gmlA.t06-w0.5.mod
% Single Track Model: 1yzxA.t06-w0.5.mod
% Single Track Model: 1sw6A.t06-w0.5.mod
% Single Track Model: 1rc9A.t06-w0.5.mod
% Single Track Model: 1r6oC.t06-w0.5.mod
% Single Track Model: 2etgA.t06-w0.5.mod
% Single Track Model: 1reqB.t06-w0.5.mod
% Single Track Model: 2g9iA.t06-w0.5.mod
% Single Track Model: 1ytaA.t06-w0.5.mod
% Single Track Model: 1zw0A.t06-w0.5.mod
% Single Track Model: 1kw3B.t06-w0.5.mod
% Single Track Model: 1z6bA.t06-w0.5.mod
% Single Track Model: 1gvnA.t06-w0.5.mod
% Single Track Model: 1ag7.t06-w0.5.mod
% Single Track Model: 1yaxA.t06-w0.5.mod
% Single Track Model: 1mkmA.t06-w0.5.mod
% Single Track Model: 1fas.t06-w0.5.mod
% Single Track Model: 1eemA.t06-w0.5.mod
% Single Track Model: 1a8l.t06-w0.5.mod
% Single Track Model: 1yoaA.t06-w0.5.mod
% Single Track Model: 1oi2A.t06-w0.5.mod
% Single Track Model: 1gtzA.t06-w0.5.mod
% Single Track Model: 2br9A.t06-w0.5.mod
% Single Track Model: 1lghA.t06-w0.5.mod
% Single Track Model: 1b6a.t06-w0.5.mod
% Single Track Model: 1kuuA.t06-w0.5.mod
% Single Track Model: 1sdoA.t06-w0.5.mod
% Single Track Model: 1j09A.t06-w0.5.mod
% Single Track Model: 3vub.t06-w0.5.mod
% Single Track Model: 1smbA.t06-w0.5.mod
% Single Track Model: 1xeeA.t06-w0.5.mod
% Single Track Model: 1t82A.t06-w0.5.mod
% Single Track Model: 1h8eH.t06-w0.5.mod
% Single Track Model: 1wohA.t06-w0.5.mod
% Single Track Model: 2bcgY.t06-w0.5.mod
% Single Track Model: 1pmhX.t06-w0.5.mod
% Single Track Model: 1yv4A.t06-w0.5.mod
% Single Track Model: 4sgbI.t06-w0.5.mod
% Single Track Model: 1krhA.t06-w0.5.mod
% Single Track Model: 1fm0D.t06-w0.5.mod
% Single Track Model: 1oksA.t06-w0.5.mod
% Single Track Model: 2fd4A.t06-w0.5.mod
% Single Track Model: 2aqjA.t06-w0.5.mod
% Single Track Model: 1udc.t06-w0.5.mod
% Single Track Model: 4tsvA.t06-w0.5.mod
% Single Track Model: 1vc3B.t06-w0.5.mod
% Single Track Model: 1bah.t06-w0.5.mod
% Single Track Model: 1o7eA.t06-w0.5.mod
% Single Track Model: 1i5nA.t06-w0.5.mod
% Single Track Model: 1y8oB.t06-w0.5.mod
% Single Track Model: 1v05A.t06-w0.5.mod
% Single Track Model: 2arcA.t06-w0.5.mod
% Single Track Model: 1tueA.t06-w0.5.mod
% Single Track Model: 2fk9A.t06-w0.5.mod
% Single Track Model: 2ae5B.t06-w0.5.mod
% Single Track Model: 1nfp.t06-w0.5.mod
% Single Track Model: 1t7lA.t06-w0.5.mod
% Single Track Model: 1vqoQ.t06-w0.5.mod
% Single Track Model: 1pwxA.t06-w0.5.mod
% Single Track Model: 1zxtA.t06-w0.5.mod
% Single Track Model: 1ljoA.t06-w0.5.mod
% Single Track Model: 1cmr.t06-w0.5.mod
% Single Track Model: 1ja1A.t06-w0.5.mod
% Single Track Model: 1za8A.t06-w0.5.mod
% Single Track Model: 1iseA.t06-w0.5.mod
% Single Track Model: 1eo6A.t06-w0.5.mod
% Single Track Model: 1p4fA.t06-w0.5.mod
% Single Track Model: 1gd7A.t06-w0.5.mod
% Single Track Model: 1b56.t06-w0.5.mod
% Single Track Model: 1wa7B.t06-w0.5.mod
% Single Track Model: 2c6yA.t06-w0.5.mod
% Single Track Model: 2fulA.t06-w0.5.mod
% Single Track Model: 3tss.t06-w0.5.mod
% Single Track Model: 1ww9A.t06-w0.5.mod
% Single Track Model: 1idaA.t06-w0.5.mod
% Single Track Model: 1q77A.t06-w0.5.mod
% Single Track Model: 1m2dA.t06-w0.5.mod
% Single Track Model: 2g64A.t06-w0.5.mod
% Single Track Model: 1m7gA.t06-w0.5.mod
% Single Track Model: 2bjiA.t06-w0.5.mod
% Single Track Model: 2hrvA.t06-w0.5.mod
% Single Track Model: 1ytrA.t06-w0.5.mod
% Single Track Model: 1k5kA.t06-w0.5.mod
% Single Track Model: 1ru4A.t06-w0.5.mod
% Single Track Model: 1igqA.t06-w0.5.mod
% Single Track Model: 1mkcA.t06-w0.5.mod
% Single Track Model: 1ggzA.t06-w0.5.mod
% Single Track Model: 6ldh.t06-w0.5.mod
% Single Track Model: 1w70A.t06-w0.5.mod
% Single Track Model: 1i24A.t06-w0.5.mod
% Single Track Model: 1kozA.t06-w0.5.mod
% Single Track Model: 1qnrA.t06-w0.5.mod
% Single Track Model: 1qfxA.t06-w0.5.mod
% Single Track Model: 1n82A.t06-w0.5.mod
% Single Track Model: 3pviA.t06-w0.5.mod
% Single Track Model: 1l1dA.t06-w0.5.mod
% Single Track Model: 1fu9A.t06-w0.5.mod
% Single Track Model: 1sh8A.t06-w0.5.mod
% Single Track Model: 1vqo3.t06-w0.5.mod
% Single Track Model: 1wqwA.t06-w0.5.mod
% Single Track Model: 1n0wA.t06-w0.5.mod
% Single Track Model: 2apoA.t06-w0.5.mod
% Single Track Model: 1l3eB.t06-w0.5.mod
% Single Track Model: 1xknA.t06-w0.5.mod
% Single Track Model: 1dmuA.t06-w0.5.mod
% Single Track Model: 2f4wA.t06-w0.5.mod
% Single Track Model: 1aozA.t06-w0.5.mod
% Single Track Model: 1n7hA.t06-w0.5.mod
% Single Track Model: 1wz9A.t06-w0.5.mod
% Single Track Model: 1va0A.t06-w0.5.mod
% Single Track Model: 1y7xA.t06-w0.5.mod
% Single Track Model: 1rh9A.t06-w0.5.mod
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% Single Track Model: 1ybxA.t06-w0.5.mod
% Single Track Model: 1jvwA.t06-w0.5.mod
% Single Track Model: 1i6lA.t06-w0.5.mod
% Single Track Model: 2a90A.t06-w0.5.mod
% Single Track Model: 1fp1D.t06-w0.5.mod
% Single Track Model: 1vj7A.t06-w0.5.mod
% Single Track Model: 2fkkA.t06-w0.5.mod
% Single Track Model: 2fhqA.t06-w0.5.mod
% Single Track Model: 2cs2A.t06-w0.5.mod
% Single Track Model: 1yizA.t06-w0.5.mod
% Single Track Model: 2bbmB.t06-w0.5.mod
% Single Track Model: 1dun.t06-w0.5.mod
% Single Track Model: 5rubA.t06-w0.5.mod
% Single Track Model: 1w8xP.t06-w0.5.mod
% Single Track Model: 1jk8B.t06-w0.5.mod
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% Single Track Model: 1a8rA.t06-w0.5.mod
% Single Track Model: 2gf4A.t06-w0.5.mod
% Single Track Model: 1bomB.t06-w0.5.mod
% Single Track Model: 1ymqA.t06-w0.5.mod
% Single Track Model: 1pk6C.t06-w0.5.mod
% Single Track Model: 1zj6A.t06-w0.5.mod
% Single Track Model: 1z9tA.t06-w0.5.mod
% Single Track Model: 2f5tX.t06-w0.5.mod
% Single Track Model: 2ajuH.t06-w0.5.mod
% Single Track Model: 1s5lX.t06-w0.5.mod
% Single Track Model: 1g03A.t06-w0.5.mod
% Single Track Model: 1qfgA.t06-w0.5.mod
% Single Track Model: 1qu1A.t06-w0.5.mod
% Single Track Model: 1kmxA.t06-w0.5.mod
% Single Track Model: 1bzkA.t06-w0.5.mod
% Single Track Model: 1meqA.t06-w0.5.mod
% Single Track Model: 1ijaA.t06-w0.5.mod
% Single Track Model: 1t6eX.t06-w0.5.mod
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% Single Track Model: 1nmoA.t06-w0.5.mod
% Single Track Model: 1o08A.t06-w0.5.mod
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% Single Track Model: 1jbeA.t06-w0.5.mod
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% Single Track Model: 1u2wA.t06-w0.5.mod
% Single Track Model: 1ci9A.t06-w0.5.mod
% Single Track Model: 1irzA.t06-w0.5.mod
% Single Track Model: 2fikA.t06-w0.5.mod
% Single Track Model: 1jwqA.t06-w0.5.mod
% Single Track Model: 1fxkB.t06-w0.5.mod
% Single Track Model: 1e1oA.t06-w0.5.mod
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% Single Track Model: 2bidA.t06-w0.5.mod
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% Single Track Model: 1ej6B.t06-w0.5.mod
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% Single Track Model: 1erd.t06-w0.5.mod
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% Single Track Model: 1at0.t06-w0.5.mod
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% Single Track Model: 1eerB.t06-w0.5.mod
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% Single Track Model: 1tlyA.t06-w0.5.mod
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% Single Track Model: 1uthA.t06-w0.5.mod
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% Single Track Model: 1dokA.t06-w0.5.mod
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% Single Track Model: 1y03A.t06-w0.5.mod
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% Single Track Model: 1se7A.t06-w0.5.mod
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% Single Track Model: 1ydwA.t06-w0.5.mod
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% Single Track Model: 1ep3A.t06-w0.5.mod
% Single Track Model: 1nvmB.t06-w0.5.mod
% Single Track Model: 1mwqA.t06-w0.5.mod
% Single Track Model: 1ws0A.t06-w0.5.mod
% Single Track Model: 1gen.t06-w0.5.mod
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% Single Track Model: 1tg0A.t06-w0.5.mod
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% Single Track Model: 2evrA.t06-w0.5.mod
% Single Track Model: 1xiwA.t06-w0.5.mod
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% Single Track Model: 1no4A.t06-w0.5.mod
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% Single Track Model: 1scy.t06-w0.5.mod
% Single Track Model: 1ixkA.t06-w0.5.mod
% Single Track Model: 1e44B.t06-w0.5.mod
% Single Track Model: 1hm9A.t06-w0.5.mod
% Single Track Model: 1uxjA.t06-w0.5.mod
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% Single Track Model: 2acaA.t06-w0.5.mod
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% Single Track Model: 2cybA.t06-w0.5.mod
% Single Track Model: 1ejpA.t06-w0.5.mod
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% Single Track Model: 1dw0A.t06-w0.5.mod
% Single Track Model: 1rss.t06-w0.5.mod
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% Single Track Model: 1twfA.t06-w0.5.mod
% Single Track Model: 1rm6C.t06-w0.5.mod
% Single Track Model: 1sqsA.t06-w0.5.mod
% Single Track Model: 2fi1A.t06-w0.5.mod
% Single Track Model: 1bg4.t06-w0.5.mod
% Single Track Model: 1i9gA.t06-w0.5.mod
% Single Track Model: 1vq0A.t06-w0.5.mod
% Single Track Model: 1e87A.t06-w0.5.mod
% Single Track Model: 1xr0A.t06-w0.5.mod
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% Single Track Model: 1dqpA.t06-w0.5.mod
% Single Track Model: 2bbdA.t06-w0.5.mod
% Single Track Model: 1ms9A.t06-w0.5.mod
% Single Track Model: 1zkrA.t06-w0.5.mod
% Single Track Model: 1w66A.t06-w0.5.mod
% Single Track Model: 1eayC.t06-w0.5.mod
% Single Track Model: 1yh3A.t06-w0.5.mod
% Single Track Model: 1uv4A.t06-w0.5.mod
% Single Track Model: 1olmA.t06-w0.5.mod
% Single Track Model: 2a0b.t06-w0.5.mod
% Single Track Model: 1oz9A.t06-w0.5.mod
% Single Track Model: 1kdoA.t06-w0.5.mod
% Single Track Model: 1o4yA.t06-w0.5.mod
% Single Track Model: 1ek0A.t06-w0.5.mod
% Single Track Model: 1uvqB.t06-w0.5.mod
% Single Track Model: 1ju3A.t06-w0.5.mod
% Single Track Model: 1b8oA.t06-w0.5.mod
% Single Track Model: 1kjvB.t06-w0.5.mod
% Single Track Model: 2a9iA.t06-w0.5.mod
% Single Track Model: 1csn.t06-w0.5.mod
% Single Track Model: 1q6oA.t06-w0.5.mod
% Single Track Model: 2byoA.t06-w0.5.mod
% Single Track Model: 1gpqA.t06-w0.5.mod
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% Single Track Model: 1jo0A.t06-w0.5.mod
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% Single Track Model: 1b5fA.t06-w0.5.mod
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% Single Track Model: 1f0lA.t06-w0.5.mod
% Single Track Model: 1qhqA.t06-w0.5.mod
% Single Track Model: 1avyA.t06-w0.5.mod
% Single Track Model: 2bjkA.t06-w0.5.mod
% Single Track Model: 2gokA.t06-w0.5.mod
% Single Track Model: 1he7A.t06-w0.5.mod
% Single Track Model: 1cp2A.t06-w0.5.mod
% Single Track Model: 1y9lA.t06-w0.5.mod
% Single Track Model: 1v0aA.t06-w0.5.mod
% Single Track Model: 1dbiA.t06-w0.5.mod
% Single Track Model: 1n0xP.t06-w0.5.mod
% Single Track Model: 1ne8A.t06-w0.5.mod
% Single Track Model: 1dpjA.t06-w0.5.mod
% Single Track Model: 1bjaA.t06-w0.5.mod
% Single Track Model: 1uw1A.t06-w0.5.mod
% Single Track Model: 1ihbA.t06-w0.5.mod
% Single Track Model: 2bl2A.t06-w0.5.mod
% Single Track Model: 1uddA.t06-w0.5.mod
% Single Track Model: 2cdnA.t06-w0.5.mod
% Single Track Model: 1jnmA.t06-w0.5.mod
% Single Track Model: 1vlrA.t06-w0.5.mod
% Single Track Model: 1d9cA.t06-w0.5.mod
% Single Track Model: 1yyaA.t06-w0.5.mod
% Single Track Model: 1z52A.t06-w0.5.mod
% Single Track Model: 1jayA.t06-w0.5.mod
% Single Track Model: 1ov9A.t06-w0.5.mod
% Single Track Model: 1upaA.t06-w0.5.mod
% Single Track Model: 1pii.t06-w0.5.mod
% Single Track Model: 1oo2A.t06-w0.5.mod
% Single Track Model: 1lshA.t06-w0.5.mod
% Single Track Model: 1mugA.t06-w0.5.mod
% Single Track Model: 1i2aA.t06-w0.5.mod
% Single Track Model: 1vioA.t06-w0.5.mod
% Single Track Model: 1je8A.t06-w0.5.mod
% Single Track Model: 1kr7A.t06-w0.5.mod
% Single Track Model: 2fxqA.t06-w0.5.mod
% Single Track Model: 2covD.t06-w0.5.mod
% Single Track Model: 1j3bA.t06-w0.5.mod
% Single Track Model: 2bm8A.t06-w0.5.mod
% Single Track Model: 1hx6A.t06-w0.5.mod
% Single Track Model: 1hzdA.t06-w0.5.mod
% Single Track Model: 1rdg.t06-w0.5.mod
% Single Track Model: 1sw5A.t06-w0.5.mod
% Single Track Model: 1i12A.t06-w0.5.mod
% Single Track Model: 1mqkL.t06-w0.5.mod
% Single Track Model: 1jjvA.t06-w0.5.mod
% Single Track Model: 1xk7A.t06-w0.5.mod
% Single Track Model: 1lqaA.t06-w0.5.mod
% Single Track Model: 1jb0K.t06-w0.5.mod
% Single Track Model: 1r4pA.t06-w0.5.mod
% Single Track Model: 2f6eA.t06-w0.5.mod
% Single Track Model: 1zvhA.t06-w0.5.mod
% Single Track Model: 1z6fA.t06-w0.5.mod
% Single Track Model: 2cxvA.t06-w0.5.mod
% Single Track Model: 1zjcA.t06-w0.5.mod
% Single Track Model: 1di1A.t06-w0.5.mod
% Single Track Model: 3tgl.t06-w0.5.mod
% Single Track Model: 1v4pA.t06-w0.5.mod
% Single Track Model: 1xvsA.t06-w0.5.mod
% Single Track Model: 1nxhA.t06-w0.5.mod
% Single Track Model: 1wy9A.t06-w0.5.mod
% Single Track Model: 1nofA.t06-w0.5.mod
% Single Track Model: 2b0vA.t06-w0.5.mod
% Single Track Model: 1h8dL.t06-w0.5.mod
% Single Track Model: 1vlgA.t06-w0.5.mod
% Single Track Model: 1wzcA.t06-w0.5.mod
% Single Track Model: 1w9pA.t06-w0.5.mod
% Single Track Model: 1uf3A.t06-w0.5.mod
% Single Track Model: 1jakA.t06-w0.5.mod
% Single Track Model: 4cpv.t06-w0.5.mod
% Single Track Model: 2bmjA.t06-w0.5.mod
% Single Track Model: 1c1lA.t06-w0.5.mod
% Single Track Model: 1vixA.t06-w0.5.mod
% Single Track Model: 1m3wA.t06-w0.5.mod
% Single Track Model: 1mn8A.t06-w0.5.mod
% Single Track Model: 2cb5A.t06-w0.5.mod
% Single Track Model: 1jatA.t06-w0.5.mod
% Single Track Model: 2al3A.t06-w0.5.mod
% Single Track Model: 1m3kA.t06-w0.5.mod
% Single Track Model: 1d2sA.t06-w0.5.mod
% Single Track Model: 2fnjB.t06-w0.5.mod
% Single Track Model: 2ar1A.t06-w0.5.mod
% Single Track Model: 1rl0A.t06-w0.5.mod
% Single Track Model: 2bh8A.t06-w0.5.mod
% Single Track Model: 2ch7A.t06-w0.5.mod
% Single Track Model: 1e4cP.t06-w0.5.mod
% Single Track Model: 1zwyA.t06-w0.5.mod
% Single Track Model: 1tujA.t06-w0.5.mod
% Single Track Model: 1zsxA.t06-w0.5.mod
% Single Track Model: 1euvB.t06-w0.5.mod
% Single Track Model: 1v6tA.t06-w0.5.mod
% Single Track Model: 1bu8A.t06-w0.5.mod
% Single Track Model: 1v93A.t06-w0.5.mod
% Single Track Model: 1rpb.t06-w0.5.mod
% Single Track Model: 1zjrA.t06-w0.5.mod
% Single Track Model: 1z2wA.t06-w0.5.mod
% Single Track Model: 1gwyA.t06-w0.5.mod
% Single Track Model: 1o9yA.t06-w0.5.mod
% Single Track Model: 1v98A.t06-w0.5.mod
% Single Track Model: 2bibA.t06-w0.5.mod
% Single Track Model: 1k8kG.t06-w0.5.mod
% Single Track Model: 1gz2A.t06-w0.5.mod
% Single Track Model: 1xl7A.t06-w0.5.mod
% Single Track Model: 1ssqA.t06-w0.5.mod
% Single Track Model: 1kk8B.t06-w0.5.mod
% Single Track Model: 1fw5A.t06-w0.5.mod
% Single Track Model: 1o63A.t06-w0.5.mod
% Single Track Model: 1t64A.t06-w0.5.mod
% Single Track Model: 2fpqA.t06-w0.5.mod
% Single Track Model: 2cs3A.t06-w0.5.mod
% Single Track Model: 1mz4A.t06-w0.5.mod
% Single Track Model: 2scpA.t06-w0.5.mod
% Single Track Model: 1bbg.t06-w0.5.mod
% Single Track Model: 1iukA.t06-w0.5.mod
% Single Track Model: 1eaxA.t06-w0.5.mod
% Single Track Model: 1mtpA.t06-w0.5.mod
% Single Track Model: 1urjA.t06-w0.5.mod
% Single Track Model: 1niyA.t06-w0.5.mod
% Single Track Model: 1sgvA.t06-w0.5.mod
% Single Track Model: 1r8oB.t06-w0.5.mod
% Single Track Model: 1cdq.t06-w0.5.mod
% Single Track Model: 1c17M.t06-w0.5.mod
% Single Track Model: 2amhA.t06-w0.5.mod
% Single Track Model: 1jdmA.t06-w0.5.mod
% Single Track Model: 1tzjA.t06-w0.5.mod
% Single Track Model: 1sxvA.t06-w0.5.mod
% Single Track Model: 1ft5A.t06-w0.5.mod
% Single Track Model: 1lurA.t06-w0.5.mod
% Single Track Model: 1ni4A.t06-w0.5.mod
% Single Track Model: 1r64A.t06-w0.5.mod
% Single Track Model: 1e8cA.t06-w0.5.mod
% Single Track Model: 1z2nX.t06-w0.5.mod
% Single Track Model: 1mpxA.t06-w0.5.mod
% Single Track Model: 1lk2A.t06-w0.5.mod
% Single Track Model: 1l1sA.t06-w0.5.mod
% Single Track Model: 2bkxA.t06-w0.5.mod
% Single Track Model: 1zzpA.t06-w0.5.mod
% Single Track Model: 1d3bB.t06-w0.5.mod
% Single Track Model: 1qgvA.t06-w0.5.mod
% Single Track Model: 1htrP.t06-w0.5.mod
% Single Track Model: 1cz6A.t06-w0.5.mod
% Single Track Model: 1dpjB.t06-w0.5.mod
% Single Track Model: 1a32.t06-w0.5.mod
% Single Track Model: 1lldA.t06-w0.5.mod
% Single Track Model: 1tr8A.t06-w0.5.mod
% Single Track Model: 1thqA.t06-w0.5.mod
% Single Track Model: 1p6oA.t06-w0.5.mod
% Single Track Model: 1kpsB.t06-w0.5.mod
% Single Track Model: 1g3mA.t06-w0.5.mod
% Single Track Model: 1x5vA.t06-w0.5.mod
% Single Track Model: 1dp4A.t06-w0.5.mod
% Single Track Model: 1l7mA.t06-w0.5.mod
% Single Track Model: 2fug5.t06-w0.5.mod
% Single Track Model: 1u0iA.t06-w0.5.mod
% Single Track Model: 1zo2A.t06-w0.5.mod
% Single Track Model: 1ybzA.t06-w0.5.mod
% Single Track Model: 1i4uA.t06-w0.5.mod
% Single Track Model: 1wqjB.t06-w0.5.mod
% Single Track Model: 2b06A.t06-w0.5.mod
% Single Track Model: 1f3uA.t06-w0.5.mod
% Single Track Model: 1h8pA.t06-w0.5.mod
% Single Track Model: 1m0wA.t06-w0.5.mod
% Single Track Model: 1wo8A.t06-w0.5.mod
% Single Track Model: 2aukA.t06-w0.5.mod
% Single Track Model: 1f7uA.t06-w0.5.mod
% Single Track Model: 1dtc.t06-w0.5.mod
% Single Track Model: 1s5dA.t06-w0.5.mod
% Single Track Model: 1wraA.t06-w0.5.mod
% Single Track Model: 1m40A.t06-w0.5.mod
% Single Track Model: 1swvA.t06-w0.5.mod
% Single Track Model: 1bnb.t06-w0.5.mod
% Single Track Model: 1gcyA.t06-w0.5.mod
% Single Track Model: 1v38A.t06-w0.5.mod
% Single Track Model: 1g5tA.t06-w0.5.mod
% Single Track Model: 1jcaA.t06-w0.5.mod
% Single Track Model: 1s7zA.t06-w0.5.mod
% Single Track Model: 1d2vA.t06-w0.5.mod
% Single Track Model: 2cfxA.t06-w0.5.mod
% Single Track Model: 1tfr.t06-w0.5.mod
% Single Track Model: 1e6yB.t06-w0.5.mod
% Single Track Model: 3c2c.t06-w0.5.mod
% Single Track Model: 2an3A.t06-w0.5.mod
% Single Track Model: 1zc1A.t06-w0.5.mod
% Single Track Model: 1x42A.t06-w0.5.mod
% Single Track Model: 1bo4A.t06-w0.5.mod
% Single Track Model: 1pufB.t06-w0.5.mod
% Single Track Model: 1mea.t06-w0.5.mod
% Single Track Model: 1h7eA.t06-w0.5.mod
% Single Track Model: 1bw3.t06-w0.5.mod
% Single Track Model: 2db3A.t06-w0.5.mod
% Single Track Model: 2a3nA.t06-w0.5.mod
% Single Track Model: 1pvgA.t06-w0.5.mod
% Single Track Model: 1uslA.t06-w0.5.mod
% Single Track Model: 1pzsA.t06-w0.5.mod
% Single Track Model: 1ppjD.t06-w0.5.mod
% Single Track Model: 1x6fA.t06-w0.5.mod
% Single Track Model: 1vkpA.t06-w0.5.mod
% Single Track Model: 1iz6A.t06-w0.5.mod
% Single Track Model: 1hcnB.t06-w0.5.mod
% Single Track Model: 1m7vA.t06-w0.5.mod
% Single Track Model: 1t07A.t06-w0.5.mod
% Single Track Model: 1jcfA.t06-w0.5.mod
% Single Track Model: 1sq5A.t06-w0.5.mod
% Single Track Model: 1uozA.t06-w0.5.mod
% Single Track Model: 1ht6A.t06-w0.5.mod
% Single Track Model: 1xxlA.t06-w0.5.mod
% Single Track Model: 1czpA.t06-w0.5.mod
% Single Track Model: 1ok7A.t06-w0.5.mod
% Single Track Model: 2bitX.t06-w0.5.mod
% Single Track Model: 2f3yA.t06-w0.5.mod
% Single Track Model: 1wvhA.t06-w0.5.mod
% Single Track Model: 1ve4A.t06-w0.5.mod
% Single Track Model: 1gpc.t06-w0.5.mod
% Single Track Model: 2b1yA.t06-w0.5.mod
% Single Track Model: 1in4A.t06-w0.5.mod
% Single Track Model: 2bkyX.t06-w0.5.mod
% Single Track Model: 1tp5A.t06-w0.5.mod
% Single Track Model: 1jksA.t06-w0.5.mod
% Single Track Model: 2fr2A.t06-w0.5.mod
% Single Track Model: 2pvbA.t06-w0.5.mod
% Single Track Model: 1j77A.t06-w0.5.mod
% Single Track Model: 1hxrA.t06-w0.5.mod
% Single Track Model: 1kq1A.t06-w0.5.mod
% Single Track Model: 1ktgA.t06-w0.5.mod
% Single Track Model: 2a40C.t06-w0.5.mod
% Single Track Model: 1vcc.t06-w0.5.mod
% Single Track Model: 2cvzA.t06-w0.5.mod
% Single Track Model: 2bv5A.t06-w0.5.mod
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% Single Track Model: 2bbhA.t06-w0.5.mod
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% Single Track Model: 1ek6A.t06-w0.5.mod
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% Single Track Model: 1cb0A.t06-w0.5.mod
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% Single Track Model: 1sc3B.t06-w0.5.mod
% Single Track Model: 1evlA.t06-w0.5.mod
% Single Track Model: 2au5A.t06-w0.5.mod
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% Single Track Model: 1stmA.t06-w0.5.mod
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% Single Track Model: 1oh0A.t06-w0.5.mod
% Single Track Model: 2fgeA.t06-w0.5.mod
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% Single Track Model: 2fg9A.t06-w0.5.mod
% Single Track Model: 1ehs.t06-w0.5.mod
% Single Track Model: 1t0tV.t06-w0.5.mod
% Single Track Model: 1hekA.t06-w0.5.mod
% Single Track Model: 1e6uA.t06-w0.5.mod
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% Single Track Model: 1q5yA.t06-w0.5.mod
% Single Track Model: 3gcb.t06-w0.5.mod
% Single Track Model: 1mkaA.t06-w0.5.mod
% Single Track Model: 1x0oA.t06-w0.5.mod
% Single Track Model: 1hw5A.t06-w0.5.mod
% Single Track Model: 1bf2.t06-w0.5.mod
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% Single Track Model: 1latA.t06-w0.5.mod
% Single Track Model: 1jrrA.t06-w0.5.mod
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% Single Track Model: 2b5nA.t06-w0.5.mod
% Single Track Model: 1n0qA.t06-w0.5.mod
% Single Track Model: 1nziA.t06-w0.5.mod
% Single Track Model: 2gwgA.t06-w0.5.mod
% Single Track Model: 1v7lA.t06-w0.5.mod
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% Single Track Model: 1rpqW.t06-w0.5.mod
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% Single Track Model: 1tib.t06-w0.5.mod
% Single Track Model: 1o0xA.t06-w0.5.mod
% Single Track Model: 1ngzA.t06-w0.5.mod
% Single Track Model: 1ei5A.t06-w0.5.mod
% Single Track Model: 2c4nA.t06-w0.5.mod
% Single Track Model: 1bgvA.t06-w0.5.mod
% Single Track Model: 1on3A.t06-w0.5.mod
% Single Track Model: 1n7eA.t06-w0.5.mod
% Single Track Model: 1ymkA.t06-w0.5.mod
% Single Track Model: 1vqoM.t06-w0.5.mod
% Single Track Model: 1rw7A.t06-w0.5.mod
% Single Track Model: 1m7sA.t06-w0.5.mod
% Single Track Model: 2d5cA.t06-w0.5.mod
% Single Track Model: 2cw9A.t06-w0.5.mod
% Single Track Model: 1hulA.t06-w0.5.mod
% Single Track Model: 2fo3A.t06-w0.5.mod
% Single Track Model: 1y2mA.t06-w0.5.mod
% Single Track Model: 1kugA.t06-w0.5.mod
% Single Track Model: 1v9tA.t06-w0.5.mod
% Single Track Model: 1vfyA.t06-w0.5.mod
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% Single Track Model: 1wm3A.t06-w0.5.mod
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% Single Track Model: 1d6bA.t06-w0.5.mod
% Single Track Model: 1gdhA.t06-w0.5.mod
% Single Track Model: 1l3iA.t06-w0.5.mod
% Single Track Model: 1nycA.t06-w0.5.mod
% Single Track Model: 1olrA.t06-w0.5.mod
% Single Track Model: 1dqgA.t06-w0.5.mod
% Single Track Model: 1vrbA.t06-w0.5.mod
% Single Track Model: 1txkA.t06-w0.5.mod
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% Single Track Model: 1h7sA.t06-w0.5.mod
% Single Track Model: 1pq7A.t06-w0.5.mod
% Single Track Model: 1wu4A.t06-w0.5.mod
% Single Track Model: 1gvhA.t06-w0.5.mod
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% Single Track Model: 1nar.t06-w0.5.mod
% Single Track Model: 1mof.t06-w0.5.mod
% Single Track Model: 1ug0A.t06-w0.5.mod
% Single Track Model: 1kyfA.t06-w0.5.mod
% Single Track Model: 1fqiA.t06-w0.5.mod
% Single Track Model: 1xrkA.t06-w0.5.mod
% Single Track Model: 1ustA.t06-w0.5.mod
% Single Track Model: 2f23A.t06-w0.5.mod
% Single Track Model: 1rk8C.t06-w0.5.mod
% Single Track Model: 2ew8A.t06-w0.5.mod
% Single Track Model: 1mjuL.t06-w0.5.mod
% Single Track Model: 1vf7A.t06-w0.5.mod
% Single Track Model: 1rijA.t06-w0.5.mod
% Single Track Model: 1qq5A.t06-w0.5.mod
% Single Track Model: 1r0dA.t06-w0.5.mod
% Single Track Model: 2eriA.t06-w0.5.mod
% Single Track Model: 1urfA.t06-w0.5.mod
% Single Track Model: 2bsfA.t06-w0.5.mod
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% Single Track Model: 1uoyA.t06-w0.5.mod
% Single Track Model: 1oa4A.t06-w0.5.mod
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% Single Track Model: 1j54A.t06-w0.5.mod
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% Single Track Model: 1wtaA.t06-w0.5.mod
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% Single Track Model: 2a07F.t06-w0.5.mod
% Single Track Model: 1za0A.t06-w0.5.mod
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% Single Track Model: 1njrA.t06-w0.5.mod
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% Single Track Model: 1odhA.t06-w0.5.mod
% Single Track Model: 1ksiA.t06-w0.5.mod
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% Single Track Model: 1zeqX.t06-w0.5.mod
% Single Track Model: 1l5aA.t06-w0.5.mod
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% Single Track Model: 1o17A.t06-w0.5.mod
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% Single Track Model: 1a0cA.t06-w0.5.mod
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% Single Track Model: 1a8s.t06-w0.5.mod
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% Single Track Model: 1gutA.t06-w0.5.mod
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% Single Track Model: 1dqwA.t06-w0.5.mod
% Single Track Model: 2hmzA.t06-w0.5.mod
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% Single Track Model: 1wosA.t06-w0.5.mod
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% Single Track Model: 2a1vA.t06-w0.5.mod
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% Single Track Model: 1wphA.t06-w0.5.mod
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% Single Track Model: 2arpA.t06-w0.5.mod
% Single Track Model: 12asA.t06-w0.5.mod
% Single Track Model: 1odkA.t06-w0.5.mod
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% Single Track Model: 2ar0A.t06-w0.5.mod
% Single Track Model: 1qmvA.t06-w0.5.mod
% Single Track Model: 2aneA.t06-w0.5.mod
% Single Track Model: 1pvdA.t06-w0.5.mod
% Single Track Model: 1y9bA.t06-w0.5.mod
% Single Track Model: 1i5jA.t06-w0.5.mod
% Single Track Model: 1jf3A.t06-w0.5.mod
% Single Track Model: 1mkkA.t06-w0.5.mod
% Single Track Model: 1n55A.t06-w0.5.mod
% Single Track Model: 1tc3C.t06-w0.5.mod
% Single Track Model: 1z2tA.t06-w0.5.mod
% Single Track Model: 1z2mA.t06-w0.5.mod
% Single Track Model: 2g7uA.t06-w0.5.mod
% Single Track Model: 1xm9A.t06-w0.5.mod
% Single Track Model: 2cdcA.t06-w0.5.mod
% Single Track Model: 1u07A.t06-w0.5.mod
% Single Track Model: 1rz1A.t06-w0.5.mod
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% Single Track Model: 1j71A.t06-w0.5.mod
% Single Track Model: 1wy0A.t06-w0.5.mod
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% Single Track Model: 1ztcA.t06-w0.5.mod
% Single Track Model: 2gjlA.t06-w0.5.mod
% Single Track Model: 1ica.t06-w0.5.mod
% Single Track Model: 1pbwA.t06-w0.5.mod
% Single Track Model: 1eswA.t06-w0.5.mod
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% Single Track Model: 1kmvA.t06-w0.5.mod
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% Single Track Model: 1y0mA.t06-w0.5.mod
% Single Track Model: 1tjlA.t06-w0.5.mod
% Single Track Model: 1ogaD.t06-w0.5.mod
% Single Track Model: 1vi6A.t06-w0.5.mod
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% Single Track Model: 1xakA.t06-w0.5.mod
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% Single Track Model: 1lwdA.t06-w0.5.mod
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% Single Track Model: 1kl9A.t06-w0.5.mod
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% Single Track Model: 1vh4A.t06-w0.5.mod
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% Single Track Model: 1gqiA.t06-w0.5.mod
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% Single Track Model: 1fwoA.t06-w0.5.mod
% Single Track Model: 1rwzA.t06-w0.5.mod
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% Single Track Model: 1b9uA.t06-w0.5.mod
% Single Track Model: 1j1jA.t06-w0.5.mod
% Single Track Model: 1upiA.t06-w0.5.mod
% Single Track Model: 1fl2A.t06-w0.5.mod
% Single Track Model: 1o65A.t06-w0.5.mod
% Single Track Model: 1mbyA.t06-w0.5.mod
% Single Track Model: 1n0wB.t06-w0.5.mod
% Single Track Model: 1bsg.t06-w0.5.mod
% Single Track Model: 1ab8A.t06-w0.5.mod
% Single Track Model: 1hxiA.t06-w0.5.mod
% Single Track Model: 2ctoA.t06-w0.5.mod
% Single Track Model: 1a4iA.t06-w0.5.mod
% Single Track Model: 1ahsA.t06-w0.5.mod
% Single Track Model: 1uzvA.t06-w0.5.mod
% Single Track Model: 1aoeA.t06-w0.5.mod
% Single Track Model: 2gkeA.t06-w0.5.mod
% Single Track Model: 1vkmA.t06-w0.5.mod
% Single Track Model: 1ae7.t06-w0.5.mod
% Single Track Model: 1wx1A.t06-w0.5.mod
% Single Track Model: 1p3dA.t06-w0.5.mod
% Single Track Model: 1x8qA.t06-w0.5.mod
% Single Track Model: 2csvA.t06-w0.5.mod
% Single Track Model: 1se0A.t06-w0.5.mod
% Single Track Model: 1yifA.t06-w0.5.mod
% Single Track Model: 1vetA.t06-w0.5.mod
% Single Track Model: 1qhlA.t06-w0.5.mod
% Single Track Model: 1fs7A.t06-w0.5.mod
% Single Track Model: 1eazA.t06-w0.5.mod
% Single Track Model: 1xy7A.t06-w0.5.mod
% Single Track Model: 1v10A.t06-w0.5.mod
% Single Track Model: 1g8qA.t06-w0.5.mod
% Single Track Model: 2fkiA.t06-w0.5.mod
% Single Track Model: 1n0xH.t06-w0.5.mod
% Single Track Model: 1zd0A.t06-w0.5.mod
% Single Track Model: 1vhrA.t06-w0.5.mod
% Single Track Model: 2ex3B.t06-w0.5.mod
% Single Track Model: 1ww8A.t06-w0.5.mod
% Single Track Model: 1npsA.t06-w0.5.mod
% Single Track Model: 2fmpA.t06-w0.5.mod
% Single Track Model: 1tz9A.t06-w0.5.mod
% Single Track Model: 1ypqA.t06-w0.5.mod
% Single Track Model: 1kw4A.t06-w0.5.mod
% Single Track Model: 1iq5B.t06-w0.5.mod
% Single Track Model: 1xjcA.t06-w0.5.mod
% Single Track Model: 1btn.t06-w0.5.mod
% Single Track Model: 1m4jA.t06-w0.5.mod
% Single Track Model: 1w9gA.t06-w0.5.mod
% Single Track Model: 1hcd.t06-w0.5.mod
% Single Track Model: 1z1zA.t06-w0.5.mod
% Single Track Model: 1jpyA.t06-w0.5.mod
% Single Track Model: 1f1mA.t06-w0.5.mod
% Single Track Model: 1vkkA.t06-w0.5.mod
% Single Track Model: 2aj6A.t06-w0.5.mod
% Single Track Model: 1pp0A.t06-w0.5.mod
% Single Track Model: 1e6yC.t06-w0.5.mod
% Single Track Model: 1floA.t06-w0.5.mod
% Single Track Model: 1v60A.t06-w0.5.mod
% Single Track Model: 1whuA.t06-w0.5.mod
% Single Track Model: 1v9mA.t06-w0.5.mod
% Single Track Model: 1kgsA.t06-w0.5.mod
% Single Track Model: 1pd7B.t06-w0.5.mod
% Single Track Model: 1f2lA.t06-w0.5.mod
% Single Track Model: 2bwkA.t06-w0.5.mod
% Single Track Model: 1wozA.t06-w0.5.mod
% Single Track Model: 1odp.t06-w0.5.mod
% Single Track Model: 2cw6A.t06-w0.5.mod
% Single Track Model: 1dkqA.t06-w0.5.mod
% Single Track Model: 1ckxA.t06-w0.5.mod
% Single Track Model: 1k4zA.t06-w0.5.mod
% Single Track Model: 1xyiA.t06-w0.5.mod
% Single Track Model: 1pl4A.t06-w0.5.mod
% Single Track Model: 1ox0A.t06-w0.5.mod
% Single Track Model: 1wc2A.t06-w0.5.mod
% Single Track Model: 1jb9A.t06-w0.5.mod
% Single Track Model: 2tpsA.t06-w0.5.mod
% Single Track Model: 1tmxA.t06-w0.5.mod
% Single Track Model: 2apoB.t06-w0.5.mod
% Single Track Model: 1yovA.t06-w0.5.mod
% Single Track Model: 2d7vA.t06-w0.5.mod
% Single Track Model: 1xnaA.t06-w0.5.mod
% Single Track Model: 1ky3A.t06-w0.5.mod
% Single Track Model: 1wvkA.t06-w0.5.mod
% Single Track Model: 1dbwA.t06-w0.5.mod
% Single Track Model: 1ia8A.t06-w0.5.mod
% Single Track Model: 3psg.t06-w0.5.mod
% Single Track Model: 1vlmA.t06-w0.5.mod
% Single Track Model: 1vqo2.t06-w0.5.mod
% Single Track Model: 1othA.t06-w0.5.mod
% Single Track Model: 1ui0A.t06-w0.5.mod
% Single Track Model: 1h6tA.t06-w0.5.mod
% Single Track Model: 1g8kB.t06-w0.5.mod
% Single Track Model: 1y8qA.t06-w0.5.mod
% Single Track Model: 1n0uA.t06-w0.5.mod
% Single Track Model: 1pqrA.t06-w0.5.mod
% Single Track Model: 1pi1A.t06-w0.5.mod
% Single Track Model: 8rucI.t06-w0.5.mod
% Single Track Model: 1e30A.t06-w0.5.mod
% Single Track Model: 1wyuB.t06-w0.5.mod
% Single Track Model: 1ze3H.t06-w0.5.mod
% Single Track Model: 1xhkA.t06-w0.5.mod
% Single Track Model: 1xpa.t06-w0.5.mod
% Single Track Model: 1fcyA.t06-w0.5.mod
% Single Track Model: 2b0jA.t06-w0.5.mod
% Single Track Model: 1z9bA.t06-w0.5.mod
% Single Track Model: 1offA.t06-w0.5.mod
% Single Track Model: 1kcfA.t06-w0.5.mod
% Single Track Model: 1h8eG.t06-w0.5.mod
% Single Track Model: 1a2zA.t06-w0.5.mod
% Single Track Model: 1qtnA.t06-w0.5.mod
% Single Track Model: 1sqhA.t06-w0.5.mod
% Single Track Model: 2c7hA.t06-w0.5.mod
% Single Track Model: 1j5wA.t06-w0.5.mod
% Single Track Model: 1nkpB.t06-w0.5.mod
% Single Track Model: 1ln1A.t06-w0.5.mod
% Single Track Model: 1f3uB.t06-w0.5.mod
% Single Track Model: 1tbfA.t06-w0.5.mod
% Single Track Model: 1qjkA.t06-w0.5.mod
% Single Track Model: 1l9vA.t06-w0.5.mod
% Single Track Model: 2esnA.t06-w0.5.mod
% Single Track Model: 1sv0C.t06-w0.5.mod
% Single Track Model: 1o5zA.t06-w0.5.mod
% Single Track Model: 1914.t06-w0.5.mod
% Single Track Model: 1g5hA.t06-w0.5.mod
% Single Track Model: 1yi8A.t06-w0.5.mod
% Single Track Model: 1oboA.t06-w0.5.mod
% Single Track Model: 1vlbA.t06-w0.5.mod
% Single Track Model: 1dekA.t06-w0.5.mod
% Single Track Model: 1yt5A.t06-w0.5.mod
% Single Track Model: 1qwnA.t06-w0.5.mod
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% Single Track Model: 2giyA.t06-w0.5.mod
% Single Track Model: 2f9lA.t06-w0.5.mod
% Single Track Model: 2bn3A.t06-w0.5.mod
% Single Track Model: 1kafA.t06-w0.5.mod
% Single Track Model: 2eng.t06-w0.5.mod
% Single Track Model: 1ogoX.t06-w0.5.mod
% Single Track Model: 1pvvA.t06-w0.5.mod
% Single Track Model: 1qg8A.t06-w0.5.mod
% Single Track Model: 1agqA.t06-w0.5.mod
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% Single Track Model: 1zin.t06-w0.5.mod
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% Single Track Model: 1s3eA.t06-w0.5.mod
% Single Track Model: 1wzzA.t06-w0.5.mod
% Single Track Model: 1qy5A.t06-w0.5.mod
% Single Track Model: 1cvrA.t06-w0.5.mod
% Single Track Model: 1mla.t06-w0.5.mod
% Single Track Model: 2fymA.t06-w0.5.mod
% Single Track Model: 2a1fA.t06-w0.5.mod
% Single Track Model: 1f9vA.t06-w0.5.mod
% Single Track Model: 1n8kA.t06-w0.5.mod
% Single Track Model: 1z2kA.t06-w0.5.mod
% Single Track Model: 1rt8A.t06-w0.5.mod
% Single Track Model: 1gqpA.t06-w0.5.mod
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% Single Track Model: 1wucA.t06-w0.5.mod
% Single Track Model: 1w2xA.t06-w0.5.mod
% Single Track Model: 1dw4A.t06-w0.5.mod
% Single Track Model: 1q3oA.t06-w0.5.mod
% Single Track Model: 2cszA.t06-w0.5.mod
% Single Track Model: 1euvA.t06-w0.5.mod
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% Single Track Model: 1ugjA.t06-w0.5.mod
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% Single Track Model: 1xeoA.t06-w0.5.mod
% Single Track Model: 1wmaA.t06-w0.5.mod
% Single Track Model: 1ku1A.t06-w0.5.mod
% Single Track Model: 1rmkA.t06-w0.5.mod
% Single Track Model: 2fv7A.t06-w0.5.mod
% Single Track Model: 1x9gA.t06-w0.5.mod
% Single Track Model: 2vhbA.t06-w0.5.mod
% Single Track Model: 1vtp.t06-w0.5.mod
% Single Track Model: 1v63A.t06-w0.5.mod
% Single Track Model: 1mv8A.t06-w0.5.mod
% Single Track Model: 2cq8A.t06-w0.5.mod
% Single Track Model: 1jy2N.t06-w0.5.mod
% Single Track Model: 1umdB.t06-w0.5.mod
% Single Track Model: 1ydxA.t06-w0.5.mod
% Single Track Model: 2b4vA.t06-w0.5.mod
% Single Track Model: 2f5xA.t06-w0.5.mod
% Single Track Model: 1vkdA.t06-w0.5.mod
% Single Track Model: 1goiA.t06-w0.5.mod
% Single Track Model: 1ldjB.t06-w0.5.mod
% Single Track Model: 1n9eA.t06-w0.5.mod
% Single Track Model: 1wwtA.t06-w0.5.mod
% Single Track Model: 1u19A.t06-w0.5.mod
% Single Track Model: 1cipA.t06-w0.5.mod
% Single Track Model: 1hh5A.t06-w0.5.mod
% Single Track Model: 2blnA.t06-w0.5.mod
% Single Track Model: 1fmhA.t06-w0.5.mod
% Single Track Model: 1e5kA.t06-w0.5.mod
% Single Track Model: 2bc4A.t06-w0.5.mod
% Single Track Model: 1wu3I.t06-w0.5.mod
% Single Track Model: 1wv2A.t06-w0.5.mod
% Single Track Model: 1w9yA.t06-w0.5.mod
% Single Track Model: 1pe9A.t06-w0.5.mod
% Single Track Model: 1f20A.t06-w0.5.mod
% Single Track Model: 1v54K.t06-w0.5.mod
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% Single Track Model: 1pme.t06-w0.5.mod
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% Single Track Model: 1d9pA.t06-w0.5.mod
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% Single Track Model: 2bfxA.t06-w0.5.mod
% Single Track Model: 2eveA.t06-w0.5.mod
% Single Track Model: 1r1fA.t06-w0.5.mod
% Single Track Model: 1ijvA.t06-w0.5.mod
% Single Track Model: 1m2tB.t06-w0.5.mod
% Single Track Model: 1s1qA.t06-w0.5.mod
% Single Track Model: 1jiwI.t06-w0.5.mod
% Single Track Model: 1qtqA.t06-w0.5.mod
% Single Track Model: 1k6iA.t06-w0.5.mod
% Single Track Model: 1xxqA.t06-w0.5.mod
% Single Track Model: 1ct9A.t06-w0.5.mod
% Single Track Model: 1ybdA.t06-w0.5.mod
% Single Track Model: 1ewsA.t06-w0.5.mod
% Single Track Model: 1ob8A.t06-w0.5.mod
% Single Track Model: 1he1A.t06-w0.5.mod
% Single Track Model: 1svmA.t06-w0.5.mod
% Single Track Model: 1bqsA.t06-w0.5.mod
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% Single Track Model: 1nq6A.t06-w0.5.mod
% Single Track Model: 1k3yA.t06-w0.5.mod
% Single Track Model: 2c0zA.t06-w0.5.mod
% Single Track Model: 1mo9A.t06-w0.5.mod
% Single Track Model: 1e0nA.t06-w0.5.mod
% Single Track Model: 3nul.t06-w0.5.mod
% Single Track Model: 1x0tA.t06-w0.5.mod
% Single Track Model: 1q6hA.t06-w0.5.mod
% Single Track Model: 1uzkA.t06-w0.5.mod
% Single Track Model: 2g09A.t06-w0.5.mod
% Single Track Model: 1qjtA.t06-w0.5.mod
% Single Track Model: 1ufzA.t06-w0.5.mod
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% Single Track Model: 1m2xA.t06-w0.5.mod
% Single Track Model: 1s8iA.t06-w0.5.mod
% Single Track Model: 1g8pA.t06-w0.5.mod
% Single Track Model: 1qj4A.t06-w0.5.mod
% Single Track Model: 1x79A.t06-w0.5.mod
% Single Track Model: 1tu1A.t06-w0.5.mod
% Single Track Model: 1f5mA.t06-w0.5.mod
% Single Track Model: 1o8bA.t06-w0.5.mod
% Single Track Model: 1xh3A.t06-w0.5.mod
% Single Track Model: 2ptd.t06-w0.5.mod
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% Single Track Model: 1tqjA.t06-w0.5.mod
% Single Track Model: 2a6hE.t06-w0.5.mod
% Single Track Model: 1jpaA.t06-w0.5.mod
% Single Track Model: 1e5pA.t06-w0.5.mod
% Single Track Model: 1oneA.t06-w0.5.mod
% Single Track Model: 1zcdA.t06-w0.5.mod
% Single Track Model: 2etdA.t06-w0.5.mod
% Single Track Model: 2a33A.t06-w0.5.mod
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% Single Track Model: 1jy1A.t06-w0.5.mod
% Single Track Model: 1i7kA.t06-w0.5.mod
% Single Track Model: 1v1hA.t06-w0.5.mod
% Single Track Model: 1w50A.t06-w0.5.mod
% Single Track Model: 1v3vA.t06-w0.5.mod
% Single Track Model: 2givA.t06-w0.5.mod
% Single Track Model: 2aaoA.t06-w0.5.mod
% Single Track Model: 1n7zA.t06-w0.5.mod
% Single Track Model: 1hrhA.t06-w0.5.mod
% Single Track Model: 1enfA.t06-w0.5.mod
% Single Track Model: 1oygA.t06-w0.5.mod
% Single Track Model: 1oo0B.t06-w0.5.mod
% Single Track Model: 1nlqA.t06-w0.5.mod
% Single Track Model: 1w7bA.t06-w0.5.mod
% Single Track Model: 1o75A.t06-w0.5.mod
% Single Track Model: 1rmwA.t06-w0.5.mod
% Single Track Model: 2gl5A.t06-w0.5.mod
% Single Track Model: 1p2xA.t06-w0.5.mod
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% Single Track Model: 2audA.t06-w0.5.mod
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% Single Track Model: 1twyA.t06-w0.5.mod
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% Single Track Model: 1ypyA.t06-w0.5.mod
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% Single Track Model: 2fs2A.t06-w0.5.mod
% Single Track Model: 2ervA.t06-w0.5.mod
% Single Track Model: 1jsf.t06-w0.5.mod
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% Single Track Model: 2gdzA.t06-w0.5.mod
% Single Track Model: 1xmkA.t06-w0.5.mod
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% Single Track Model: 1z7gA.t06-w0.5.mod
% Single Track Model: 1df4A.t06-w0.5.mod
% Single Track Model: 1iloA.t06-w0.5.mod
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% Single Track Model: 1earA.t06-w0.5.mod
% Single Track Model: 2an6E.t06-w0.5.mod
% Single Track Model: 2ftzA.t06-w0.5.mod
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% Single Track Model: 1r9wA.t06-w0.5.mod
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% Single Track Model: 1h3oA.t06-w0.5.mod
% Single Track Model: 2fdsA.t06-w0.5.mod
% Single Track Model: 1ukuA.t06-w0.5.mod
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% Single Track Model: 1wlxA.t06-w0.5.mod
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% Single Track Model: 1ulrA.t06-w0.5.mod
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% Single Track Model: 1klxA.t06-w0.5.mod
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% Single Track Model: 1dqzA.t06-w0.5.mod
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% Single Track Model: 1vcdA.t06-w0.5.mod
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% Single Track Model: 1nu7D.t06-w0.5.mod
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% Single Track Model: 1ks8A.t06-w0.5.mod
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% Single Track Model: 2cqnA.t06-w0.5.mod
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% Single Track Model: 1s69A.t06-w0.5.mod
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% Single Track Model: 1lssA.t06-w0.5.mod
% Single Track Model: 1gtkA.t06-w0.5.mod
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% Single Track Model: 1deuA.t06-w0.5.mod
% Single Track Model: 1eexB.t06-w0.5.mod
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% Single Track Model: 1j5sA.t06-w0.5.mod
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% Single Track Model: 1tdhA.t06-w0.5.mod
% Single Track Model: 1ootA.t06-w0.5.mod
% Single Track Model: 1nv8A.t06-w0.5.mod
% Single Track Model: 1dzfA.t06-w0.5.mod
% Single Track Model: 1omrA.t06-w0.5.mod
% Single Track Model: 1f60A.t06-w0.5.mod
% Single Track Model: 1exg.t06-w0.5.mod
% Single Track Model: 2ftwA.t06-w0.5.mod
% Single Track Model: 1k24A.t06-w0.5.mod
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% Single Track Model: 1p5dX.t06-w0.5.mod
% Single Track Model: 1josA.t06-w0.5.mod
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% Single Track Model: 1vqoU.t06-w0.5.mod
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% Single Track Model: 1zupA.t06-w0.5.mod
% Single Track Model: 2a46A.t06-w0.5.mod
% Single Track Model: 1gu4A.t06-w0.5.mod
% Single Track Model: 1ois.t06-w0.5.mod
% Single Track Model: 1nb8A.t06-w0.5.mod
% Single Track Model: 1af7.t06-w0.5.mod
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% Single Track Model: 1ylxA.t06-w0.5.mod
% Single Track Model: 1m0uA.t06-w0.5.mod
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% Single Track Model: 1duvG.t06-w0.5.mod
% Single Track Model: 1i71A.t06-w0.5.mod
% Single Track Model: 2c0rA.t06-w0.5.mod
% Single Track Model: 1zy7A.t06-w0.5.mod
% Single Track Model: 2b6dA.t06-w0.5.mod
% Single Track Model: 1yh1A.t06-w0.5.mod
% Single Track Model: 1mo1A.t06-w0.5.mod
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% Single Track Model: 1mai.t06-w0.5.mod
% Single Track Model: 1ad2.t06-w0.5.mod
% Single Track Model: 1pa7A.t06-w0.5.mod
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% Single Track Model: 1i5gA.t06-w0.5.mod
% Single Track Model: 1gu2A.t06-w0.5.mod
% Single Track Model: 2a97A.t06-w0.5.mod
% Single Track Model: 1s57A.t06-w0.5.mod
% Single Track Model: 1gh9A.t06-w0.5.mod
% Single Track Model: 1jo6A.t06-w0.5.mod
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% Single Track Model: 1upkA.t06-w0.5.mod
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% Single Track Model: 1uxaA.t06-w0.5.mod
% Single Track Model: 1m0gA.t06-w0.5.mod
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% Single Track Model: 1vmgA.t06-w0.5.mod
% Single Track Model: 1yc7A.t06-w0.5.mod
% Single Track Model: 1nlbH.t06-w0.5.mod
% Single Track Model: 1dg6A.t06-w0.5.mod
% Single Track Model: 1qznA.t06-w0.5.mod
% Single Track Model: 1nzyA.t06-w0.5.mod
% Single Track Model: 1r7jA.t06-w0.5.mod
% Single Track Model: 2cxnA.t06-w0.5.mod
% Single Track Model: 1zlhB.t06-w0.5.mod
% Single Track Model: 1x65A.t06-w0.5.mod
% Single Track Model: 1shuX.t06-w0.5.mod
% Single Track Model: 2ct5A.t06-w0.5.mod
% Single Track Model: 1h8uA.t06-w0.5.mod
% Single Track Model: 1a7j.t06-w0.5.mod
% Single Track Model: 1tadA.t06-w0.5.mod
% Single Track Model: 2a0mA.t06-w0.5.mod
% Single Track Model: 1wi1A.t06-w0.5.mod
% Single Track Model: 1ko6A.t06-w0.5.mod
% Single Track Model: 1r03A.t06-w0.5.mod
% Single Track Model: 1l8fA.t06-w0.5.mod
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% Single Track Model: 1fthA.t06-w0.5.mod
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% Single Track Model: 1i2kA.t06-w0.5.mod
% Single Track Model: 1aquA.t06-w0.5.mod
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% Single Track Model: 1yl3V.t06-w0.5.mod
% Single Track Model: 1wzlA.t06-w0.5.mod
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% Single Track Model: 1sc3A.t06-w0.5.mod
% Single Track Model: 2fh7A.t06-w0.5.mod
% Single Track Model: 1lbjA.t06-w0.5.mod
% Single Track Model: 1vg0A.t06-w0.5.mod
% Single Track Model: 1uz5A.t06-w0.5.mod
% Single Track Model: 1riiA.t06-w0.5.mod
% Single Track Model: 2gpzA.t06-w0.5.mod
% Single Track Model: 1v54A.t06-w0.5.mod
% Single Track Model: 1at3A.t06-w0.5.mod
% Single Track Model: 4ubpC.t06-w0.5.mod
% Single Track Model: 2ck3H.t06-w0.5.mod
% Single Track Model: 1u96A.t06-w0.5.mod
% Single Track Model: 2e2aA.t06-w0.5.mod
% Single Track Model: 1dl2A.t06-w0.5.mod
% Single Track Model: 1ryqA.t06-w0.5.mod
% Single Track Model: 1d2mA.t06-w0.5.mod
% Single Track Model: 1lktA.t06-w0.5.mod
% Single Track Model: 1fm0E.t06-w0.5.mod
% Single Track Model: 1yiyA.t06-w0.5.mod
% Single Track Model: 1o06A.t06-w0.5.mod
% Single Track Model: 2hipA.t06-w0.5.mod
% Single Track Model: 2fkzA.t06-w0.5.mod
% Single Track Model: 2fhzB.t06-w0.5.mod
% Single Track Model: 1gdvA.t06-w0.5.mod
% Single Track Model: 1yeyA.t06-w0.5.mod
% Single Track Model: 1iam.t06-w0.5.mod
% Single Track Model: 1ywyA.t06-w0.5.mod
% Single Track Model: 1t0qB.t06-w0.5.mod
% Single Track Model: 2napA.t06-w0.5.mod
% Single Track Model: 2azeA.t06-w0.5.mod
% Single Track Model: 2hft.t06-w0.5.mod
% Single Track Model: 1ew6A.t06-w0.5.mod
% Single Track Model: 1i8oA.t06-w0.5.mod
% Single Track Model: 1pytA.t06-w0.5.mod
% Single Track Model: 1fit.t06-w0.5.mod
% Single Track Model: 1poiB.t06-w0.5.mod
% Single Track Model: 1et9A.t06-w0.5.mod
% Single Track Model: 1vliA.t06-w0.5.mod
% Single Track Model: 1nwzA.t06-w0.5.mod
% Single Track Model: 1weqA.t06-w0.5.mod
% Single Track Model: 1wmqA.t06-w0.5.mod
% Single Track Model: 1zw3B.t06-w0.5.mod
% Single Track Model: 1vetB.t06-w0.5.mod
% Single Track Model: 2cqfA.t06-w0.5.mod
% Single Track Model: 1u6tA.t06-w0.5.mod
% Single Track Model: 1oqvA.t06-w0.5.mod
% Single Track Model: 1vi0A.t06-w0.5.mod
% Single Track Model: 1jlvA.t06-w0.5.mod
% Single Track Model: 1brwA.t06-w0.5.mod
% Single Track Model: 1pfo.t06-w0.5.mod
% Single Track Model: 1h3fA.t06-w0.5.mod
% Single Track Model: 1w53A.t06-w0.5.mod
% Single Track Model: 1mldA.t06-w0.5.mod
% Single Track Model: 1iab.t06-w0.5.mod
% Single Track Model: 2ccwA.t06-w0.5.mod
% Single Track Model: 1qxoA.t06-w0.5.mod
% Single Track Model: 1vsrA.t06-w0.5.mod
% Single Track Model: 1na3A.t06-w0.5.mod
% Single Track Model: 1gl1I.t06-w0.5.mod
% Single Track Model: 1myt.t06-w0.5.mod
% Single Track Model: 1pq4A.t06-w0.5.mod
% Single Track Model: 1jh4B.t06-w0.5.mod
% Single Track Model: 1lo7A.t06-w0.5.mod
% Single Track Model: 1jspA.t06-w0.5.mod
% Single Track Model: 1ihkA.t06-w0.5.mod
% Single Track Model: 2axtJ.t06-w0.5.mod
% Single Track Model: 1d1qA.t06-w0.5.mod
% Single Track Model: 1xbiA.t06-w0.5.mod
% Single Track Model: 1z8sA.t06-w0.5.mod
% Single Track Model: 1cs0A.t06-w0.5.mod
% Single Track Model: 1qtnB.t06-w0.5.mod
% Single Track Model: 1lmrA.t06-w0.5.mod
% Single Track Model: 1m1nA.t06-w0.5.mod
% Single Track Model: 1l8rA.t06-w0.5.mod
% Single Track Model: 1iqcA.t06-w0.5.mod
% Single Track Model: 2g7lA.t06-w0.5.mod
% Single Track Model: 1u7pA.t06-w0.5.mod
% Single Track Model: 1i0dA.t06-w0.5.mod
% Single Track Model: 2g39A.t06-w0.5.mod
% Single Track Model: 1g79A.t06-w0.5.mod
% Single Track Model: 1tvxA.t06-w0.5.mod
% Single Track Model: 1thtA.t06-w0.5.mod
% Single Track Model: 1wer.t06-w0.5.mod
% Single Track Model: 1uypA.t06-w0.5.mod
% Single Track Model: 1lkdA.t06-w0.5.mod
% Single Track Model: 1w0pA.t06-w0.5.mod
% Single Track Model: 1scfA.t06-w0.5.mod
% Single Track Model: 1y1oA.t06-w0.5.mod
% Single Track Model: 1qnaA.t06-w0.5.mod
% Single Track Model: 1r5lA.t06-w0.5.mod
% Single Track Model: 1alvA.t06-w0.5.mod
% Single Track Model: 1y8qB.t06-w0.5.mod
% Single Track Model: 1ud0A.t06-w0.5.mod
% Single Track Model: 1z1dA.t06-w0.5.mod
% Single Track Model: 1xtzA.t06-w0.5.mod
% Single Track Model: 1vd4A.t06-w0.5.mod
% Single Track Model: 1zzaA.t06-w0.5.mod
% Single Track Model: 1vf1A.t06-w0.5.mod
% Single Track Model: 1y6uA.t06-w0.5.mod
% Single Track Model: 1rc6A.t06-w0.5.mod
% Single Track Model: 1jtgB.t06-w0.5.mod
% Single Track Model: 1ty0A.t06-w0.5.mod
% Single Track Model: 1qgc5.t06-w0.5.mod
% Single Track Model: 1ijtA.t06-w0.5.mod
% Single Track Model: 1zpwX.t06-w0.5.mod
% Single Track Model: 2hvm.t06-w0.5.mod
% Single Track Model: 1rq2A.t06-w0.5.mod
% Single Track Model: 2esyA.t06-w0.5.mod
% Single Track Model: 1spxA.t06-w0.5.mod
% Single Track Model: 1pieA.t06-w0.5.mod
% Single Track Model: 1jf8A.t06-w0.5.mod
% Single Track Model: 1wvgA.t06-w0.5.mod
% Single Track Model: 1yixA.t06-w0.5.mod
% Single Track Model: 1xq6A.t06-w0.5.mod
% Single Track Model: 2fbwD.t06-w0.5.mod
% Single Track Model: 1a8o.t06-w0.5.mod
% Single Track Model: 2baa.t06-w0.5.mod
% Single Track Model: 1g9pA.t06-w0.5.mod
% Single Track Model: 1mxrA.t06-w0.5.mod
% Single Track Model: 2ck3I.t06-w0.5.mod
% Single Track Model: 1lk9A.t06-w0.5.mod
% Single Track Model: 1z5yE.t06-w0.5.mod
% Single Track Model: 1tafB.t06-w0.5.mod
% Single Track Model: 1m1qA.t06-w0.5.mod
% Single Track Model: 1f0yA.t06-w0.5.mod
% Single Track Model: 1ouwA.t06-w0.5.mod
% Single Track Model: 1h99A.t06-w0.5.mod
% Single Track Model: 1sr2A.t06-w0.5.mod
% Single Track Model: 1c9oA.t06-w0.5.mod
% Single Track Model: 1sopA.t06-w0.5.mod
% Single Track Model: 2a3qA.t06-w0.5.mod
% Single Track Model: 1vmjA.t06-w0.5.mod
% Single Track Model: 1q3iA.t06-w0.5.mod
% Single Track Model: 2g7sA.t06-w0.5.mod
% Single Track Model: 1xdpA.t06-w0.5.mod
% Single Track Model: 1n7sD.t06-w0.5.mod
% Single Track Model: 1f6bA.t06-w0.5.mod
% Single Track Model: 1xgsA.t06-w0.5.mod
% Single Track Model: 1eeqA.t06-w0.5.mod
% Single Track Model: 1gppA.t06-w0.5.mod
% Single Track Model: 2fflA.t06-w0.5.mod
% Single Track Model: 1e4tA.t06-w0.5.mod
% Single Track Model: 1xdyA.t06-w0.5.mod
% Single Track Model: 1iyjB.t06-w0.5.mod
% Single Track Model: 1x7yA.t06-w0.5.mod
% Single Track Model: 1es9A.t06-w0.5.mod
% Single Track Model: 1q7lA.t06-w0.5.mod
% Single Track Model: 1te2A.t06-w0.5.mod
% Single Track Model: 1tkiA.t06-w0.5.mod
% Single Track Model: 1v54F.t06-w0.5.mod
% Single Track Model: 1v5iB.t06-w0.5.mod
% Single Track Model: 2fh5A.t06-w0.5.mod
% Single Track Model: 1z1lA.t06-w0.5.mod
% Single Track Model: 1v73A.t06-w0.5.mod
% Single Track Model: 1shwB.t06-w0.5.mod
% Single Track Model: 1oyc.t06-w0.5.mod
% Single Track Model: 1xe0A.t06-w0.5.mod
% Single Track Model: 1yge.t06-w0.5.mod
% Single Track Model: 1ztdA.t06-w0.5.mod
% Single Track Model: 1wyuA.t06-w0.5.mod
% Single Track Model: 1wrjA.t06-w0.5.mod
% Single Track Model: 1pb6A.t06-w0.5.mod
% Single Track Model: 2fvtA.t06-w0.5.mod
% Single Track Model: 2c5rA.t06-w0.5.mod
% Single Track Model: 1u4bA.t06-w0.5.mod
% Single Track Model: 1p57A.t06-w0.5.mod
% Single Track Model: 1uptB.t06-w0.5.mod
% Single Track Model: 2guhA.t06-w0.5.mod
% Single Track Model: 1qmyA.t06-w0.5.mod
% Single Track Model: 1u7iA.t06-w0.5.mod
% Single Track Model: 1mqkH.t06-w0.5.mod
% Single Track Model: 2bgkA.t06-w0.5.mod
% Single Track Model: 1rm8A.t06-w0.5.mod
% Single Track Model: 1gkmA.t06-w0.5.mod
% Single Track Model: 1sy7A.t06-w0.5.mod
% Single Track Model: 1k38A.t06-w0.5.mod
% Single Track Model: 1hc9B.t06-w0.5.mod
% Single Track Model: 1bjt.t06-w0.5.mod
% Single Track Model: 1yxcA.t06-w0.5.mod
% Single Track Model: 1t4hA.t06-w0.5.mod
% Single Track Model: 1hgvA.t06-w0.5.mod
% Single Track Model: 1mtyD.t06-w0.5.mod
% Single Track Model: 1xmzA.t06-w0.5.mod
% Single Track Model: 1dcoA.t06-w0.5.mod
% Single Track Model: 1q45A.t06-w0.5.mod
% Single Track Model: 1o0yA.t06-w0.5.mod
% Single Track Model: 1neiA.t06-w0.5.mod
% Single Track Model: 1jqnA.t06-w0.5.mod
% Single Track Model: 1j6rA.t06-w0.5.mod
% Single Track Model: 1rxqA.t06-w0.5.mod
% Single Track Model: 1eokA.t06-w0.5.mod
% Single Track Model: 1m6kA.t06-w0.5.mod
% Single Track Model: 1tr0A.t06-w0.5.mod
% Single Track Model: 1uliB.t06-w0.5.mod
% Single Track Model: 1wmsA.t06-w0.5.mod
% Single Track Model: 1kdlA.t06-w0.5.mod
% Single Track Model: 1bg6.t06-w0.5.mod
% Single Track Model: 1vfrA.t06-w0.5.mod
% Single Track Model: 1tocR.t06-w0.5.mod
% Single Track Model: 1obbA.t06-w0.5.mod
% Single Track Model: 5cytR.t06-w0.5.mod
% Single Track Model: 2g0dA.t06-w0.5.mod
% Single Track Model: 1k8kA.t06-w0.5.mod
% Single Track Model: 1xrsA.t06-w0.5.mod
% Single Track Model: 1q0eA.t06-w0.5.mod
% Single Track Model: 1yz2A.t06-w0.5.mod
% Single Track Model: 1i52A.t06-w0.5.mod
% Single Track Model: 1xhdA.t06-w0.5.mod
% Single Track Model: 1omyA.t06-w0.5.mod
% Single Track Model: 1yukA.t06-w0.5.mod
% Single Track Model: 1d2vC.t06-w0.5.mod
% Single Track Model: 1wduA.t06-w0.5.mod
% Single Track Model: 1w32A.t06-w0.5.mod
% Single Track Model: 1fc4A.t06-w0.5.mod
% Single Track Model: 1bei.t06-w0.5.mod
% Single Track Model: 1x6iA.t06-w0.5.mod
% Single Track Model: 1qyiA.t06-w0.5.mod
% Single Track Model: 2tgi.t06-w0.5.mod
% Single Track Model: 1or4A.t06-w0.5.mod
% Single Track Model: 2fneA.t06-w0.5.mod
% Single Track Model: 2axtB.t06-w0.5.mod
% Single Track Model: 1k77A.t06-w0.5.mod
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% Single Track Model: 1srb.t06-w0.5.mod
% Single Track Model: 1rqjA.t06-w0.5.mod
% Single Track Model: 1loi.t06-w0.5.mod
% Single Track Model: 1twfL.t06-w0.5.mod
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% Single Track Model: 1u61A.t06-w0.5.mod
% Single Track Model: 1sffA.t06-w0.5.mod
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% Single Track Model: 1zetA.t06-w0.5.mod
% Single Track Model: 1sznA.t06-w0.5.mod
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% Single Track Model: 1a99A.t06-w0.5.mod
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% Single Track Model: 1fo8A.t06-w0.5.mod
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% Single Track Model: 1vjjA.t06-w0.5.mod
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% Single Track Model: 2cwkA.t06-w0.5.mod
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% Single Track Model: 1s1i0.t06-w0.5.mod
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% Single Track Model: 1mveA.t06-w0.5.mod
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% Single Track Model: 1qwzA.t06-w0.5.mod
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% Single Track Model: 1xvqA.t06-w0.5.mod
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% Single Track Model: 1azsA.t06-w0.5.mod
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% Single Track Model: 1gp8A.t06-w0.5.mod
% Single Track Model: 1c8nA.t06-w0.5.mod
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% Single Track Model: 2f5yA.t06-w0.5.mod
% Single Track Model: 1y89A.t06-w0.5.mod
% Single Track Model: 2flyA.t06-w0.5.mod
% Single Track Model: 1x3aA.t06-w0.5.mod
% Single Track Model: 1rzl.t06-w0.5.mod
% Single Track Model: 2fl7A.t06-w0.5.mod
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% Single Track Model: 1sxm.t06-w0.5.mod
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% Single Track Model: 1gp0A.t06-w0.5.mod
% Single Track Model: 1eylA.t06-w0.5.mod
% Single Track Model: 3thiA.t06-w0.5.mod
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% Single Track Model: 1uglA.t06-w0.5.mod
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% Single Track Model: 1f9yA.t06-w0.5.mod
% Single Track Model: 1wvvA.t06-w0.5.mod
% Single Track Model: 1ayaA.t06-w0.5.mod
% Single Track Model: 3ezmA.t06-w0.5.mod
% Single Track Model: 1c6vX.t06-w0.5.mod
% Single Track Model: 1fl0A.t06-w0.5.mod
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% Single Track Model: 2awgA.t06-w0.5.mod
% Single Track Model: 1ewfA.t06-w0.5.mod
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% Single Track Model: 1i0lA.t06-w0.5.mod
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% Single Track Model: 1tuoA.t06-w0.5.mod
% Single Track Model: 1jfuA.t06-w0.5.mod
% Single Track Model: 1yna.t06-w0.5.mod
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% Single Track Model: 1u02A.t06-w0.5.mod
% Single Track Model: 1div.t06-w0.5.mod
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% Single Track Model: 1winA.t06-w0.5.mod
% Single Track Model: 1d7qA.t06-w0.5.mod
% Single Track Model: 1t2yA.t06-w0.5.mod
% Single Track Model: 1c7nA.t06-w0.5.mod
% Single Track Model: 1wl8A.t06-w0.5.mod
% Single Track Model: 1e4mM.t06-w0.5.mod
% Single Track Model: 1azo.t06-w0.5.mod
% Single Track Model: 1b4bA.t06-w0.5.mod
% Single Track Model: 1rp4A.t06-w0.5.mod
% Single Track Model: 1fmb.t06-w0.5.mod
% Single Track Model: 1ej6D.t06-w0.5.mod
% Single Track Model: 1ykuA.t06-w0.5.mod
% Single Track Model: 1j79A.t06-w0.5.mod
% Single Track Model: 1okgA.t06-w0.5.mod
% Single Track Model: 1bkb.t06-w0.5.mod
% Single Track Model: 1t4nA.t06-w0.5.mod
% Single Track Model: 1rkqA.t06-w0.5.mod
% Single Track Model: 1vqoO.t06-w0.5.mod
% Single Track Model: 1paqA.t06-w0.5.mod
% Single Track Model: 1z6mA.t06-w0.5.mod
% Single Track Model: 1inp.t06-w0.5.mod
% Single Track Model: 1khqA.t06-w0.5.mod
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% Single Track Model: 1avbA.t06-w0.5.mod
% Single Track Model: 2bc4B.t06-w0.5.mod
% Single Track Model: 1b63A.t06-w0.5.mod
% Single Track Model: 1dxgA.t06-w0.5.mod
% Single Track Model: 1zg2A.t06-w0.5.mod
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% Single Track Model: 1tksA.t06-w0.5.mod
% Single Track Model: 1qf5A.t06-w0.5.mod
% Single Track Model: 1o5kA.t06-w0.5.mod
% Single Track Model: 1m56D.t06-w0.5.mod
% Single Track Model: 2bvlA.t06-w0.5.mod
% Single Track Model: 1umnA.t06-w0.5.mod
% Single Track Model: 1udh.t06-w0.5.mod
% Single Track Model: 1nezG.t06-w0.5.mod
% Single Track Model: 1xioA.t06-w0.5.mod
% Single Track Model: 1q9bA.t06-w0.5.mod
% Single Track Model: 1qeyA.t06-w0.5.mod
% Single Track Model: 1e6yA.t06-w0.5.mod
% Single Track Model: 1jsdA.t06-w0.5.mod
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% Single Track Model: 1s7mA.t06-w0.5.mod
% Single Track Model: 1rkbA.t06-w0.5.mod
% Single Track Model: 1o7fA.t06-w0.5.mod
% Single Track Model: 2axyA.t06-w0.5.mod
% Single Track Model: 1gouA.t06-w0.5.mod
% Single Track Model: 1j1iA.t06-w0.5.mod
% Single Track Model: 1k5dB.t06-w0.5.mod
% Single Track Model: 1jihA.t06-w0.5.mod
% Single Track Model: 1oaqH.t06-w0.5.mod
% Single Track Model: 1vhxA.t06-w0.5.mod
% Single Track Model: 1yzvA.t06-w0.5.mod
% Single Track Model: 1t2dA.t06-w0.5.mod
% Single Track Model: 1cczA.t06-w0.5.mod
% Single Track Model: 1y02A.t06-w0.5.mod
% Single Track Model: 1ujcA.t06-w0.5.mod
% Single Track Model: 1urrA.t06-w0.5.mod
% Single Track Model: 1dowB.t06-w0.5.mod
% Single Track Model: 1jc9A.t06-w0.5.mod
% Single Track Model: 1mjfA.t06-w0.5.mod
% Single Track Model: 1ovnA.t06-w0.5.mod
% Single Track Model: 1dxeA.t06-w0.5.mod
% Single Track Model: 1g1jA.t06-w0.5.mod
% Single Track Model: 1ym5A.t06-w0.5.mod
% Single Track Model: 1mngA.t06-w0.5.mod
% Single Track Model: 1z5zA.t06-w0.5.mod
% Single Track Model: 1xkrA.t06-w0.5.mod
% Single Track Model: 1cjaA.t06-w0.5.mod
% Single Track Model: 1jb3A.t06-w0.5.mod
% Single Track Model: 1uasA.t06-w0.5.mod
% Single Track Model: 1ulyA.t06-w0.5.mod
% Single Track Model: 1rds.t06-w0.5.mod
% Single Track Model: 1yemA.t06-w0.5.mod
% Single Track Model: 2chnA.t06-w0.5.mod
% Single Track Model: 1vhyA.t06-w0.5.mod
% Single Track Model: 1ti6A.t06-w0.5.mod
% Single Track Model: 1bli.t06-w0.5.mod
% Single Track Model: 2fr1A.t06-w0.5.mod
% Single Track Model: 2f15A.t06-w0.5.mod
% Single Track Model: 1nkpA.t06-w0.5.mod
% Single Track Model: 2biqA.t06-w0.5.mod
% Single Track Model: 1pmmA.t06-w0.5.mod
% Single Track Model: 1iw0A.t06-w0.5.mod
% Single Track Model: 2irfG.t06-w0.5.mod
% Single Track Model: 1qwlA.t06-w0.5.mod
% Single Track Model: 1s68A.t06-w0.5.mod
% Single Track Model: 1o6sB.t06-w0.5.mod
% Single Track Model: 1g8kA.t06-w0.5.mod
% Single Track Model: 1k12A.t06-w0.5.mod
% Single Track Model: 1hziA.t06-w0.5.mod
% Single Track Model: 2ey4C.t06-w0.5.mod
% Single Track Model: 1lyp.t06-w0.5.mod
% Single Track Model: 1d5yA.t06-w0.5.mod
% Single Track Model: 1r9hA.t06-w0.5.mod
% Single Track Model: 1l0bA.t06-w0.5.mod
% Single Track Model: 1rypK.t06-w0.5.mod
% Single Track Model: 1bgf.t06-w0.5.mod
% Single Track Model: 2b3gA.t06-w0.5.mod
% Single Track Model: 1vqo1.t06-w0.5.mod
% Single Track Model: 1e9kA.t06-w0.5.mod
% Single Track Model: 1cdy.t06-w0.5.mod
% Single Track Model: 1eu1A.t06-w0.5.mod
% Single Track Model: 1ufaA.t06-w0.5.mod
% Single Track Model: 1y66A.t06-w0.5.mod
% Single Track Model: 1wqbA.t06-w0.5.mod
% Single Track Model: 1yzyA.t06-w0.5.mod
% Single Track Model: 1wdpA.t06-w0.5.mod
% Single Track Model: 1vqoB.t06-w0.5.mod
% Single Track Model: 1szhA.t06-w0.5.mod
% Single Track Model: 2d2sA.t06-w0.5.mod
% Single Track Model: 2apr.t06-w0.5.mod
% Single Track Model: 2lhb.t06-w0.5.mod
% Single Track Model: 1kkoA.t06-w0.5.mod
% Single Track Model: 2axtT.t06-w0.5.mod
% Single Track Model: 1pcfA.t06-w0.5.mod
% Single Track Model: 2a7kA.t06-w0.5.mod
% Single Track Model: 1r17A.t06-w0.5.mod
% Single Track Model: 1sqgA.t06-w0.5.mod
% Single Track Model: 2bsjA.t06-w0.5.mod
% Single Track Model: 1i4yA.t06-w0.5.mod
% Single Track Model: 1z4hA.t06-w0.5.mod
% Single Track Model: 3eipA.t06-w0.5.mod
% Single Track Model: 1jtdB.t06-w0.5.mod
% Single Track Model: 1ihjA.t06-w0.5.mod
% Single Track Model: 1xuuA.t06-w0.5.mod
% Single Track Model: 1y0bA.t06-w0.5.mod
% Single Track Model: 1zarA.t06-w0.5.mod
% Single Track Model: 1p9kA.t06-w0.5.mod
% Single Track Model: 1g3p.t06-w0.5.mod
% Single Track Model: 1vdwA.t06-w0.5.mod
% Single Track Model: 1zdyA.t06-w0.5.mod
% Single Track Model: 1q4gA.t06-w0.5.mod
% Single Track Model: 1x1zA.t06-w0.5.mod
% Single Track Model: 1snzA.t06-w0.5.mod
% Single Track Model: 1qmhA.t06-w0.5.mod
% Single Track Model: 1g1pA.t06-w0.5.mod
% Single Track Model: 1xipA.t06-w0.5.mod
% Single Track Model: 1gd2E.t06-w0.5.mod
% Single Track Model: 2hntE.t06-w0.5.mod
% Single Track Model: 1xm7A.t06-w0.5.mod
% Single Track Model: 1t0yA.t06-w0.5.mod
% Single Track Model: 1v7zA.t06-w0.5.mod
% Single Track Model: 1ok0A.t06-w0.5.mod
% Single Track Model: 1yq5A.t06-w0.5.mod
% Single Track Model: 1kb0A.t06-w0.5.mod
% Single Track Model: 1epfA.t06-w0.5.mod
% Single Track Model: 1ufkA.t06-w0.5.mod
% Single Track Model: 1jr2A.t06-w0.5.mod
% Single Track Model: 1xebA.t06-w0.5.mod
% Single Track Model: 1f94A.t06-w0.5.mod
% Single Track Model: 1l1oC.t06-w0.5.mod
% Single Track Model: 1rw1A.t06-w0.5.mod
% Single Track Model: 1sfxA.t06-w0.5.mod
% Single Track Model: 2azpA.t06-w0.5.mod
% Single Track Model: 1f32A.t06-w0.5.mod
% Single Track Model: 1z6oA.t06-w0.5.mod
% Single Track Model: 1mzwB.t06-w0.5.mod
% Single Track Model: 1as4B.t06-w0.5.mod
% Single Track Model: 1v25A.t06-w0.5.mod
% Single Track Model: 2f62A.t06-w0.5.mod
% Single Track Model: 1vloA.t06-w0.5.mod
% Single Track Model: 2rhe.t06-w0.5.mod
% Single Track Model: 1jkeA.t06-w0.5.mod
% Single Track Model: 1hw7A.t06-w0.5.mod
% Single Track Model: 2gdm.t06-w0.5.mod
% Single Track Model: 1lupA.t06-w0.5.mod
% Single Track Model: 1nd4A.t06-w0.5.mod
% Single Track Model: 1w2wB.t06-w0.5.mod
% Single Track Model: 1b93A.t06-w0.5.mod
% Single Track Model: 2amdA.t06-w0.5.mod
% Single Track Model: 2f6rA.t06-w0.5.mod
% Single Track Model: 1cqyA.t06-w0.5.mod
% Single Track Model: 1efnB.t06-w0.5.mod
% Single Track Model: 1dlwA.t06-w0.5.mod
% Single Track Model: 1lt8A.t06-w0.5.mod
% Single Track Model: 1ixh.t06-w0.5.mod
% Single Track Model: 1o7sA.t06-w0.5.mod
% Single Track Model: 1zkpA.t06-w0.5.mod
% Single Track Model: 1pzgA.t06-w0.5.mod
% Single Track Model: 1z0wA.t06-w0.5.mod
% Single Track Model: 1yg2A.t06-w0.5.mod
% Single Track Model: 2gk4A.t06-w0.5.mod
% Single Track Model: 1km4A.t06-w0.5.mod
% Single Track Model: 1kwfA.t06-w0.5.mod
% Single Track Model: 1d7uA.t06-w0.5.mod
% Single Track Model: 1gc0A.t06-w0.5.mod
% Single Track Model: 1fp3A.t06-w0.5.mod
% Single Track Model: 1fcdA.t06-w0.5.mod
% Single Track Model: 1vr4A.t06-w0.5.mod
% Single Track Model: 1svdA.t06-w0.5.mod
% Single Track Model: 2cvdA.t06-w0.5.mod
% Single Track Model: 1uuhA.t06-w0.5.mod
% Single Track Model: 1u79A.t06-w0.5.mod
% Single Track Model: 1alu.t06-w0.5.mod
% Single Track Model: 1yn3A.t06-w0.5.mod
% Single Track Model: 1x82A.t06-w0.5.mod
% Single Track Model: 1u7nA.t06-w0.5.mod
% Single Track Model: 1qgoA.t06-w0.5.mod
% Single Track Model: 1ro7A.t06-w0.5.mod
% Single Track Model: 1uj2A.t06-w0.5.mod
% Single Track Model: 1l7aA.t06-w0.5.mod
% Single Track Model: 1bi6H.t06-w0.5.mod
% Single Track Model: 1qdp.t06-w0.5.mod
% Single Track Model: 1iybA.t06-w0.5.mod
% Single Track Model: 1ae9A.t06-w0.5.mod
% Single Track Model: 1vckA.t06-w0.5.mod
% Single Track Model: 1o6vA.t06-w0.5.mod
% Single Track Model: 1yu0A.t06-w0.5.mod
% Single Track Model: 1dcjA.t06-w0.5.mod
% Single Track Model: 1fx2A.t06-w0.5.mod
% Single Track Model: 1ugxA.t06-w0.5.mod
% Single Track Model: 1zowA.t06-w0.5.mod
% Single Track Model: 1wvqA.t06-w0.5.mod
% Single Track Model: 1ugpB.t06-w0.5.mod
% Single Track Model: 1kb9B.t06-w0.5.mod
% Single Track Model: 1mjnA.t06-w0.5.mod
% Single Track Model: 1qg9A.t06-w0.5.mod
% Single Track Model: 1zlqA.t06-w0.5.mod
% Single Track Model: 1xnzA.t06-w0.5.mod
% Single Track Model: 1vzqH.t06-w0.5.mod
% Single Track Model: 1k8kE.t06-w0.5.mod
% Single Track Model: 2ftuA.t06-w0.5.mod
% Single Track Model: 2f91A.t06-w0.5.mod
% Single Track Model: 1u20A.t06-w0.5.mod
% Single Track Model: 2ga9A.t06-w0.5.mod
% Single Track Model: 1v71A.t06-w0.5.mod
% Single Track Model: 1on2A.t06-w0.5.mod
% Single Track Model: 1f4sP.t06-w0.5.mod
% Single Track Model: 1ohpA.t06-w0.5.mod
% Single Track Model: 1f4pA.t06-w0.5.mod
% Single Track Model: 1fjgK.t06-w0.5.mod
% Single Track Model: 1gpmA.t06-w0.5.mod
% Single Track Model: 1a4pA.t06-w0.5.mod
% Single Track Model: 1uekA.t06-w0.5.mod
% Single Track Model: 1lfdA.t06-w0.5.mod
% Single Track Model: 2bf5A.t06-w0.5.mod
% Single Track Model: 2b5gA.t06-w0.5.mod
% Single Track Model: 1g2rA.t06-w0.5.mod
% Single Track Model: 1ym0A.t06-w0.5.mod
% Single Track Model: 1r7cA.t06-w0.5.mod
% Single Track Model: 1ma3A.t06-w0.5.mod
% Single Track Model: 1rb9.t06-w0.5.mod
% Single Track Model: 1vjfA.t06-w0.5.mod
% Single Track Model: 1yb5A.t06-w0.5.mod
% Single Track Model: 1qexA.t06-w0.5.mod
% Single Track Model: 1t7rA.t06-w0.5.mod
% Single Track Model: 1f15A.t06-w0.5.mod
% Single Track Model: 1utaA.t06-w0.5.mod
% Single Track Model: 2fexA.t06-w0.5.mod
% Single Track Model: 1szwA.t06-w0.5.mod
% Single Track Model: 1x6mA.t06-w0.5.mod
% Single Track Model: 1lml.t06-w0.5.mod
% Single Track Model: 1ed7A.t06-w0.5.mod
% Single Track Model: 1pxvA.t06-w0.5.mod
% Single Track Model: 1fyhB.t06-w0.5.mod
% Single Track Model: 1oxwA.t06-w0.5.mod
% Single Track Model: 1useA.t06-w0.5.mod
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% Single Track Model: 2etxA.t06-w0.5.mod
% Single Track Model: 1zosA.t06-w0.5.mod
% Single Track Model: 1cydA.t06-w0.5.mod
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% Single Track Model: 1j5pA.t06-w0.5.mod
% Single Track Model: 1jmtB.t06-w0.5.mod
% Single Track Model: 1augA.t06-w0.5.mod
% Single Track Model: 1td4A.t06-w0.5.mod
% Single Track Model: 1k47A.t06-w0.5.mod
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% Single Track Model: 2spcA.t06-w0.5.mod
% Single Track Model: 1id0A.t06-w0.5.mod
% Single Track Model: 1mr3F.t06-w0.5.mod
% Single Track Model: 1na6A.t06-w0.5.mod
% Single Track Model: 1np7A.t06-w0.5.mod
% Single Track Model: 1fmjA.t06-w0.5.mod
% Single Track Model: 1lf6A.t06-w0.5.mod
% Single Track Model: 1sefA.t06-w0.5.mod
% Single Track Model: 2gtqA.t06-w0.5.mod
% Single Track Model: 1u9lA.t06-w0.5.mod
% Single Track Model: 1w2tA.t06-w0.5.mod
% Single Track Model: 1bf6A.t06-w0.5.mod
% Single Track Model: 2fy6A.t06-w0.5.mod
% Single Track Model: 1s3zA.t06-w0.5.mod
% Single Track Model: 1cpcB.t06-w0.5.mod
% Single Track Model: 1pe1A.t06-w0.5.mod
% Single Track Model: 1ve6A.t06-w0.5.mod
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% Single Track Model: 1p0yA.t06-w0.5.mod
% Single Track Model: 1a2pA.t06-w0.5.mod
% Single Track Model: 1bia.t06-w0.5.mod
% Single Track Model: 1fn9A.t06-w0.5.mod
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% Single Track Model: 1ic2A.t06-w0.5.mod
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% Single Track Model: 1a0tP.t06-w0.5.mod
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% Single Track Model: 1e9rA.t06-w0.5.mod
% Single Track Model: 1enwA.t06-w0.5.mod
% Single Track Model: 2fnaA.t06-w0.5.mod
% Single Track Model: 1nt2A.t06-w0.5.mod
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% Single Track Model: 1uptA.t06-w0.5.mod
% Single Track Model: 2ffeA.t06-w0.5.mod
% Single Track Model: 2cro.t06-w0.5.mod
% Single Track Model: 1mjuH.t06-w0.5.mod
% Single Track Model: 1ont.t06-w0.5.mod
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% Single Track Model: 1l6pA.t06-w0.5.mod
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% Single Track Model: 2fp4B.t06-w0.5.mod
% Single Track Model: 2f4lA.t06-w0.5.mod
% Single Track Model: 1u8vA.t06-w0.5.mod
% Single Track Model: 1segA.t06-w0.5.mod
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% Single Track Model: 1r5mA.t06-w0.5.mod
% Single Track Model: 1b9oA.t06-w0.5.mod
% Single Track Model: 1tjxA.t06-w0.5.mod
% Single Track Model: 2fg1A.t06-w0.5.mod
% Single Track Model: 1wxcB.t06-w0.5.mod
% Single Track Model: 1naqA.t06-w0.5.mod
% Single Track Model: 2cujA.t06-w0.5.mod
% Single Track Model: 1vl4A.t06-w0.5.mod
% Single Track Model: 1j2rA.t06-w0.5.mod
% Single Track Model: 1yw5A.t06-w0.5.mod
% Single Track Model: 1kg0C.t06-w0.5.mod
% Single Track Model: 1lkoA.t06-w0.5.mod
% Single Track Model: 2d0oB.t06-w0.5.mod
% Single Track Model: 1wn8A.t06-w0.5.mod
% Single Track Model: 1vmfA.t06-w0.5.mod
% Single Track Model: 1sz7A.t06-w0.5.mod
% Single Track Model: 2gujA.t06-w0.5.mod
% Single Track Model: 2avuE.t06-w0.5.mod
% Single Track Model: 1rmg.t06-w0.5.mod
% Single Track Model: 1v54B.t06-w0.5.mod
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% Single Track Model: 2a8yA.t06-w0.5.mod
% Single Track Model: 1i4mA.t06-w0.5.mod
% Single Track Model: 1qopA.t06-w0.5.mod
% Single Track Model: 1rf3B.t06-w0.5.mod
% Single Track Model: 1pmzA.t06-w0.5.mod
% Single Track Model: 1nrjB.t06-w0.5.mod
% Single Track Model: 1eybA.t06-w0.5.mod
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% Single Track Model: 1xfhA.t06-w0.5.mod
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% Single Track Model: 1j1nA.t06-w0.5.mod
% Single Track Model: 1jmxB.t06-w0.5.mod
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% Single Track Model: 1g6aA.t06-w0.5.mod
% Single Track Model: 1twfI.t06-w0.5.mod
% Single Track Model: 1za7A.t06-w0.5.mod
% Single Track Model: 1us5A.t06-w0.5.mod
% Single Track Model: 1ykhB.t06-w0.5.mod
% Single Track Model: 1n62B.t06-w0.5.mod
% Single Track Model: 1dugA.t06-w0.5.mod
% Single Track Model: 1opjA.t06-w0.5.mod
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% Single Track Model: 1jljA.t06-w0.5.mod
% Single Track Model: 2cdpA.t06-w0.5.mod
% Single Track Model: 1gxyA.t06-w0.5.mod
% Single Track Model: 1uylA.t06-w0.5.mod
% Single Track Model: 1xv5A.t06-w0.5.mod
% Single Track Model: 1nhcA.t06-w0.5.mod
% Single Track Model: 1wkaA.t06-w0.5.mod
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% Single Track Model: 1k6kA.t06-w0.5.mod
% Single Track Model: 1o58A.t06-w0.5.mod
% Single Track Model: 1r9iA.t06-w0.5.mod
% Single Track Model: 1t3iA.t06-w0.5.mod
% Single Track Model: 2fiqA.t06-w0.5.mod
% Single Track Model: 1g94A.t06-w0.5.mod
% Single Track Model: 1j8bA.t06-w0.5.mod
% Single Track Model: 1fjgT.t06-w0.5.mod
% Single Track Model: 2aibA.t06-w0.5.mod
% Single Track Model: 2fi9A.t06-w0.5.mod
% Single Track Model: 1yakA.t06-w0.5.mod
% Single Track Model: 2f66C.t06-w0.5.mod
% Single Track Model: 2bmoA.t06-w0.5.mod
% Single Track Model: 2d0iA.t06-w0.5.mod
% Single Track Model: 1v8dA.t06-w0.5.mod
% Single Track Model: 1i1nA.t06-w0.5.mod
% Single Track Model: 2rspA.t06-w0.5.mod
% Single Track Model: 1wv3A.t06-w0.5.mod
% Single Track Model: 1sl4A.t06-w0.5.mod
% Single Track Model: 1rlzA.t06-w0.5.mod
% Single Track Model: 1to2I.t06-w0.5.mod
% Single Track Model: 1es5A.t06-w0.5.mod
% Single Track Model: 1npuA.t06-w0.5.mod
% Single Track Model: 1wd2A.t06-w0.5.mod
% Single Track Model: 1k2xB.t06-w0.5.mod
% Single Track Model: 1m7yA.t06-w0.5.mod
% Single Track Model: 1uk8A.t06-w0.5.mod
% Single Track Model: 1kopA.t06-w0.5.mod
% Single Track Model: 1fs0G.t06-w0.5.mod
% Single Track Model: 1j4aA.t06-w0.5.mod
% Single Track Model: 1iscA.t06-w0.5.mod
% Single Track Model: 2b20A.t06-w0.5.mod
% Single Track Model: 1ugnA.t06-w0.5.mod
% Single Track Model: 1su0B.t06-w0.5.mod
% Single Track Model: 2d1pC.t06-w0.5.mod
% Single Track Model: 1qoyA.t06-w0.5.mod
% Single Track Model: 1fvuB.t06-w0.5.mod
% Single Track Model: 1ojrA.t06-w0.5.mod
% Single Track Model: 1dszB.t06-w0.5.mod
% Single Track Model: 1k8kB.t06-w0.5.mod
% Single Track Model: 1vh5A.t06-w0.5.mod
% Single Track Model: 2bbeA.t06-w0.5.mod
% Single Track Model: 1mx3A.t06-w0.5.mod
% Single Track Model: 1txvA.t06-w0.5.mod
% Single Track Model: 1rypB.t06-w0.5.mod
% Single Track Model: 1agt.t06-w0.5.mod
% Single Track Model: 2fa8A.t06-w0.5.mod
% Single Track Model: 1s8kA.t06-w0.5.mod
% Single Track Model: 1dmhA.t06-w0.5.mod
% Single Track Model: 1qy1A.t06-w0.5.mod
% Single Track Model: 1bf5A.t06-w0.5.mod
% Single Track Model: 1nkzA.t06-w0.5.mod
% Single Track Model: 1hj9A.t06-w0.5.mod
% Single Track Model: 1lvaA.t06-w0.5.mod
% Single Track Model: 1jr7A.t06-w0.5.mod
% Single Track Model: 1svsA.t06-w0.5.mod
% Single Track Model: 2f02A.t06-w0.5.mod
% Single Track Model: 1wnyA.t06-w0.5.mod
% Single Track Model: 1l0wA.t06-w0.5.mod
% Single Track Model: 1f3lA.t06-w0.5.mod
% Single Track Model: 2c1xA.t06-w0.5.mod
% Single Track Model: 2b9dA.t06-w0.5.mod
% Single Track Model: 1gcqC.t06-w0.5.mod
% Single Track Model: 1up7A.t06-w0.5.mod
% Single Track Model: 1kcp.t06-w0.5.mod
% Single Track Model: 1nr0A.t06-w0.5.mod
% Single Track Model: 1sb2A.t06-w0.5.mod
% Single Track Model: 1vyrA.t06-w0.5.mod
% Single Track Model: 1xnfA.t06-w0.5.mod
% Single Track Model: 1nlnA.t06-w0.5.mod
% Single Track Model: 1cf7B.t06-w0.5.mod
% Single Track Model: 1kv4A.t06-w0.5.mod
% Single Track Model: 2b0lA.t06-w0.5.mod
% Single Track Model: 1xpmA.t06-w0.5.mod
% Single Track Model: 1lcyA.t06-w0.5.mod
% Single Track Model: 1wmgA.t06-w0.5.mod
% Single Track Model: 1uedA.t06-w0.5.mod
% Single Track Model: 1dusA.t06-w0.5.mod
% Single Track Model: 2bayA.t06-w0.5.mod
% Single Track Model: 1q90L.t06-w0.5.mod
% Single Track Model: 1viaA.t06-w0.5.mod
% Single Track Model: 1faaA.t06-w0.5.mod
% Single Track Model: 7taa.t06-w0.5.mod
% Single Track Model: 1mexL.t06-w0.5.mod
% Single Track Model: 1m12A.t06-w0.5.mod
% Single Track Model: 2acy.t06-w0.5.mod
% Single Track Model: 1c3pA.t06-w0.5.mod
% Single Track Model: 2dkaA.t06-w0.5.mod
% Single Track Model: 1jogA.t06-w0.5.mod
% Single Track Model: 2f46A.t06-w0.5.mod
% Single Track Model: 1ou0A.t06-w0.5.mod
% Single Track Model: 1w6gA.t06-w0.5.mod
% Single Track Model: 2grrB.t06-w0.5.mod
% Single Track Model: 1xaoA.t06-w0.5.mod
% Single Track Model: 1vd7A.t06-w0.5.mod
% Single Track Model: 1junA.t06-w0.5.mod
% Single Track Model: 2fhzA.t06-w0.5.mod
% Single Track Model: 1gqvA.t06-w0.5.mod
% Single Track Model: 2a6vA.t06-w0.5.mod
% Single Track Model: 1ybiA.t06-w0.5.mod
% Single Track Model: 1i5pA.t06-w0.5.mod
% Single Track Model: 2oatA.t06-w0.5.mod
% Single Track Model: 1hr6A.t06-w0.5.mod
% Single Track Model: 1nj3A.t06-w0.5.mod
% Single Track Model: 2cbiA.t06-w0.5.mod
% Single Track Model: 1qtoA.t06-w0.5.mod
% Single Track Model: 1zmqA.t06-w0.5.mod
% Single Track Model: 2c5kP.t06-w0.5.mod
% Single Track Model: 1vjhA.t06-w0.5.mod
% Single Track Model: 2a1rA.t06-w0.5.mod
% Single Track Model: 1dqcA.t06-w0.5.mod
% Single Track Model: 1cuoA.t06-w0.5.mod
% Single Track Model: 1dtdA.t06-w0.5.mod
% Single Track Model: 2bce.t06-w0.5.mod
% Single Track Model: 1dxjA.t06-w0.5.mod
% Single Track Model: 1wpiA.t06-w0.5.mod
% Single Track Model: 1qw9A.t06-w0.5.mod
% Single Track Model: 1dpqA.t06-w0.5.mod
% Single Track Model: 1ulkA.t06-w0.5.mod
% Single Track Model: 1zuoA.t06-w0.5.mod
% Single Track Model: 1mb3A.t06-w0.5.mod
% Single Track Model: 1zt2B.t06-w0.5.mod
% Single Track Model: 1e0eA.t06-w0.5.mod
% Single Track Model: 1aoy.t06-w0.5.mod
% Single Track Model: 1mixA.t06-w0.5.mod
% Single Track Model: 1sr4C.t06-w0.5.mod
% Single Track Model: 1uc2A.t06-w0.5.mod
% Single Track Model: 1aisB.t06-w0.5.mod
% Single Track Model: 1dj7B.t06-w0.5.mod
% Single Track Model: 1yw3A.t06-w0.5.mod
% Single Track Model: 1mi3A.t06-w0.5.mod
% Single Track Model: 1q2fA.t06-w0.5.mod
% Single Track Model: 1ihuA.t06-w0.5.mod
% Single Track Model: 1r0rI.t06-w0.5.mod
% Single Track Model: 1zbpA.t06-w0.5.mod
% Single Track Model: 1z96A.t06-w0.5.mod
% Single Track Model: 1u9iA.t06-w0.5.mod
% Single Track Model: 1e7wA.t06-w0.5.mod
% Single Track Model: 1jb0E.t06-w0.5.mod
% Single Track Model: 2c8sA.t06-w0.5.mod
% Single Track Model: 1fpzA.t06-w0.5.mod
% Single Track Model: 1t61A.t06-w0.5.mod
% Single Track Model: 1vflA.t06-w0.5.mod
% Single Track Model: 1zmmA.t06-w0.5.mod
% Single Track Model: 2f1fA.t06-w0.5.mod
% Single Track Model: 1lr5A.t06-w0.5.mod
% Single Track Model: 1srkA.t06-w0.5.mod
% Single Track Model: 1kv0A.t06-w0.5.mod
% Single Track Model: 1jzgA.t06-w0.5.mod
% Single Track Model: 1ldjA.t06-w0.5.mod
% Single Track Model: 1zud2.t06-w0.5.mod
% Single Track Model: 2fojA.t06-w0.5.mod
% Single Track Model: 1zzmA.t06-w0.5.mod
% Single Track Model: 1wlqC.t06-w0.5.mod
% Single Track Model: 1hq8A.t06-w0.5.mod
% Single Track Model: 2bvfA.t06-w0.5.mod
% Single Track Model: 1by0A.t06-w0.5.mod
% Single Track Model: 1ry6A.t06-w0.5.mod
% Single Track Model: 1yrcA.t06-w0.5.mod
% Single Track Model: 1fiqC.t06-w0.5.mod
% Single Track Model: 1b9wA.t06-w0.5.mod
% Single Track Model: 1di6A.t06-w0.5.mod
% Single Track Model: 1b0b.t06-w0.5.mod
% Single Track Model: 1gngX.t06-w0.5.mod
% Single Track Model: 1n7sC.t06-w0.5.mod
% Single Track Model: 1jfrA.t06-w0.5.mod
% Single Track Model: 1jy2O.t06-w0.5.mod
% Single Track Model: 1x0vA.t06-w0.5.mod
% Single Track Model: 1anf.t06-w0.5.mod
% Single Track Model: 2essA.t06-w0.5.mod
% Single Track Model: 1u5dA.t06-w0.5.mod
% Single Track Model: 1qhoA.t06-w0.5.mod
% Single Track Model: 1p3cA.t06-w0.5.mod
% Single Track Model: 1yacA.t06-w0.5.mod
% Single Track Model: 2brqA.t06-w0.5.mod
% Single Track Model: 1xu1R.t06-w0.5.mod
% Single Track Model: 1jk0B.t06-w0.5.mod
% Single Track Model: 1bbhA.t06-w0.5.mod
% Single Track Model: 1h4vB.t06-w0.5.mod
% Single Track Model: 1b35D.t06-w0.5.mod
% Single Track Model: 2f8mA.t06-w0.5.mod
% Single Track Model: 1y7jA.t06-w0.5.mod
% Single Track Model: 1s9kD.t06-w0.5.mod
% Single Track Model: 1rr7A.t06-w0.5.mod
% Single Track Model: 1r3dA.t06-w0.5.mod
% Single Track Model: 1izoA.t06-w0.5.mod
% Single Track Model: 1tazA.t06-w0.5.mod
% Single Track Model: 1ofdA.t06-w0.5.mod
% Single Track Model: 1lfwA.t06-w0.5.mod
% Single Track Model: 7odcA.t06-w0.5.mod
% Single Track Model: 1k1aA.t06-w0.5.mod
% Single Track Model: 1khyA.t06-w0.5.mod
% Single Track Model: 1mtzA.t06-w0.5.mod
% Single Track Model: 1oeyA.t06-w0.5.mod
% Single Track Model: 1zuwA.t06-w0.5.mod
% Single Track Model: 1yduA.t06-w0.5.mod
% Single Track Model: 1bdfA.t06-w0.5.mod
% Single Track Model: 2aplA.t06-w0.5.mod
% Single Track Model: 1xx1A.t06-w0.5.mod
% Single Track Model: 1yvrA.t06-w0.5.mod
% Single Track Model: 1q6uA.t06-w0.5.mod
% Single Track Model: 1ub0A.t06-w0.5.mod
% Single Track Model: 2a6qA.t06-w0.5.mod
% Single Track Model: 1b34B.t06-w0.5.mod
% Single Track Model: 1yp8A.t06-w0.5.mod
% Single Track Model: 2fqpA.t06-w0.5.mod
% Single Track Model: 1jbiA.t06-w0.5.mod
% Single Track Model: 1xzzA.t06-w0.5.mod
% Single Track Model: 1ws8A.t06-w0.5.mod
% Single Track Model: 1d2oA.t06-w0.5.mod
% Single Track Model: 1byyA.t06-w0.5.mod
% Single Track Model: 2b2nA.t06-w0.5.mod
% Single Track Model: 1srqA.t06-w0.5.mod
% Single Track Model: 1hpgA.t06-w0.5.mod
% Single Track Model: 2aj7A.t06-w0.5.mod
% Single Track Model: 1yd0A.t06-w0.5.mod
% Single Track Model: 1tdzA.t06-w0.5.mod
% Single Track Model: 1vpsA.t06-w0.5.mod
% Single Track Model: 1if1A.t06-w0.5.mod
% Single Track Model: 1jboB.t06-w0.5.mod
% Single Track Model: 1bc5A.t06-w0.5.mod
% Single Track Model: 1f0nA.t06-w0.5.mod
% Single Track Model: 1p9eA.t06-w0.5.mod
% Single Track Model: 1a9xA.t06-w0.5.mod
% Single Track Model: 1xpcA.t06-w0.5.mod
% Single Track Model: 1r5rA.t06-w0.5.mod
% Single Track Model: 1kzqA.t06-w0.5.mod
% Single Track Model: 2b3wA.t06-w0.5.mod
% Single Track Model: 1m1nB.t06-w0.5.mod
% Single Track Model: 1br9.t06-w0.5.mod
% Single Track Model: 1ewkA.t06-w0.5.mod
% Single Track Model: 1tv0A.t06-w0.5.mod
% Single Track Model: 1iirA.t06-w0.5.mod
% Single Track Model: 1qw2A.t06-w0.5.mod
% Single Track Model: 1xeaA.t06-w0.5.mod
% Single Track Model: 1cq0A.t06-w0.5.mod
% Single Track Model: 1v54D.t06-w0.5.mod
% Single Track Model: 1wrdA.t06-w0.5.mod
% Single Track Model: 1php.t06-w0.5.mod
% Single Track Model: 1np3A.t06-w0.5.mod
% Single Track Model: 2ezh.t06-w0.5.mod
% Single Track Model: 2fb5A.t06-w0.5.mod
% Single Track Model: 1wh0A.t06-w0.5.mod
% Single Track Model: 2fhpA.t06-w0.5.mod
% Single Track Model: 1x6zA.t06-w0.5.mod
% Single Track Model: 1wwzA.t06-w0.5.mod
% Single Track Model: 1q8yA.t06-w0.5.mod
% Single Track Model: 1llnA.t06-w0.5.mod
% Single Track Model: 1ug7A.t06-w0.5.mod
% Single Track Model: 2b4wA.t06-w0.5.mod
% Single Track Model: 1vi2A.t06-w0.5.mod
% Single Track Model: 1ur1A.t06-w0.5.mod
% Single Track Model: 1devB.t06-w0.5.mod
% Single Track Model: 1hdoA.t06-w0.5.mod
% Single Track Model: 1vi9A.t06-w0.5.mod
% Single Track Model: 1zxuA.t06-w0.5.mod
% Single Track Model: 2f05A.t06-w0.5.mod
% Single Track Model: 1ufwA.t06-w0.5.mod
% Single Track Model: 2exrA.t06-w0.5.mod
% Single Track Model: 1udzA.t06-w0.5.mod
% Single Track Model: 1h8bA.t06-w0.5.mod
% Single Track Model: 2ffcA.t06-w0.5.mod
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% Single Track Model: 1fehA.t06-w0.5.mod
% Single Track Model: 1midA.t06-w0.5.mod
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% Single Track Model: 2fxuA.t06-w0.5.mod
% Single Track Model: 1vjzA.t06-w0.5.mod
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% Single Track Model: 1ii5A.t06-w0.5.mod
% Single Track Model: 1eq9A.t06-w0.5.mod
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% Single Track Model: 1oryB.t06-w0.5.mod
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% Single Track Model: 1vi4A.t06-w0.5.mod
% Single Track Model: 2etsA.t06-w0.5.mod
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% Single Track Model: 1io7A.t06-w0.5.mod
% Single Track Model: 1uzxA.t06-w0.5.mod
% Single Track Model: 1tkeA.t06-w0.5.mod
% Single Track Model: 1g2oA.t06-w0.5.mod
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% Single Track Model: 1ispA.t06-w0.5.mod
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% Single Track Model: 1e25A.t06-w0.5.mod
% Single Track Model: 1m6sA.t06-w0.5.mod
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% Single Track Model: 1k0wA.t06-w0.5.mod
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% Single Track Model: 1xwwA.t06-w0.5.mod
% Single Track Model: 3cms.t06-w0.5.mod
% Single Track Model: 2aioA.t06-w0.5.mod
% Single Track Model: 2f9dP.t06-w0.5.mod
% Single Track Model: 1uhaA.t06-w0.5.mod
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% Single Track Model: 1r6jA.t06-w0.5.mod
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% Single Track Model: 1uayA.t06-w0.5.mod
% Single Track Model: 2ddfA.t06-w0.5.mod
% Single Track Model: 1zn8A.t06-w0.5.mod
% Single Track Model: 1c3cA.t06-w0.5.mod
% Single Track Model: 1sat.t06-w0.5.mod
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% Single Track Model: 1ib8A.t06-w0.5.mod
% Single Track Model: 1ahl.t06-w0.5.mod
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% Single Track Model: 2arhA.t06-w0.5.mod
% Single Track Model: 1txlA.t06-w0.5.mod
% Single Track Model: 1tm9A.t06-w0.5.mod
% Single Track Model: 1b24A.t06-w0.5.mod
% Single Track Model: 2asuB.t06-w0.5.mod
% Single Track Model: 2azeB.t06-w0.5.mod
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% Single Track Model: 1y0gA.t06-w0.5.mod
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% Single Track Model: 1gvkB.t06-w0.5.mod
% Single Track Model: 1i26A.t06-w0.5.mod
% Single Track Model: 1abv.t06-w0.5.mod
% Single Track Model: 2bszA.t06-w0.5.mod
% Single Track Model: 2b9wA.t06-w0.5.mod
% Single Track Model: 1v7wA.t06-w0.5.mod
% Single Track Model: 1g1xC.t06-w0.5.mod
% Single Track Model: 1ans.t06-w0.5.mod
% Single Track Model: 1t9bA.t06-w0.5.mod
% Single Track Model: 1oktA.t06-w0.5.mod
% Single Track Model: 1zthA.t06-w0.5.mod
% Single Track Model: 1vb0A.t06-w0.5.mod
% Single Track Model: 1fadA.t06-w0.5.mod
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% Single Track Model: 1nnfA.t06-w0.5.mod
% Single Track Model: 1k0hA.t06-w0.5.mod
% Single Track Model: 2c2xA.t06-w0.5.mod
% Single Track Model: 1g63A.t06-w0.5.mod
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% Single Track Model: 2ahqA.t06-w0.5.mod
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% Single Track Model: 1i25A.t06-w0.5.mod
% Single Track Model: 1tjoA.t06-w0.5.mod
% Single Track Model: 1mj3A.t06-w0.5.mod
% Single Track Model: 1vkuA.t06-w0.5.mod
% Single Track Model: 2bg1A.t06-w0.5.mod
% Single Track Model: 2fcgF.t06-w0.5.mod
% Single Track Model: 1gmxA.t06-w0.5.mod
% Single Track Model: 1z4vA.t06-w0.5.mod
% Single Track Model: 1vybA.t06-w0.5.mod
% Single Track Model: 1irdA.t06-w0.5.mod
% Single Track Model: 1zud1.t06-w0.5.mod
% Single Track Model: 1axh.t06-w0.5.mod
% Single Track Model: 1mxgA.t06-w0.5.mod
% Single Track Model: 1jetA.t06-w0.5.mod
% Single Track Model: 1l0qA.t06-w0.5.mod
% Single Track Model: 2ganA.t06-w0.5.mod
% Single Track Model: 2fytA.t06-w0.5.mod
% Single Track Model: 1pfsA.t06-w0.5.mod
% Single Track Model: 1l0sA.t06-w0.5.mod
% Single Track Model: 1pz4A.t06-w0.5.mod
% Single Track Model: 1dcfA.t06-w0.5.mod
% Single Track Model: 1hc9A.t06-w0.5.mod
% Single Track Model: 1z0kB.t06-w0.5.mod
% Single Track Model: 1yewB.t06-w0.5.mod
% Single Track Model: 1wixA.t06-w0.5.mod
% Single Track Model: 1oi0A.t06-w0.5.mod
% Single Track Model: 1sfsA.t06-w0.5.mod
% Single Track Model: 1kf6C.t06-w0.5.mod
% Single Track Model: 1cl1A.t06-w0.5.mod
% Single Track Model: 1mucA.t06-w0.5.mod
% Single Track Model: 1vykA.t06-w0.5.mod
% Single Track Model: 1v5eA.t06-w0.5.mod
% Single Track Model: 1i1rB.t06-w0.5.mod
% Single Track Model: 1aba.t06-w0.5.mod
% Single Track Model: 1ngkA.t06-w0.5.mod
% Single Track Model: 2bjnA.t06-w0.5.mod
% Single Track Model: 1xd7A.t06-w0.5.mod
% Single Track Model: 1tgrA.t06-w0.5.mod
% Single Track Model: 1dziB.t06-w0.5.mod
% Single Track Model: 1gttA.t06-w0.5.mod
% Single Track Model: 2gmfA.t06-w0.5.mod
% Single Track Model: 1b67A.t06-w0.5.mod
% Single Track Model: 1ia9A.t06-w0.5.mod
% Single Track Model: 2bskB.t06-w0.5.mod
% Single Track Model: 1pxfA.t06-w0.5.mod
% Single Track Model: 1wmtA.t06-w0.5.mod
% Single Track Model: 1ignA.t06-w0.5.mod
% Single Track Model: 1kkeA.t06-w0.5.mod
% Single Track Model: 1gwuA.t06-w0.5.mod
% Single Track Model: 1or0B.t06-w0.5.mod
% Single Track Model: 1q8fA.t06-w0.5.mod
% Single Track Model: 1c4eA.t06-w0.5.mod
% Single Track Model: 1oi6A.t06-w0.5.mod
% Single Track Model: 1yxmA.t06-w0.5.mod
% Single Track Model: 1eumA.t06-w0.5.mod
% Single Track Model: 1kcvH.t06-w0.5.mod
% Single Track Model: 1oq1A.t06-w0.5.mod
% Single Track Model: 1k5nB.t06-w0.5.mod
% Single Track Model: 1mw5A.t06-w0.5.mod
% Single Track Model: 2aqlA.t06-w0.5.mod
% Single Track Model: 1ehyA.t06-w0.5.mod
% Single Track Model: 1bcpD.t06-w0.5.mod
% Single Track Model: 1bio.t06-w0.5.mod
% Single Track Model: 1puiA.t06-w0.5.mod
% Single Track Model: 1v9kA.t06-w0.5.mod
% Single Track Model: 1cffB.t06-w0.5.mod
% Single Track Model: 1ztsA.t06-w0.5.mod
% Single Track Model: 1u1iA.t06-w0.5.mod
% Single Track Model: 2a9sA.t06-w0.5.mod
% Single Track Model: 1frd.t06-w0.5.mod
% Single Track Model: 1zedA.t06-w0.5.mod
% Single Track Model: 1tyjA.t06-w0.5.mod
% Single Track Model: 1vd6A.t06-w0.5.mod
% Single Track Model: 2czlA.t06-w0.5.mod
% Single Track Model: 2a26A.t06-w0.5.mod
% Single Track Model: 1n57A.t06-w0.5.mod
% Single Track Model: 1c93A.t06-w0.5.mod
% Single Track Model: 1weoA.t06-w0.5.mod
% Single Track Model: 1nykA.t06-w0.5.mod
% Single Track Model: 1dsqA.t06-w0.5.mod
% Single Track Model: 2b3gB.t06-w0.5.mod
% Single Track Model: 1w0nA.t06-w0.5.mod
% Single Track Model: 1b4fA.t06-w0.5.mod
% Single Track Model: 1t4bA.t06-w0.5.mod
% Single Track Model: 1yuzA.t06-w0.5.mod
% Single Track Model: 1wf3A.t06-w0.5.mod
% Single Track Model: 1rwyA.t06-w0.5.mod
% Single Track Model: 1ib2A.t06-w0.5.mod
% Single Track Model: 1fsgA.t06-w0.5.mod
% Single Track Model: 1od6A.t06-w0.5.mod
% Single Track Model: 1ok8A.t06-w0.5.mod
% Single Track Model: 1bm4A.t06-w0.5.mod
% Single Track Model: 1hjiB.t06-w0.5.mod
% Single Track Model: 1ydmA.t06-w0.5.mod
% Single Track Model: 1j31A.t06-w0.5.mod
% Single Track Model: 1q1rA.t06-w0.5.mod
% Single Track Model: 1ty4C.t06-w0.5.mod
% Single Track Model: 1u1sA.t06-w0.5.mod
% Single Track Model: 1ag9A.t06-w0.5.mod
% Single Track Model: 1mxmA.t06-w0.5.mod
% Single Track Model: 1rvgA.t06-w0.5.mod
% Single Track Model: 2b4jC.t06-w0.5.mod
% Single Track Model: 1gegA.t06-w0.5.mod
% Single Track Model: 3pcgA.t06-w0.5.mod
% Single Track Model: 1p9yA.t06-w0.5.mod
% Single Track Model: 1cghA.t06-w0.5.mod
% Single Track Model: 1r55A.t06-w0.5.mod
% Single Track Model: 2gq1A.t06-w0.5.mod
% Single Track Model: 1tw7A.t06-w0.5.mod
% Single Track Model: 1msk.t06-w0.5.mod
% Single Track Model: 1gcqA.t06-w0.5.mod
% Single Track Model: 1ad1A.t06-w0.5.mod
% Single Track Model: 1p4uA.t06-w0.5.mod
% Single Track Model: 2ltnA.t06-w0.5.mod
% Single Track Model: 2an9A.t06-w0.5.mod
% Single Track Model: 1xg4A.t06-w0.5.mod
% Single Track Model: 1pl3A.t06-w0.5.mod
% Single Track Model: 1xniA.t06-w0.5.mod
% Single Track Model: 1y7bA.t06-w0.5.mod
% Single Track Model: 1s1hC.t06-w0.5.mod
% Single Track Model: 1ecrA.t06-w0.5.mod
% Single Track Model: 2a7bA.t06-w0.5.mod
% Single Track Model: 1s3cA.t06-w0.5.mod
% Single Track Model: 1dl0A.t06-w0.5.mod
% Single Track Model: 2d00A.t06-w0.5.mod
% Single Track Model: 2bivA.t06-w0.5.mod
% Single Track Model: 1wisA.t06-w0.5.mod
% Single Track Model: 1p1xA.t06-w0.5.mod
% Single Track Model: 1z0sA.t06-w0.5.mod
% Single Track Model: 1jndA.t06-w0.5.mod
% Single Track Model: 2bcgG.t06-w0.5.mod
% Single Track Model: 1wqkA.t06-w0.5.mod
% Single Track Model: 1vpjA.t06-w0.5.mod
% Single Track Model: 1j7xA.t06-w0.5.mod
% Single Track Model: 1ydiB.t06-w0.5.mod
% Single Track Model: 2ga1A.t06-w0.5.mod
% Single Track Model: 1tv8A.t06-w0.5.mod
% Single Track Model: 1fqtA.t06-w0.5.mod
% Single Track Model: 1zljA.t06-w0.5.mod
% Single Track Model: 1wguA.t06-w0.5.mod
% Single Track Model: 1z8yJ.t06-w0.5.mod
% Single Track Model: 1r9lA.t06-w0.5.mod
% Single Track Model: 1fleI.t06-w0.5.mod
% Single Track Model: 1n69A.t06-w0.5.mod
% Single Track Model: 1on0A.t06-w0.5.mod
% Single Track Model: 1vf5F.t06-w0.5.mod
% Single Track Model: 2brcA.t06-w0.5.mod
% Single Track Model: 2ci9A.t06-w0.5.mod
% Single Track Model: 2ciaA.t06-w0.5.mod
% Single Track Model: 2cfeA.t06-w0.5.mod
% Single Track Model: 1htwA.t06-w0.5.mod
% Single Track Model: 2g5dA.t06-w0.5.mod
% Single Track Model: 1tvnA.t06-w0.5.mod
% Single Track Model: 1djtA.t06-w0.5.mod
% Single Track Model: 2plc.t06-w0.5.mod
% Single Track Model: 2d68A.t06-w0.5.mod
% Single Track Model: 1chd.t06-w0.5.mod
% Single Track Model: 1hrnA.t06-w0.5.mod
% Single Track Model: 1nfvA.t06-w0.5.mod
% Single Track Model: 2fq3A.t06-w0.5.mod
% Single Track Model: 2cwxA.t06-w0.5.mod
% Single Track Model: 1r44A.t06-w0.5.mod
% Single Track Model: 1efvB.t06-w0.5.mod
% Single Track Model: 2avdA.t06-w0.5.mod
% Single Track Model: 1x6vA.t06-w0.5.mod
% Single Track Model: 1umhA.t06-w0.5.mod
% Single Track Model: 1s5lU.t06-w0.5.mod
% Single Track Model: 1opd.t06-w0.5.mod
% Single Track Model: 1acw.t06-w0.5.mod
% Single Track Model: 1vl7A.t06-w0.5.mod
% Single Track Model: 1xzwA.t06-w0.5.mod
% Single Track Model: 1m45A.t06-w0.5.mod
% Single Track Model: 1ohvA.t06-w0.5.mod
% Single Track Model: 1mqoA.t06-w0.5.mod
% Single Track Model: 1nu5A.t06-w0.5.mod
% Single Track Model: 1k5nA.t06-w0.5.mod
% Single Track Model: 1dkzA.t06-w0.5.mod
% Single Track Model: 1rttA.t06-w0.5.mod
% Single Track Model: 1tovA.t06-w0.5.mod
% Single Track Model: 1jfmA.t06-w0.5.mod
% Single Track Model: 1kte.t06-w0.5.mod
% Single Track Model: 2fug7.t06-w0.5.mod
% Single Track Model: 1dqeA.t06-w0.5.mod
% Single Track Model: 2b68A.t06-w0.5.mod
% Single Track Model: 1yzsA.t06-w0.5.mod
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% Single Track Model: 1y0kA.t06-w0.5.mod
% Single Track Model: 1ocxA.t06-w0.5.mod
% Single Track Model: 1uhkA.t06-w0.5.mod
% Single Track Model: 1tw6A.t06-w0.5.mod
% Single Track Model: 1jwiB.t06-w0.5.mod
% Single Track Model: 1wmwA.t06-w0.5.mod
% Single Track Model: 1wh2A.t06-w0.5.mod
% Single Track Model: 1rlr.t06-w0.5.mod
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% Single Track Model: 1ej0A.t06-w0.5.mod
% Single Track Model: 1jf9A.t06-w0.5.mod
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% Single Track Model: 1gheA.t06-w0.5.mod
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% Single Track Model: 1t0pB.t06-w0.5.mod
% Single Track Model: 1o4wA.t06-w0.5.mod
% Single Track Model: 1l6rA.t06-w0.5.mod
% Single Track Model: 1wfeA.t06-w0.5.mod
% Single Track Model: 1hy9A.t06-w0.5.mod
% Single Track Model: 1rfs.t06-w0.5.mod
% Single Track Model: 1s2wA.t06-w0.5.mod
% Single Track Model: 1l6sA.t06-w0.5.mod
% Single Track Model: 1jg1A.t06-w0.5.mod
% Single Track Model: 1mxiA.t06-w0.5.mod
% Single Track Model: 1sseB.t06-w0.5.mod
% Single Track Model: 1a64A.t06-w0.5.mod
% Single Track Model: 1uwfA.t06-w0.5.mod
% Single Track Model: 1mzuA.t06-w0.5.mod
% Single Track Model: 1flcA.t06-w0.5.mod
% Single Track Model: 2bj0A.t06-w0.5.mod
% Single Track Model: 1m4iA.t06-w0.5.mod
% Single Track Model: 1f45B.t06-w0.5.mod
% Single Track Model: 1sdjA.t06-w0.5.mod
% Single Track Model: 1ppjE.t06-w0.5.mod
% Single Track Model: 2axtH.t06-w0.5.mod
% Single Track Model: 1xwvA.t06-w0.5.mod
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% Single Track Model: 1cg5B.t06-w0.5.mod
% Single Track Model: 1ig3A.t06-w0.5.mod
% Single Track Model: 2a7oA.t06-w0.5.mod
% Single Track Model: 1nqzA.t06-w0.5.mod
% Single Track Model: 1j5bA.t06-w0.5.mod
% Single Track Model: 1z90A.t06-w0.5.mod
% Single Track Model: 1xkmA.t06-w0.5.mod
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% Single Track Model: 1eiwA.t06-w0.5.mod
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% Single Track Model: 1v76A.t06-w0.5.mod
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% Single Track Model: 1ys5A.t06-w0.5.mod
% Single Track Model: 1irqA.t06-w0.5.mod
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% Single Track Model: 1oshA.t06-w0.5.mod
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% Single Track Model: 1f89A.t06-w0.5.mod
% Single Track Model: 1q8cA.t06-w0.5.mod
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% Single Track Model: 1atlA.t06-w0.5.mod
% Single Track Model: 1yfsA.t06-w0.5.mod
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% Single Track Model: 1lriA.t06-w0.5.mod
% Single Track Model: 1fmtA.t06-w0.5.mod
% Single Track Model: 1wkcA.t06-w0.5.mod
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% Single Track Model: 1g6gA.t06-w0.5.mod
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% Single Track Model: 1wd6A.t06-w0.5.mod
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% Single Track Model: 1tjvA.t06-w0.5.mod
% Single Track Model: 1k2eA.t06-w0.5.mod
% Single Track Model: 1j48A.t06-w0.5.mod
% Single Track Model: 1f5nA.t06-w0.5.mod
% Single Track Model: 1uuzA.t06-w0.5.mod
% Single Track Model: 2bt9A.t06-w0.5.mod
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% Single Track Model: 1jidA.t06-w0.5.mod
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% Single Track Model: 1kv7A.t06-w0.5.mod
% Single Track Model: 1xsoA.t06-w0.5.mod
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% Single Track Model: 1kjnA.t06-w0.5.mod
% Single Track Model: 1umzA.t06-w0.5.mod
% Single Track Model: 1atzA.t06-w0.5.mod
% Single Track Model: 1iioA.t06-w0.5.mod
% Single Track Model: 2bdvA.t06-w0.5.mod
% Single Track Model: 1n2sA.t06-w0.5.mod
% Single Track Model: 1qpcA.t06-w0.5.mod
% Single Track Model: 1u67A.t06-w0.5.mod
% Single Track Model: 1ji1A.t06-w0.5.mod
% Single Track Model: 1ery.t06-w0.5.mod
% Single Track Model: 1aocA.t06-w0.5.mod
% Single Track Model: 1b77A.t06-w0.5.mod
% Single Track Model: 1h2wA.t06-w0.5.mod
% Single Track Model: 2fe8A.t06-w0.5.mod
% Single Track Model: 1zcbA.t06-w0.5.mod
% Single Track Model: 1dwkA.t06-w0.5.mod
% Single Track Model: 1rljA.t06-w0.5.mod
% Single Track Model: 2av4A.t06-w0.5.mod
% Single Track Model: 2eifA.t06-w0.5.mod
% Single Track Model: 1oqcA.t06-w0.5.mod
% Single Track Model: 1z8uA.t06-w0.5.mod
% Single Track Model: 1h9hE.t06-w0.5.mod
% Single Track Model: 1vj1A.t06-w0.5.mod
% Single Track Model: 1ynfA.t06-w0.5.mod
% Single Track Model: 1lqvA.t06-w0.5.mod
% Single Track Model: 1ve0A.t06-w0.5.mod
% Single Track Model: 2gnoA.t06-w0.5.mod
% Single Track Model: 1dowA.t06-w0.5.mod
% Single Track Model: 1zxq.t06-w0.5.mod
% Single Track Model: 1tuwA.t06-w0.5.mod
% Single Track Model: 1hd7A.t06-w0.5.mod
% Single Track Model: 1t95A.t06-w0.5.mod
% Single Track Model: 2f1rA.t06-w0.5.mod
% Single Track Model: 1bomA.t06-w0.5.mod
% Single Track Model: 1rlhA.t06-w0.5.mod
% Single Track Model: 2bf6A.t06-w0.5.mod
% Single Track Model: 2a1iA.t06-w0.5.mod
% Single Track Model: 1rqpA.t06-w0.5.mod
% Single Track Model: 1kqhA.t06-w0.5.mod
% Single Track Model: 1ykjA.t06-w0.5.mod
% Single Track Model: 1zb1A.t06-w0.5.mod
% Single Track Model: 2bdwA.t06-w0.5.mod
% Single Track Model: 1dt7X.t06-w0.5.mod
% Single Track Model: 1z00B.t06-w0.5.mod
% Single Track Model: 1r6fA.t06-w0.5.mod
% Single Track Model: 1i58A.t06-w0.5.mod
% Single Track Model: 2f8xM.t06-w0.5.mod
% Single Track Model: 1qyaA.t06-w0.5.mod
% Single Track Model: 2b49A.t06-w0.5.mod
% Single Track Model: 2a19A.t06-w0.5.mod
% Single Track Model: 2ez3A.t06-w0.5.mod
% Single Track Model: 1l4dB.t06-w0.5.mod
% Single Track Model: 2f20A.t06-w0.5.mod
% Single Track Model: 1v54I.t06-w0.5.mod
% Single Track Model: 1a6s.t06-w0.5.mod
% Single Track Model: 1me8A.t06-w0.5.mod
% Single Track Model: 1zn6A.t06-w0.5.mod
% Single Track Model: 1g5cA.t06-w0.5.mod
% Single Track Model: 1m9xC.t06-w0.5.mod
% Single Track Model: 1qhfA.t06-w0.5.mod
% Single Track Model: 1ejxA.t06-w0.5.mod
% Single Track Model: 1khxA.t06-w0.5.mod
% Single Track Model: 2gatA.t06-w0.5.mod
% Single Track Model: 1spf.t06-w0.5.mod
% Single Track Model: 1yf3A.t06-w0.5.mod
% Single Track Model: 1o8rA.t06-w0.5.mod
% Single Track Model: 1sfp.t06-w0.5.mod
% Single Track Model: 1uebA.t06-w0.5.mod
% Single Track Model: 1yb3A.t06-w0.5.mod
% Single Track Model: 1ztpA.t06-w0.5.mod
% Single Track Model: 1szoA.t06-w0.5.mod
% Single Track Model: 1qavA.t06-w0.5.mod
% Single Track Model: 1eceA.t06-w0.5.mod
% Single Track Model: 1uluA.t06-w0.5.mod
% Single Track Model: 1tx2A.t06-w0.5.mod
% Single Track Model: 1zejA.t06-w0.5.mod
% Single Track Model: 1x99A.t06-w0.5.mod
% Single Track Model: 1z15A.t06-w0.5.mod
% Single Track Model: 2es4D.t06-w0.5.mod
% Single Track Model: 1mf7A.t06-w0.5.mod
% Single Track Model: 1xmeA.t06-w0.5.mod
% Single Track Model: 1yymG.t06-w0.5.mod
% Single Track Model: 1awd.t06-w0.5.mod
% Single Track Model: 2fd6A.t06-w0.5.mod
% Single Track Model: 1v90A.t06-w0.5.mod
% Single Track Model: 2b5iC.t06-w0.5.mod
% Single Track Model: 1sczA.t06-w0.5.mod
% Single Track Model: 2amxA.t06-w0.5.mod
% Single Track Model: 1qntA.t06-w0.5.mod
% Single Track Model: 1nkgA.t06-w0.5.mod
% Single Track Model: 1oqeK.t06-w0.5.mod
% Single Track Model: 1uynX.t06-w0.5.mod
% Single Track Model: 1ng6A.t06-w0.5.mod
% Single Track Model: 1ftrA.t06-w0.5.mod
% Single Track Model: 1ohfA.t06-w0.5.mod
% Single Track Model: 2a5dA.t06-w0.5.mod
% Single Track Model: 1nc5A.t06-w0.5.mod
% Single Track Model: 1nmeB.t06-w0.5.mod
% Single Track Model: 1tkjA.t06-w0.5.mod
% Single Track Model: 1s1hD.t06-w0.5.mod
% Single Track Model: 1of9A.t06-w0.5.mod
% Single Track Model: 1u2zA.t06-w0.5.mod
% Single Track Model: 1h4wA.t06-w0.5.mod
% Single Track Model: 1iqqA.t06-w0.5.mod
% Single Track Model: 1djxA.t06-w0.5.mod
% Single Track Model: 1t3yA.t06-w0.5.mod
% Single Track Model: 1ywxA.t06-w0.5.mod
% Single Track Model: 1wt7A.t06-w0.5.mod
% Single Track Model: 1wjgA.t06-w0.5.mod
% Single Track Model: 1dqbA.t06-w0.5.mod
% Single Track Model: 1sumB.t06-w0.5.mod
% Single Track Model: 2f94F.t06-w0.5.mod
% Single Track Model: 1gskA.t06-w0.5.mod
% Single Track Model: 1vqoE.t06-w0.5.mod
% Single Track Model: 1j3aA.t06-w0.5.mod
% Single Track Model: 1j1bA.t06-w0.5.mod
% Single Track Model: 1m07A.t06-w0.5.mod
% Single Track Model: 2ewcA.t06-w0.5.mod
% Single Track Model: 1tgsI.t06-w0.5.mod
% Single Track Model: 1h8mA.t06-w0.5.mod
% Single Track Model: 2gm3A.t06-w0.5.mod
% Single Track Model: 2ez9A.t06-w0.5.mod
% Single Track Model: 1drw.t06-w0.5.mod
% Single Track Model: 1zirA.t06-w0.5.mod
% Single Track Model: 1owlA.t06-w0.5.mod
% Single Track Model: 1m8uA.t06-w0.5.mod
% Single Track Model: 1w1wE.t06-w0.5.mod
% Single Track Model: 1rrmA.t06-w0.5.mod
% Single Track Model: 1xc3A.t06-w0.5.mod
% Single Track Model: 1kao.t06-w0.5.mod
% Single Track Model: 1ohlA.t06-w0.5.mod
% Single Track Model: 1p4qA.t06-w0.5.mod
% Single Track Model: 1y4tA.t06-w0.5.mod
% Single Track Model: 1ugpA.t06-w0.5.mod
% Single Track Model: 1wpuA.t06-w0.5.mod
% Single Track Model: 1ytqA.t06-w0.5.mod
% Single Track Model: 1uf2A.t06-w0.5.mod
% Single Track Model: 3grs.t06-w0.5.mod
% Single Track Model: 1cewI.t06-w0.5.mod
% Single Track Model: 1tca.t06-w0.5.mod
% Single Track Model: 1behA.t06-w0.5.mod
% Single Track Model: 1ln4A.t06-w0.5.mod
% Single Track Model: 2a6sA.t06-w0.5.mod
% Single Track Model: 1ep3B.t06-w0.5.mod
% Single Track Model: 1o13A.t06-w0.5.mod
% Single Track Model: 2gasA.t06-w0.5.mod
% Single Track Model: 1ypfA.t06-w0.5.mod
% Single Track Model: 1sgwA.t06-w0.5.mod
% Single Track Model: 2eryA.t06-w0.5.mod
% Single Track Model: 1eh8A.t06-w0.5.mod
% Single Track Model: 1o4rA.t06-w0.5.mod
% Single Track Model: 1v58A.t06-w0.5.mod
% Single Track Model: 1go4E.t06-w0.5.mod
% Single Track Model: 1h7dA.t06-w0.5.mod
% Single Track Model: 1chkA.t06-w0.5.mod
% Single Track Model: 1fjgQ.t06-w0.5.mod
% Single Track Model: 1u6pA.t06-w0.5.mod
% Single Track Model: 1u4gA.t06-w0.5.mod
% Single Track Model: 2eulA.t06-w0.5.mod
% Single Track Model: 2c4wA.t06-w0.5.mod
% Single Track Model: 2az4A.t06-w0.5.mod
% Single Track Model: 2b5rC.t06-w0.5.mod
% Single Track Model: 1j6qA.t06-w0.5.mod
% Single Track Model: 2aalA.t06-w0.5.mod
% Single Track Model: 1wgsA.t06-w0.5.mod
% Single Track Model: 1s5aA.t06-w0.5.mod
% Single Track Model: 1bhu.t06-w0.5.mod
% Single Track Model: 1h1nA.t06-w0.5.mod
% Single Track Model: 1gpiA.t06-w0.5.mod
% Single Track Model: 1hx2A.t06-w0.5.mod
% Single Track Model: 1z85A.t06-w0.5.mod
% Single Track Model: 1p4xA.t06-w0.5.mod
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% Single Track Model: 1u84A.t06-w0.5.mod
% Single Track Model: 1oj4A.t06-w0.5.mod
% Single Track Model: 1cunA.t06-w0.5.mod
% Single Track Model: 1crzA.t06-w0.5.mod
% Single Track Model: 1efyA.t06-w0.5.mod
% Single Track Model: 2cvhA.t06-w0.5.mod
% Single Track Model: 1ykwA.t06-w0.5.mod
% Single Track Model: 1x3eA.t06-w0.5.mod
% Single Track Model: 1tr9A.t06-w0.5.mod
% Single Track Model: 1c4rA.t06-w0.5.mod
% Single Track Model: 1yoeA.t06-w0.5.mod
% Single Track Model: 1dlyA.t06-w0.5.mod
% Single Track Model: 1qo7A.t06-w0.5.mod
% Single Track Model: 1ki1B.t06-w0.5.mod
% Single Track Model: 1vqoN.t06-w0.5.mod
% Single Track Model: 1pv1A.t06-w0.5.mod
% Single Track Model: 1nzjA.t06-w0.5.mod
% Single Track Model: 1vimA.t06-w0.5.mod
% Single Track Model: 2fn4A.t06-w0.5.mod
% Single Track Model: 1womA.t06-w0.5.mod
% Single Track Model: 1m65A.t06-w0.5.mod
% Single Track Model: 1sazA.t06-w0.5.mod
% Single Track Model: 1eyeA.t06-w0.5.mod
% Single Track Model: 1knzA.t06-w0.5.mod
% Single Track Model: 1ym0B.t06-w0.5.mod
% Single Track Model: 1uxtA.t06-w0.5.mod
% Single Track Model: 1kaeA.t06-w0.5.mod
% Single Track Model: 1uctA.t06-w0.5.mod
% Single Track Model: 1x75A.t06-w0.5.mod
% Single Track Model: 1o5hA.t06-w0.5.mod
% Single Track Model: 1ej8A.t06-w0.5.mod
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% Single Track Model: 1noa.t06-w0.5.mod
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% Single Track Model: 1r6lA.t06-w0.5.mod
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% Single Track Model: 1ry3A.t06-w0.5.mod
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% Single Track Model: 1s99A.t06-w0.5.mod
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% Single Track Model: 1o6aA.t06-w0.5.mod
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% Single Track Model: 1xauA.t06-w0.5.mod
% Single Track Model: 1d9jA.t06-w0.5.mod
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% Single Track Model: 1rylA.t06-w0.5.mod
% Single Track Model: 1budA.t06-w0.5.mod
% Single Track Model: 1xtmA.t06-w0.5.mod
% Single Track Model: 1ee6A.t06-w0.5.mod
% Single Track Model: 1m3yA.t06-w0.5.mod
% Single Track Model: 1zzkA.t06-w0.5.mod
% Single Track Model: 2fkbA.t06-w0.5.mod
% Single Track Model: 1xkpA.t06-w0.5.mod
% Single Track Model: 1f35A.t06-w0.5.mod
% Single Track Model: 1ejdA.t06-w0.5.mod
% Single Track Model: 1pq1A.t06-w0.5.mod
% Single Track Model: 1vk6A.t06-w0.5.mod
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% Single Track Model: 1u2cA.t06-w0.5.mod
% Single Track Model: 1wmhA.t06-w0.5.mod
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% Single Track Model: 1g2iA.t06-w0.5.mod
% Single Track Model: 1xedA.t06-w0.5.mod
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% Single Track Model: 1eb6A.t06-w0.5.mod
% Single Track Model: 1xqsA.t06-w0.5.mod
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% Single Track Model: 1vdnA.t06-w0.5.mod
% Single Track Model: 1eny.t06-w0.5.mod
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% Single Track Model: 1lyvA.t06-w0.5.mod
% Single Track Model: 1ys4A.t06-w0.5.mod
% Single Track Model: 1n8fA.t06-w0.5.mod
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% Single Track Model: 1xjjA.t06-w0.5.mod
% Single Track Model: 1b8zA.t06-w0.5.mod
% Single Track Model: 1ogwA.t06-w0.5.mod
% Single Track Model: 1wwcA.t06-w0.5.mod
% Single Track Model: 1dofA.t06-w0.5.mod
% Single Track Model: 2ayuA.t06-w0.5.mod
% Single Track Model: 1lmzA.t06-w0.5.mod
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% Single Track Model: 1ssxA.t06-w0.5.mod
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% Single Track Model: 1hl2A.t06-w0.5.mod
% Single Track Model: 1iarB.t06-w0.5.mod
% Single Track Model: 1j6oA.t06-w0.5.mod
% Single Track Model: 1pn0A.t06-w0.5.mod
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% Single Track Model: 1kb9A.t06-w0.5.mod
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% Single Track Model: 2et1A.t06-w0.5.mod
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% Single Track Model: 1gvzA.t06-w0.5.mod
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% Single Track Model: 1zyiA.t06-w0.5.mod
% Single Track Model: 2a5hA.t06-w0.5.mod
% Single Track Model: 1twfJ.t06-w0.5.mod
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% Single Track Model: 1je5A.t06-w0.5.mod
% Single Track Model: 2b5aA.t06-w0.5.mod
% Single Track Model: 1ru3A.t06-w0.5.mod
% Single Track Model: 1ten.t06-w0.5.mod
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% Single Track Model: 1gvfA.t06-w0.5.mod
% Single Track Model: 2basA.t06-w0.5.mod
% Single Track Model: 1vfjA.t06-w0.5.mod
% Single Track Model: 1qz9A.t06-w0.5.mod
% Single Track Model: 1jy2P.t06-w0.5.mod
% Single Track Model: 2calA.t06-w0.5.mod
% Single Track Model: 2gboA.t06-w0.5.mod
% Single Track Model: 1kb9D.t06-w0.5.mod
% Single Track Model: 1wexA.t06-w0.5.mod
% Single Track Model: 1debA.t06-w0.5.mod
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% Single Track Model: 1nixA.t06-w0.5.mod
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% Single Track Model: 1ti6B.t06-w0.5.mod
% Single Track Model: 1epxA.t06-w0.5.mod
% Single Track Model: 1nnlA.t06-w0.5.mod
% Single Track Model: 2au3A.t06-w0.5.mod
% Single Track Model: 1yvhA.t06-w0.5.mod
% Single Track Model: 1dptA.t06-w0.5.mod
% Single Track Model: 1w2yA.t06-w0.5.mod
% Single Track Model: 2fx0A.t06-w0.5.mod
% Single Track Model: 2axtO.t06-w0.5.mod
% Single Track Model: 1c8cA.t06-w0.5.mod
% Single Track Model: 1ygaA.t06-w0.5.mod
% Single Track Model: 1ty9A.t06-w0.5.mod
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% Single Track Model: 1w0hA.t06-w0.5.mod
% Single Track Model: 2ab5A.t06-w0.5.mod
% Single Track Model: 1xewY.t06-w0.5.mod
% Single Track Model: 2bngA.t06-w0.5.mod
% Single Track Model: 1mg4A.t06-w0.5.mod
% Single Track Model: 1t1vA.t06-w0.5.mod
% Single Track Model: 1ypvA.t06-w0.5.mod
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% Single Track Model: 1vctA.t06-w0.5.mod
% Single Track Model: 1op3H.t06-w0.5.mod
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% Single Track Model: 1ycoA.t06-w0.5.mod
% Single Track Model: 1o7dE.t06-w0.5.mod
% Single Track Model: 1p68A.t06-w0.5.mod
% Single Track Model: 1m46B.t06-w0.5.mod
% Single Track Model: 1jftA.t06-w0.5.mod
% Single Track Model: 1zrxA.t06-w0.5.mod
% Single Track Model: 1wm1A.t06-w0.5.mod
% Single Track Model: 2gvkA.t06-w0.5.mod
% Single Track Model: 1uacH.t06-w0.5.mod
% Single Track Model: 1efpB.t06-w0.5.mod
% Single Track Model: 1o9gA.t06-w0.5.mod
% Single Track Model: 1ghpA.t06-w0.5.mod
% Single Track Model: 1k8kC.t06-w0.5.mod
% Single Track Model: 1o26A.t06-w0.5.mod
% Single Track Model: 1wxiA.t06-w0.5.mod
% Single Track Model: 2brfA.t06-w0.5.mod
% Single Track Model: 1obdA.t06-w0.5.mod
% Single Track Model: 1p99A.t06-w0.5.mod
% Single Track Model: 1mswD.t06-w0.5.mod
% Single Track Model: 2d83A.t06-w0.5.mod
% Single Track Model: 1ywnA.t06-w0.5.mod
% Single Track Model: 1regX.t06-w0.5.mod
% Single Track Model: 2a15A.t06-w0.5.mod
% Single Track Model: 1bhtA.t06-w0.5.mod
% Single Track Model: 1jmkC.t06-w0.5.mod
% Single Track Model: 1v3wA.t06-w0.5.mod
% Single Track Model: 1rocA.t06-w0.5.mod
% Single Track Model: 2msbA.t06-w0.5.mod
% Single Track Model: 1xreA.t06-w0.5.mod
% Single Track Model: 1agi.t06-w0.5.mod
% Single Track Model: 1ekjA.t06-w0.5.mod
% Single Track Model: 1widA.t06-w0.5.mod
% Single Track Model: 1umgA.t06-w0.5.mod
% Single Track Model: 1us7B.t06-w0.5.mod
% Single Track Model: 1n83A.t06-w0.5.mod
% Single Track Model: 1q0vA.t06-w0.5.mod
% Single Track Model: 1gkpA.t06-w0.5.mod
% Single Track Model: 1b12A.t06-w0.5.mod
% Single Track Model: 1gnlA.t06-w0.5.mod
% Single Track Model: 1c01A.t06-w0.5.mod
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% Single Track Model: 1fjgJ.t06-w0.5.mod
% Single Track Model: 2fcfA.t06-w0.5.mod
% Single Track Model: 1e2wA.t06-w0.5.mod
% Single Track Model: 1y2qA.t06-w0.5.mod
% Single Track Model: 1rz3A.t06-w0.5.mod
% Single Track Model: 1cq3A.t06-w0.5.mod
% Single Track Model: 1h0pA.t06-w0.5.mod
% Single Track Model: 1ic6A.t06-w0.5.mod
% Single Track Model: 1i7nA.t06-w0.5.mod
% Single Track Model: 1ii7A.t06-w0.5.mod
% Single Track Model: 1v2xA.t06-w0.5.mod
% Single Track Model: 1wl4A.t06-w0.5.mod
% Single Track Model: 1vjoA.t06-w0.5.mod
% Single Track Model: 1qfqB.t06-w0.5.mod
% Single Track Model: 1mqvA.t06-w0.5.mod
% Single Track Model: 1v5rA.t06-w0.5.mod
% Single Track Model: 1cjwA.t06-w0.5.mod
% Single Track Model: 1wdcC.t06-w0.5.mod
% Single Track Model: 2bsxA.t06-w0.5.mod
% Single Track Model: 1q4rA.t06-w0.5.mod
% Single Track Model: 1c75A.t06-w0.5.mod
% Single Track Model: 2f6hX.t06-w0.5.mod
% Single Track Model: 1ziwA.t06-w0.5.mod
% Single Track Model: 2ajwA.t06-w0.5.mod
% Single Track Model: 1a62.t06-w0.5.mod
% Single Track Model: 1i4fA.t06-w0.5.mod
% Single Track Model: 1e6bA.t06-w0.5.mod
% Single Track Model: 1bgc.t06-w0.5.mod
% Single Track Model: 2gnxA.t06-w0.5.mod
% Single Track Model: 1v95A.t06-w0.5.mod
% Single Track Model: 1tu7A.t06-w0.5.mod
% Single Track Model: 2a7yA.t06-w0.5.mod
% Single Track Model: 1x31D.t06-w0.5.mod
% Single Track Model: 1wba.t06-w0.5.mod
% Single Track Model: 1vr8A.t06-w0.5.mod
% Single Track Model: 1cby.t06-w0.5.mod
% Single Track Model: 1g0cA.t06-w0.5.mod
% Single Track Model: 1y9zA.t06-w0.5.mod
% Single Track Model: 1vggA.t06-w0.5.mod
% Single Track Model: 1sg0A.t06-w0.5.mod
% Single Track Model: 1jb0D.t06-w0.5.mod
% Single Track Model: 2blfA.t06-w0.5.mod
% Single Track Model: 1vavA.t06-w0.5.mod
% Single Track Model: 1nszA.t06-w0.5.mod
% Single Track Model: 1xk4C.t06-w0.5.mod
% Single Track Model: 1dd9A.t06-w0.5.mod
% Single Track Model: 1v02A.t06-w0.5.mod
% Single Track Model: 1pvtA.t06-w0.5.mod
% Single Track Model: 1ct5A.t06-w0.5.mod
% Single Track Model: 1jmtA.t06-w0.5.mod
% Single Track Model: 2erfA.t06-w0.5.mod
% Single Track Model: 1zu4A.t06-w0.5.mod
% Single Track Model: 2hddA.t06-w0.5.mod
% Single Track Model: 1c1dA.t06-w0.5.mod
% Single Track Model: 1ie9A.t06-w0.5.mod
% Single Track Model: 1zhhB.t06-w0.5.mod
% Single Track Model: 1dyqA.t06-w0.5.mod
% Single Track Model: 1xmxA.t06-w0.5.mod
% Single Track Model: 1nogA.t06-w0.5.mod
% Single Track Model: 1m7bA.t06-w0.5.mod
% Single Track Model: 1z7kB.t06-w0.5.mod
% Single Track Model: 1t15A.t06-w0.5.mod
% Single Track Model: 1t9fA.t06-w0.5.mod
% Single Track Model: 1s3rA.t06-w0.5.mod
% Single Track Model: 1cruA.t06-w0.5.mod
% Single Track Model: 1jadA.t06-w0.5.mod
% Single Track Model: 1wq8A.t06-w0.5.mod
% Single Track Model: 1rliA.t06-w0.5.mod
% Single Track Model: 1mlwA.t06-w0.5.mod
% Single Track Model: 7ahlA.t06-w0.5.mod
% Single Track Model: 1moq.t06-w0.5.mod
% Single Track Model: 1yqeA.t06-w0.5.mod
% Single Track Model: 1hgxA.t06-w0.5.mod
% Single Track Model: 2ac3A.t06-w0.5.mod
% Single Track Model: 1fiqB.t06-w0.5.mod
% Single Track Model: 1jmsA.t06-w0.5.mod
% Single Track Model: 1w15A.t06-w0.5.mod
% Single Track Model: 1t3uA.t06-w0.5.mod
% Single Track Model: 1noyA.t06-w0.5.mod
% Single Track Model: 1ub3A.t06-w0.5.mod
% Single Track Model: 1svfA.t06-w0.5.mod
% Single Track Model: 1vk4A.t06-w0.5.mod
% Single Track Model: 1qvzA.t06-w0.5.mod
% Single Track Model: 1lst.t06-w0.5.mod
% Single Track Model: 1qwoA.t06-w0.5.mod
% Single Track Model: 1xm3A.t06-w0.5.mod
% Single Track Model: 2eu9A.t06-w0.5.mod
% Single Track Model: 1qh4A.t06-w0.5.mod
% Single Track Model: 1k1eA.t06-w0.5.mod
% Single Track Model: 1n2aA.t06-w0.5.mod
% Single Track Model: 1ro5A.t06-w0.5.mod
% Single Track Model: 1aol.t06-w0.5.mod
% Single Track Model: 19hcA.t06-w0.5.mod
% Single Track Model: 2a2pA.t06-w0.5.mod
% Single Track Model: 1wmzA.t06-w0.5.mod
% Single Track Model: 1dgnA.t06-w0.5.mod
% Single Track Model: 1ze3D.t06-w0.5.mod
% Single Track Model: 1xb4A.t06-w0.5.mod
% Single Track Model: 1ncwH.t06-w0.5.mod
% Single Track Model: 1l6wA.t06-w0.5.mod
% Single Track Model: 1xouA.t06-w0.5.mod
% Single Track Model: 2gx9A.t06-w0.5.mod
% Single Track Model: 2bx6A.t06-w0.5.mod
% Single Track Model: 1hi9A.t06-w0.5.mod
% Single Track Model: 1yal.t06-w0.5.mod
% Single Track Model: 1vl1A.t06-w0.5.mod
% Single Track Model: 1cqmA.t06-w0.5.mod
% Single Track Model: 1dxsA.t06-w0.5.mod
% Single Track Model: 1wgkA.t06-w0.5.mod
% Single Track Model: 1rhs.t06-w0.5.mod
% Single Track Model: 1zwzA.t06-w0.5.mod
% Single Track Model: 1j8rA.t06-w0.5.mod
% Single Track Model: 1zr0B.t06-w0.5.mod
% Single Track Model: 1gweA.t06-w0.5.mod
% Single Track Model: 2cchB.t06-w0.5.mod
% Single Track Model: 1wzuA.t06-w0.5.mod
% Single Track Model: 1nqkA.t06-w0.5.mod
% Single Track Model: 1vqzA.t06-w0.5.mod
% Single Track Model: 1ohtA.t06-w0.5.mod
% Single Track Model: 1tkkA.t06-w0.5.mod
% Single Track Model: 1msc.t06-w0.5.mod
% Single Track Model: 1qwdA.t06-w0.5.mod
% Single Track Model: 2dfkA.t06-w0.5.mod
% Single Track Model: 1uzbA.t06-w0.5.mod
% Single Track Model: 1iejA.t06-w0.5.mod
% Single Track Model: 2bhgA.t06-w0.5.mod
% Single Track Model: 1qusA.t06-w0.5.mod
% Single Track Model: 1xb2B.t06-w0.5.mod
% Single Track Model: 1wj9A.t06-w0.5.mod
% Single Track Model: 1pvaA.t06-w0.5.mod
% Single Track Model: 2gh1A.t06-w0.5.mod
% Single Track Model: 1gsa.t06-w0.5.mod
% Single Track Model: 1oe8A.t06-w0.5.mod
% Single Track Model: 1uanA.t06-w0.5.mod
% Single Track Model: 1f8fA.t06-w0.5.mod
% Single Track Model: 1k61A.t06-w0.5.mod
% Single Track Model: 1ec7A.t06-w0.5.mod
% Single Track Model: 1juvA.t06-w0.5.mod
% Single Track Model: 1jli.t06-w0.5.mod
% Single Track Model: 1r8nA.t06-w0.5.mod
% Single Track Model: 1g4yB.t06-w0.5.mod
% Single Track Model: 1zu1A.t06-w0.5.mod
% Single Track Model: 1v9sA.t06-w0.5.mod
% Single Track Model: 1us0A.t06-w0.5.mod
% Single Track Model: 1p9aG.t06-w0.5.mod
% Single Track Model: 1vib.t06-w0.5.mod
% Single Track Model: 1j1lA.t06-w0.5.mod
% Single Track Model: 1k8wA.t06-w0.5.mod
% Single Track Model: 1n1cA.t06-w0.5.mod
% Single Track Model: 1q7eA.t06-w0.5.mod
% Single Track Model: 1eqfA.t06-w0.5.mod
% Single Track Model: 1h1oA.t06-w0.5.mod
% Single Track Model: 1qe3A.t06-w0.5.mod
% Single Track Model: 1fnd.t06-w0.5.mod
% Single Track Model: 2ltnB.t06-w0.5.mod
% Single Track Model: 2ah6A.t06-w0.5.mod
% Single Track Model: 1bqfA.t06-w0.5.mod
% Single Track Model: 1jlzA.t06-w0.5.mod
% Single Track Model: 1wouA.t06-w0.5.mod
% Single Track Model: 1rp0A.t06-w0.5.mod
% Single Track Model: 1cjcA.t06-w0.5.mod
% Single Track Model: 1mslA.t06-w0.5.mod
% Single Track Model: 1i07A.t06-w0.5.mod
% Single Track Model: 1j0dA.t06-w0.5.mod
% Single Track Model: 1m98A.t06-w0.5.mod
% Single Track Model: 1tp9A.t06-w0.5.mod
% Single Track Model: 1ez0A.t06-w0.5.mod
% Single Track Model: 1adr.t06-w0.5.mod
% Single Track Model: 1ejfA.t06-w0.5.mod
% Single Track Model: 1imt.t06-w0.5.mod
% Single Track Model: 1k4uP.t06-w0.5.mod
% Single Track Model: 2d1pA.t06-w0.5.mod
% Single Track Model: 1nz0A.t06-w0.5.mod
% Single Track Model: 1sg5A.t06-w0.5.mod
% Single Track Model: 1eu8A.t06-w0.5.mod
% Single Track Model: 2bogX.t06-w0.5.mod
% Single Track Model: 1pb5A.t06-w0.5.mod
% Single Track Model: 2awkA.t06-w0.5.mod
% Single Track Model: 1acf.t06-w0.5.mod
% Single Track Model: 1li4A.t06-w0.5.mod
% Single Track Model: 1yqsA.t06-w0.5.mod
% Single Track Model: 2az0A.t06-w0.5.mod
% Single Track Model: 1ydgA.t06-w0.5.mod
% Single Track Model: 1c7qA.t06-w0.5.mod
% Single Track Model: 1mm0A.t06-w0.5.mod
% Single Track Model: 1n5nA.t06-w0.5.mod
% Single Track Model: 1gudA.t06-w0.5.mod
% Single Track Model: 1mknA.t06-w0.5.mod
% Single Track Model: 1wdeA.t06-w0.5.mod
% Single Track Model: 1rweA.t06-w0.5.mod
% Single Track Model: 1ew4A.t06-w0.5.mod
% Single Track Model: 1xsqA.t06-w0.5.mod
% Single Track Model: 1h3lA.t06-w0.5.mod
% Single Track Model: 1wpbA.t06-w0.5.mod
% Single Track Model: 2rmcA.t06-w0.5.mod
% Single Track Model: 1y1pA.t06-w0.5.mod
% Single Track Model: 1n6aA.t06-w0.5.mod
% Single Track Model: 1sq9A.t06-w0.5.mod
% Single Track Model: 1qgtA.t06-w0.5.mod
% Single Track Model: 2gp4A.t06-w0.5.mod
% Single Track Model: 1f7dA.t06-w0.5.mod
% Single Track Model: 1pjcA.t06-w0.5.mod
% Single Track Model: 1h3qA.t06-w0.5.mod
% Single Track Model: 1n35A.t06-w0.5.mod
% Single Track Model: 1zw8A.t06-w0.5.mod
% Single Track Model: 1u5mA.t06-w0.5.mod
% Single Track Model: 1nnxA.t06-w0.5.mod
% Single Track Model: 1bkpA.t06-w0.5.mod
% Single Track Model: 2gp5A.t06-w0.5.mod
% Single Track Model: 2g8mA.t06-w0.5.mod
% Single Track Model: 2fcbA.t06-w0.5.mod
% Single Track Model: 1s83A.t06-w0.5.mod
% Single Track Model: 1pa1A.t06-w0.5.mod
% Single Track Model: 1uzeA.t06-w0.5.mod
% Single Track Model: 1iq6A.t06-w0.5.mod
% Single Track Model: 1lo6A.t06-w0.5.mod
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% Single Track Model: 2axcA.t06-w0.5.mod
% Single Track Model: 1ak0.t06-w0.5.mod
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% Single Track Model: 1yreA.t06-w0.5.mod
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% Single Track Model: 1rw6A.t06-w0.5.mod
% Single Track Model: 1rgxA.t06-w0.5.mod
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% Single Track Model: 1jd0A.t06-w0.5.mod
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% Single Track Model: 1o7nB.t06-w0.5.mod
% Single Track Model: 2dp5A.t06-w0.5.mod
% Single Track Model: 2al2A.t06-w0.5.mod
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% Single Track Model: 1w68A.t06-w0.5.mod
% Single Track Model: 1b0uA.t06-w0.5.mod
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% Single Track Model: 1zm8A.t06-w0.5.mod
% Single Track Model: 1zdrA.t06-w0.5.mod
% Single Track Model: 2erl.t06-w0.5.mod
% Single Track Model: 1yua.t06-w0.5.mod
% Single Track Model: 1a73A.t06-w0.5.mod
% Single Track Model: 1f5qB.t06-w0.5.mod
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% Single Track Model: 2fefA.t06-w0.5.mod
% Single Track Model: 1em9A.t06-w0.5.mod
% Single Track Model: 2a14A.t06-w0.5.mod
% Single Track Model: 1oxxK.t06-w0.5.mod
% Single Track Model: 1wy6A.t06-w0.5.mod
% Single Track Model: 1f7sA.t06-w0.5.mod
% Single Track Model: 1lycA.t06-w0.5.mod
% Single Track Model: 1l3pA.t06-w0.5.mod
% Single Track Model: 1uhvA.t06-w0.5.mod
% Single Track Model: 1p9hA.t06-w0.5.mod
% Single Track Model: 2bw8A.t06-w0.5.mod
% Single Track Model: 1s6wA.t06-w0.5.mod
% Single Track Model: 1gps.t06-w0.5.mod
% Single Track Model: 1u9cA.t06-w0.5.mod
% Single Track Model: 1ns5A.t06-w0.5.mod
% Single Track Model: 1tt7A.t06-w0.5.mod
% Single Track Model: 1nox.t06-w0.5.mod
% Single Track Model: 1pfiA.t06-w0.5.mod
% Single Track Model: 1oe1A.t06-w0.5.mod
% Single Track Model: 1zgyA.t06-w0.5.mod
% Single Track Model: 1wcrA.t06-w0.5.mod
% Single Track Model: 1afwA.t06-w0.5.mod
% Single Track Model: 1cr5A.t06-w0.5.mod
% Single Track Model: 1omoA.t06-w0.5.mod
% Single Track Model: 1fd3A.t06-w0.5.mod
% Single Track Model: 1snyA.t06-w0.5.mod
% Single Track Model: 1voqa.t06-w0.5.mod
% Single Track Model: 1jl1A.t06-w0.5.mod
% Single Track Model: 1qysA.t06-w0.5.mod
% Single Track Model: 1hg7A.t06-w0.5.mod
% Single Track Model: 1rzuA.t06-w0.5.mod
% Single Track Model: 1x6oA.t06-w0.5.mod
% Single Track Model: 1wdcA.t06-w0.5.mod
% Single Track Model: 2a9gA.t06-w0.5.mod
% Single Track Model: 1t77A.t06-w0.5.mod
% Single Track Model: 1aym2.t06-w0.5.mod
% Single Track Model: 1exqA.t06-w0.5.mod
% Single Track Model: 2beiA.t06-w0.5.mod
% Single Track Model: 1vqoH.t06-w0.5.mod
% Single Track Model: 1orrA.t06-w0.5.mod
% Single Track Model: 1vgjA.t06-w0.5.mod
% Single Track Model: 1u09A.t06-w0.5.mod
% Single Track Model: 1u5hA.t06-w0.5.mod
% Single Track Model: 1r2rA.t06-w0.5.mod
% Single Track Model: 1hruA.t06-w0.5.mod
% Single Track Model: 1who.t06-w0.5.mod
% Single Track Model: 1m4lA.t06-w0.5.mod
% Single Track Model: 1r2mA.t06-w0.5.mod
% Single Track Model: 1juhA.t06-w0.5.mod
% Single Track Model: 1oeiA.t06-w0.5.mod
% Single Track Model: 1rrzA.t06-w0.5.mod
% Single Track Model: 1eziA.t06-w0.5.mod
% Single Track Model: 1xyzA.t06-w0.5.mod
% Single Track Model: 1u1tA.t06-w0.5.mod
% Single Track Model: 1yh2A.t06-w0.5.mod
% Single Track Model: 1a8q.t06-w0.5.mod
% Single Track Model: 1pxzA.t06-w0.5.mod
% Single Track Model: 1vf5E.t06-w0.5.mod
% Single Track Model: 2bukA.t06-w0.5.mod
% Single Track Model: 1kxpD.t06-w0.5.mod
% Single Track Model: 2cxcA.t06-w0.5.mod
% Single Track Model: 1jo8A.t06-w0.5.mod
% Single Track Model: 1w1nA.t06-w0.5.mod
% Single Track Model: 1spjA.t06-w0.5.mod
% Single Track Model: 2cuaA.t06-w0.5.mod
% Single Track Model: 2beqA.t06-w0.5.mod
% Single Track Model: 1ix9A.t06-w0.5.mod
% Single Track Model: 1wsrA.t06-w0.5.mod
% Single Track Model: 1ef1C.t06-w0.5.mod
% Single Track Model: 1s2oA.t06-w0.5.mod
% Single Track Model: 1a11.t06-w0.5.mod
% Single Track Model: 1ornA.t06-w0.5.mod
% Single Track Model: 1neu.t06-w0.5.mod
% Single Track Model: 1mp1A.t06-w0.5.mod
% Single Track Model: 1d8hA.t06-w0.5.mod
% Single Track Model: 2bwrA.t06-w0.5.mod
% Single Track Model: 1wstA.t06-w0.5.mod
% Single Track Model: 1p65A.t06-w0.5.mod
% Single Track Model: 1ufmA.t06-w0.5.mod
% Single Track Model: 1tif.t06-w0.5.mod
% Single Track Model: 1c02A.t06-w0.5.mod
% Single Track Model: 1gjwA.t06-w0.5.mod
% Single Track Model: 8tfvA.t06-w0.5.mod
% Single Track Model: 1ptmA.t06-w0.5.mod
% Single Track Model: 1qveA.t06-w0.5.mod
% Single Track Model: 1ifp.t06-w0.5.mod
% Single Track Model: 1cvl.t06-w0.5.mod
% Single Track Model: 1ubkS.t06-w0.5.mod
% Single Track Model: 1mgrA.t06-w0.5.mod
% Single Track Model: 1wolA.t06-w0.5.mod
% Single Track Model: 1s6cB.t06-w0.5.mod
% Single Track Model: 1a34A.t06-w0.5.mod
% Single Track Model: 1v6zA.t06-w0.5.mod
% Single Track Model: 1q42A.t06-w0.5.mod
% Single Track Model: 3fib.t06-w0.5.mod
% Single Track Model: 1uu1A.t06-w0.5.mod
% Single Track Model: 1pylA.t06-w0.5.mod
% Single Track Model: 2bpa3.t06-w0.5.mod
% Single Track Model: 1zemA.t06-w0.5.mod
% Single Track Model: 1cztA.t06-w0.5.mod
% Single Track Model: 2b82A.t06-w0.5.mod
% Single Track Model: 1rqbA.t06-w0.5.mod
% Single Track Model: 1zrvA.t06-w0.5.mod
% Single Track Model: 1iugA.t06-w0.5.mod
% Single Track Model: 1thm.t06-w0.5.mod
% Single Track Model: 2atpB.t06-w0.5.mod
% Single Track Model: 1ru0A.t06-w0.5.mod
% Single Track Model: 1aihA.t06-w0.5.mod
% Single Track Model: 1q40B.t06-w0.5.mod
% Single Track Model: 1vzwA.t06-w0.5.mod
% Single Track Model: 1by2.t06-w0.5.mod
% Single Track Model: 1pp5A.t06-w0.5.mod
% Single Track Model: 1xrxA.t06-w0.5.mod
% Single Track Model: 1p4kA.t06-w0.5.mod
% Single Track Model: 1xqoA.t06-w0.5.mod
% Single Track Model: 2g0uA.t06-w0.5.mod
% Single Track Model: 1dtjA.t06-w0.5.mod
% Single Track Model: 1zgdA.t06-w0.5.mod
% Single Track Model: 1ik9A.t06-w0.5.mod
% Single Track Model: 1e43A.t06-w0.5.mod
% Single Track Model: 1vhqA.t06-w0.5.mod
% Single Track Model: 2c7nA.t06-w0.5.mod
% Single Track Model: 1wbeA.t06-w0.5.mod
% Single Track Model: 1vzjA.t06-w0.5.mod
% Single Track Model: 1gtmA.t06-w0.5.mod
% Single Track Model: 2b5hA.t06-w0.5.mod
% Single Track Model: 2cioB.t06-w0.5.mod
% Single Track Model: 1e9pA.t06-w0.5.mod
% Single Track Model: 1i1qA.t06-w0.5.mod
% Single Track Model: 1w8xM.t06-w0.5.mod
% Single Track Model: 1ee4A.t06-w0.5.mod
% Single Track Model: 1r26A.t06-w0.5.mod
% Single Track Model: 1n2zA.t06-w0.5.mod
% Single Track Model: 2cxaA.t06-w0.5.mod
% Single Track Model: 1g1kA.t06-w0.5.mod
% Single Track Model: 2fbqA.t06-w0.5.mod
% Single Track Model: 1gotG.t06-w0.5.mod
% Single Track Model: 2fcjA.t06-w0.5.mod
% Single Track Model: 2f6mA.t06-w0.5.mod
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% Single Track Model: 1or0A.t06-w0.5.mod
% Single Track Model: 2f2eA.t06-w0.5.mod
% Single Track Model: 1v4xB.t06-w0.5.mod
% Single Track Model: 1k1fA.t06-w0.5.mod
% Single Track Model: 1zm7A.t06-w0.5.mod
% Single Track Model: 2ghrA.t06-w0.5.mod
% Single Track Model: 2g2dA.t06-w0.5.mod
% Single Track Model: 1tvgA.t06-w0.5.mod
% Single Track Model: 1h4xA.t06-w0.5.mod
% Single Track Model: 1i39A.t06-w0.5.mod
% Single Track Model: 1k94A.t06-w0.5.mod
% Single Track Model: 1pzxA.t06-w0.5.mod
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% Single Track Model: 1q1fA.t06-w0.5.mod
% Single Track Model: 1rjiA.t06-w0.5.mod
% Single Track Model: 1ktbA.t06-w0.5.mod
% Single Track Model: 2baiA.t06-w0.5.mod
% Single Track Model: 1hyxH.t06-w0.5.mod
% Single Track Model: 2a35A.t06-w0.5.mod
% Single Track Model: 2g8oA.t06-w0.5.mod
% Single Track Model: 1n7sB.t06-w0.5.mod
% Single Track Model: 2fv6A.t06-w0.5.mod
% Single Track Model: 1bywA.t06-w0.5.mod
% Single Track Model: 1ev0A.t06-w0.5.mod
% Single Track Model: 1sd4A.t06-w0.5.mod
% Single Track Model: 1xg0B.t06-w0.5.mod
% Single Track Model: 1kzyC.t06-w0.5.mod
% Single Track Model: 1jixA.t06-w0.5.mod
% Single Track Model: 1zgoA.t06-w0.5.mod
% Single Track Model: 2f4pA.t06-w0.5.mod
% Single Track Model: 1s2dA.t06-w0.5.mod
% Single Track Model: 1ixlA.t06-w0.5.mod
% Single Track Model: 1owfA.t06-w0.5.mod
% Single Track Model: 1ezwA.t06-w0.5.mod
% Single Track Model: 1i6aA.t06-w0.5.mod
% Single Track Model: 1z5hA.t06-w0.5.mod
% Single Track Model: 1ww7A.t06-w0.5.mod
% Single Track Model: 1p9gA.t06-w0.5.mod
% Single Track Model: 1kxoA.t06-w0.5.mod
% Single Track Model: 1kr4A.t06-w0.5.mod
% Single Track Model: 1ryoA.t06-w0.5.mod
% Single Track Model: 1tzyD.t06-w0.5.mod
% Single Track Model: 1guuA.t06-w0.5.mod
% Single Track Model: 1ys1X.t06-w0.5.mod
% Single Track Model: 1vr9A.t06-w0.5.mod
% Single Track Model: 1lvmA.t06-w0.5.mod
% Single Track Model: 1ta8A.t06-w0.5.mod
% Single Track Model: 2cveA.t06-w0.5.mod
% Single Track Model: 1j24A.t06-w0.5.mod
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% Single Track Model: 1cpt.t06-w0.5.mod
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% Single Track Model: 1t4oA.t06-w0.5.mod
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% Single Track Model: 1bl1.t06-w0.5.mod
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% Single Track Model: 1senA.t06-w0.5.mod
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% Single Track Model: 1zanH.t06-w0.5.mod
% Single Track Model: 1ro0A.t06-w0.5.mod
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% Single Track Model: 1umdA.t06-w0.5.mod
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% Single Track Model: 1neeA.t06-w0.5.mod
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% Single Track Model: 1u7eB.t06-w0.5.mod
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% Single Track Model: 1g9gA.t06-w0.5.mod
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% Single Track Model: 1wu7A.t06-w0.5.mod
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% Single Track Model: 1f8vA.t06-w0.5.mod
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% Single Track Model: 2cs7A.t06-w0.5.mod
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% Single Track Model: 1bm8.t06-w0.5.mod
% Single Track Model: 1jdhA.t06-w0.5.mod
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% Single Track Model: 1r0vA.t06-w0.5.mod
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% Single Track Model: 1r61A.t06-w0.5.mod
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% Single Track Model: 1fv5A.t06-w0.5.mod
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% Single Track Model: 1jb0A.t06-w0.5.mod
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% Single Track Model: 2czdA.t06-w0.5.mod
% Single Track Model: 1vbuA.t06-w0.5.mod
% Single Track Model: 1j27A.t06-w0.5.mod
% Single Track Model: 1rifA.t06-w0.5.mod
% Single Track Model: 1ockA.t06-w0.5.mod
% Single Track Model: 1g61A.t06-w0.5.mod
% Single Track Model: 2bm3A.t06-w0.5.mod
% Single Track Model: 1ub9A.t06-w0.5.mod
% Single Track Model: 1vc4A.t06-w0.5.mod
% Single Track Model: 1v5mA.t06-w0.5.mod
% Single Track Model: 1oxdA.t06-w0.5.mod
% Single Track Model: 2ae2A.t06-w0.5.mod
% Single Track Model: 1t1uA.t06-w0.5.mod
% Single Track Model: 1hp8.t06-w0.5.mod
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% Single Track Model: 1xw7A.t06-w0.5.mod
% Single Track Model: 1t62A.t06-w0.5.mod
% Single Track Model: 1bw0A.t06-w0.5.mod
% Single Track Model: 1bg1A.t06-w0.5.mod
% Single Track Model: 1tdpA.t06-w0.5.mod
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% Single Track Model: 1nh1A.t06-w0.5.mod
% Single Track Model: 1ufiA.t06-w0.5.mod
% Single Track Model: 1dv1A.t06-w0.5.mod
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% Single Track Model: 1vm9A.t06-w0.5.mod
% Single Track Model: 1sixA.t06-w0.5.mod
% Single Track Model: 2dg5B.t06-w0.5.mod
% Single Track Model: 1wbiA.t06-w0.5.mod
% Single Track Model: 1klrA.t06-w0.5.mod
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% Single Track Model: 1hyeA.t06-w0.5.mod
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% Single Track Model: 1pxqA.t06-w0.5.mod
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% Single Track Model: 2pspA.t06-w0.5.mod
% Single Track Model: 1oc2A.t06-w0.5.mod
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% Single Track Model: 1m06J.t06-w0.5.mod
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% Single Track Model: 1vjvA.t06-w0.5.mod
% Single Track Model: 1bb9.t06-w0.5.mod
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% Single Track Model: 1ewnA.t06-w0.5.mod
% Single Track Model: 1wteA.t06-w0.5.mod
% Single Track Model: 1i4wA.t06-w0.5.mod
% Single Track Model: 1o9aB.t06-w0.5.mod
% Single Track Model: 1uaiA.t06-w0.5.mod
% Single Track Model: 1wmhB.t06-w0.5.mod
% Single Track Model: 1oqqA.t06-w0.5.mod
% Single Track Model: 1rypL.t06-w0.5.mod
% Single Track Model: 1nybA.t06-w0.5.mod
% Single Track Model: 1jr8A.t06-w0.5.mod
% Single Track Model: 1zsgB.t06-w0.5.mod
% Single Track Model: 1nbwA.t06-w0.5.mod
% Single Track Model: 2d0oA.t06-w0.5.mod
% Single Track Model: 1vzsA.t06-w0.5.mod
% Single Track Model: 1gpr.t06-w0.5.mod
% Single Track Model: 1sqwA.t06-w0.5.mod
% Single Track Model: 1o6lA.t06-w0.5.mod
% Single Track Model: 1tfzA.t06-w0.5.mod
% Single Track Model: 1sqkB.t06-w0.5.mod
% Single Track Model: 1evhA.t06-w0.5.mod
% Single Track Model: 1w98B.t06-w0.5.mod
% Single Track Model: 1aa6.t06-w0.5.mod
% Single Track Model: 1z9iA.t06-w0.5.mod
% Single Track Model: 1v1dA.t06-w0.5.mod
% Single Track Model: 1ppfE.t06-w0.5.mod
% Single Track Model: 1vquA.t06-w0.5.mod
% Single Track Model: 1idk.t06-w0.5.mod
% Single Track Model: 1nz6A.t06-w0.5.mod
% Single Track Model: 1yqtA.t06-w0.5.mod
% Single Track Model: 1q60A.t06-w0.5.mod
% Single Track Model: 1mtyG.t06-w0.5.mod
% Single Track Model: 1fc6A.t06-w0.5.mod
% Single Track Model: 1ul7A.t06-w0.5.mod
% Single Track Model: 2be1A.t06-w0.5.mod
% Single Track Model: 2g3bA.t06-w0.5.mod
% Single Track Model: 1u53A.t06-w0.5.mod
% Single Track Model: 1nekC.t06-w0.5.mod
% Single Track Model: 1f2tA.t06-w0.5.mod
% Single Track Model: 2d0tA.t06-w0.5.mod
% Single Track Model: 2c2nA.t06-w0.5.mod
% Single Track Model: 1d9uA.t06-w0.5.mod
% Single Track Model: 1x1nA.t06-w0.5.mod
% Single Track Model: 1z0jA.t06-w0.5.mod
% Single Track Model: 1j7gA.t06-w0.5.mod
% Single Track Model: 1xdnA.t06-w0.5.mod
% Single Track Model: 1mp6A.t06-w0.5.mod
% Single Track Model: 2gqrA.t06-w0.5.mod
% Single Track Model: 1w2lA.t06-w0.5.mod
% Single Track Model: 1sgpE.t06-w0.5.mod
% Single Track Model: 1poiA.t06-w0.5.mod
% Single Track Model: 2acvA.t06-w0.5.mod
% Single Track Model: 1stzA.t06-w0.5.mod
% Single Track Model: 1rdo1.t06-w0.5.mod
% Single Track Model: 1eciA.t06-w0.5.mod
% Single Track Model: 2f96A.t06-w0.5.mod
% Single Track Model: 2por.t06-w0.5.mod
% Single Track Model: 1ho8A.t06-w0.5.mod
% Single Track Model: 1lv4A.t06-w0.5.mod
% Single Track Model: 1zpxA.t06-w0.5.mod
% Single Track Model: 1vf5H.t06-w0.5.mod
% Single Track Model: 2mag.t06-w0.5.mod
% Single Track Model: 2bjbA.t06-w0.5.mod
% Single Track Model: 1wd5A.t06-w0.5.mod
% Single Track Model: 1xocA.t06-w0.5.mod
% Single Track Model: 1k0mA.t06-w0.5.mod
% Single Track Model: 1i2mA.t06-w0.5.mod
% Single Track Model: 2c0wA.t06-w0.5.mod
% Single Track Model: 2bbsA.t06-w0.5.mod
% Single Track Model: 1qo2A.t06-w0.5.mod
% Single Track Model: 1p0fA.t06-w0.5.mod
% Single Track Model: 1uz3A.t06-w0.5.mod
% Single Track Model: 1sseA.t06-w0.5.mod
% Single Track Model: 1hx0A.t06-w0.5.mod
% Single Track Model: 2axtM.t06-w0.5.mod
% Single Track Model: 1fygA.t06-w0.5.mod
% Single Track Model: 1q7hA.t06-w0.5.mod
% Single Track Model: 1ed1A.t06-w0.5.mod
% Single Track Model: 1s62A.t06-w0.5.mod
% Single Track Model: 1ituA.t06-w0.5.mod
% Single Track Model: 2apxA.t06-w0.5.mod
% Single Track Model: 1ymiA.t06-w0.5.mod
% Single Track Model: 1vqoD.t06-w0.5.mod
% Single Track Model: 1mp8A.t06-w0.5.mod
% Single Track Model: 1hz6A.t06-w0.5.mod
% Single Track Model: 1dpsA.t06-w0.5.mod
% Single Track Model: 1wlzA.t06-w0.5.mod
% Single Track Model: 1fvgA.t06-w0.5.mod
% Single Track Model: 2d1sA.t06-w0.5.mod
% Single Track Model: 1g8eA.t06-w0.5.mod
% Single Track Model: 1hic.t06-w0.5.mod
% Single Track Model: 1lmmA.t06-w0.5.mod
% Single Track Model: 1ne2A.t06-w0.5.mod
% Single Track Model: 1m7lA.t06-w0.5.mod
% Single Track Model: 1erjA.t06-w0.5.mod
% Single Track Model: 1u0kA.t06-w0.5.mod
% Single Track Model: 1nlwB.t06-w0.5.mod
% Single Track Model: 1sbxA.t06-w0.5.mod
% Single Track Model: 1xlyA.t06-w0.5.mod
% Single Track Model: 1aqcA.t06-w0.5.mod
% Single Track Model: 2ashA.t06-w0.5.mod
% Single Track Model: 3sil.t06-w0.5.mod
% Single Track Model: 1cv8.t06-w0.5.mod
% Single Track Model: 1jy4A.t06-w0.5.mod
% Single Track Model: 2gukA.t06-w0.5.mod
% Single Track Model: 1tu3F.t06-w0.5.mod
% Single Track Model: 1xmeC.t06-w0.5.mod
% Single Track Model: 1xffA.t06-w0.5.mod
% Single Track Model: 1fzvA.t06-w0.5.mod
% Single Track Model: 1v0eA.t06-w0.5.mod
% Single Track Model: 1y5eA.t06-w0.5.mod
% Single Track Model: 1iapA.t06-w0.5.mod
% Single Track Model: 1cuk.t06-w0.5.mod
% Single Track Model: 1peh.t06-w0.5.mod
% Single Track Model: 1k7hA.t06-w0.5.mod
% Single Track Model: 1mfgA.t06-w0.5.mod
% Single Track Model: 2fblA.t06-w0.5.mod
% Single Track Model: 1xawA.t06-w0.5.mod
% Single Track Model: 1psyA.t06-w0.5.mod
% Single Track Model: 1nigA.t06-w0.5.mod
% Single Track Model: 2a4vA.t06-w0.5.mod
% Single Track Model: 2bmfA.t06-w0.5.mod
% Single Track Model: 1g0oA.t06-w0.5.mod
% Single Track Model: 1xc0A.t06-w0.5.mod
% Single Track Model: 1qynA.t06-w0.5.mod
% Single Track Model: 1oaqL.t06-w0.5.mod
% Single Track Model: 1oi7A.t06-w0.5.mod
% Single Track Model: 1oihA.t06-w0.5.mod
% Single Track Model: 1rsoB.t06-w0.5.mod
% Single Track Model: 2f9nA.t06-w0.5.mod
% Single Track Model: 2a05A.t06-w0.5.mod
% Single Track Model: 1kolA.t06-w0.5.mod
% Single Track Model: 1s4bP.t06-w0.5.mod
% Single Track Model: 2cwpA.t06-w0.5.mod
% Single Track Model: 1tygB.t06-w0.5.mod
% Single Track Model: 1h2sA.t06-w0.5.mod
% Single Track Model: 1mqsB.t06-w0.5.mod
% Single Track Model: 2bh1A.t06-w0.5.mod
% Single Track Model: 1p9bA.t06-w0.5.mod
% Single Track Model: 2airB.t06-w0.5.mod
% Single Track Model: 1g2qA.t06-w0.5.mod
% Single Track Model: 1o6zA.t06-w0.5.mod
% Single Track Model: 1hfeS.t06-w0.5.mod
% Single Track Model: 1kv5A.t06-w0.5.mod
% Single Track Model: 1jw9B.t06-w0.5.mod
% Single Track Model: 1hdlA.t06-w0.5.mod
% Single Track Model: 1kmoA.t06-w0.5.mod
% Single Track Model: 1egpA.t06-w0.5.mod
% Single Track Model: 1r5tA.t06-w0.5.mod
% Single Track Model: 1e7uA.t06-w0.5.mod
% Single Track Model: 2cyjA.t06-w0.5.mod
% Single Track Model: 2g03A.t06-w0.5.mod
% Single Track Model: 1wurA.t06-w0.5.mod
% Single Track Model: 1vicA.t06-w0.5.mod
% Single Track Model: 1jnyA.t06-w0.5.mod
% Single Track Model: 2bbkL.t06-w0.5.mod
% Single Track Model: 1i8kB.t06-w0.5.mod
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% Single Track Model: 2fywA.t06-w0.5.mod
% Single Track Model: 1yceA.t06-w0.5.mod
% Single Track Model: 1my7A.t06-w0.5.mod
% Single Track Model: 2anxA.t06-w0.5.mod
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% Single Track Model: 1ihoA.t06-w0.5.mod
% Single Track Model: 1ry9A.t06-w0.5.mod
% Single Track Model: 1ub4A.t06-w0.5.mod
% Single Track Model: 1q3lA.t06-w0.5.mod
% Single Track Model: 1t6t1.t06-w0.5.mod
% Single Track Model: 1pvzA.t06-w0.5.mod
% Single Track Model: 1gz8A.t06-w0.5.mod
% Single Track Model: 2fjlA.t06-w0.5.mod
% Single Track Model: 1t5hX.t06-w0.5.mod
% Single Track Model: 1fjhA.t06-w0.5.mod
% Single Track Model: 1udxA.t06-w0.5.mod
% Single Track Model: 1obfO.t06-w0.5.mod
% Single Track Model: 1qhkA.t06-w0.5.mod
% Single Track Model: 1hyoA.t06-w0.5.mod
% Single Track Model: 1pu6A.t06-w0.5.mod
% Single Track Model: 1kqpA.t06-w0.5.mod
% Single Track Model: 1ejxB.t06-w0.5.mod
% Single Track Model: 1p1lA.t06-w0.5.mod
% Single Track Model: 1cl4A.t06-w0.5.mod
% Single Track Model: 1iruK.t06-w0.5.mod
% Single Track Model: 1wn2A.t06-w0.5.mod
% Single Track Model: 1uwmA.t06-w0.5.mod
% Single Track Model: 2if1.t06-w0.5.mod
% Single Track Model: 1qpaA.t06-w0.5.mod
% Single Track Model: 1shxA.t06-w0.5.mod
% Single Track Model: 1r31A.t06-w0.5.mod
% Single Track Model: 1dx5I.t06-w0.5.mod
% Single Track Model: 1oheA.t06-w0.5.mod
% Single Track Model: 1fk5A.t06-w0.5.mod
% Single Track Model: 1dbfA.t06-w0.5.mod
% Single Track Model: 2ae0X.t06-w0.5.mod
% Single Track Model: 1skvA.t06-w0.5.mod
% Single Track Model: 1pc6A.t06-w0.5.mod
% Single Track Model: 1em2A.t06-w0.5.mod
% Single Track Model: 1pidA.t06-w0.5.mod
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% Single Track Model: 1nddA.t06-w0.5.mod
% Single Track Model: 1txqA.t06-w0.5.mod
% Single Track Model: 2f69A.t06-w0.5.mod
% Single Track Model: 1h0hB.t06-w0.5.mod
% Single Track Model: 1wxrA.t06-w0.5.mod
% Single Track Model: 1jm1A.t06-w0.5.mod
% Single Track Model: 1doi.t06-w0.5.mod
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% Single Track Model: 1s6xA.t06-w0.5.mod
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% Single Track Model: 1ozjA.t06-w0.5.mod
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% Single Track Model: 1wa5B.t06-w0.5.mod
% Single Track Model: 1bm9A.t06-w0.5.mod
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% Single Track Model: 2cr8A.t06-w0.5.mod
% Single Track Model: 1unnC.t06-w0.5.mod
% Single Track Model: 1zoiA.t06-w0.5.mod
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% Single Track Model: 2f57A.t06-w0.5.mod
% Single Track Model: 1j99A.t06-w0.5.mod
% Single Track Model: 1pba.t06-w0.5.mod
% Single Track Model: 1e4fT.t06-w0.5.mod
% Single Track Model: 1n40A.t06-w0.5.mod
% Single Track Model: 1jmuB.t06-w0.5.mod
% Single Track Model: 1mgqA.t06-w0.5.mod
% Single Track Model: 2gcc.t06-w0.5.mod
% Single Track Model: 1vp2A.t06-w0.5.mod
% Single Track Model: 1wmiA.t06-w0.5.mod
% Single Track Model: 1e58A.t06-w0.5.mod
% Single Track Model: 1w3iA.t06-w0.5.mod
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% Single Track Model: 2cz1A.t06-w0.5.mod
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% Single Track Model: 1dxrH.t06-w0.5.mod
% Single Track Model: 1r3sA.t06-w0.5.mod
% Single Track Model: 1dg9A.t06-w0.5.mod
% Single Track Model: 1vl5A.t06-w0.5.mod
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% Single Track Model: 2fbyA.t06-w0.5.mod
% Single Track Model: 1v9nA.t06-w0.5.mod
% Single Track Model: 1ca1.t06-w0.5.mod
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% Single Track Model: 1y4mA.t06-w0.5.mod
% Single Track Model: 1vapA.t06-w0.5.mod
% Single Track Model: 1gteA.t06-w0.5.mod
% Single Track Model: 1ir6A.t06-w0.5.mod
% Single Track Model: 1xiyA.t06-w0.5.mod
% Single Track Model: 1lam.t06-w0.5.mod
% Single Track Model: 1unkA.t06-w0.5.mod
% Single Track Model: 1bbzA.t06-w0.5.mod
% Single Track Model: 1z82A.t06-w0.5.mod
% Single Track Model: 1tzyC.t06-w0.5.mod
% Single Track Model: 1ovlA.t06-w0.5.mod
% Single Track Model: 1nekD.t06-w0.5.mod
% Single Track Model: 1ua7A.t06-w0.5.mod
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% Single Track Model: 1c9kA.t06-w0.5.mod
% Single Track Model: 2bcfA.t06-w0.5.mod
% Single Track Model: 3htsB.t06-w0.5.mod
% Single Track Model: 1lfpA.t06-w0.5.mod
% Single Track Model: 2a74B.t06-w0.5.mod
% Single Track Model: 1nni1.t06-w0.5.mod
% Single Track Model: 1evsA.t06-w0.5.mod
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% Single Track Model: 1hnjA.t06-w0.5.mod
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% Single Track Model: 1x3qA.t06-w0.5.mod
% Single Track Model: 1jfbA.t06-w0.5.mod
% Single Track Model: 1mijA.t06-w0.5.mod
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% Single Track Model: 2bw2A.t06-w0.5.mod
% Single Track Model: 1pk6A.t06-w0.5.mod
% Single Track Model: 1f8eA.t06-w0.5.mod
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% Single Track Model: 1dgfA.t06-w0.5.mod
% Single Track Model: 2atrA.t06-w0.5.mod
% Single Track Model: 1f9zA.t06-w0.5.mod
% Single Track Model: 1i8dA.t06-w0.5.mod
% Single Track Model: 1pjmA.t06-w0.5.mod
% Single Track Model: 1ixcA.t06-w0.5.mod
% Single Track Model: 1t9hA.t06-w0.5.mod
% Single Track Model: 1h9dB.t06-w0.5.mod
% Single Track Model: 1u94A.t06-w0.5.mod
% Single Track Model: 2gfaA.t06-w0.5.mod
% Single Track Model: 1tl2A.t06-w0.5.mod
% Single Track Model: 1co4A.t06-w0.5.mod
% Single Track Model: 1v4vA.t06-w0.5.mod
% Single Track Model: 1u2mA.t06-w0.5.mod
% Single Track Model: 1wy2A.t06-w0.5.mod
% Single Track Model: 2bghA.t06-w0.5.mod
% Single Track Model: 1iuaA.t06-w0.5.mod
% Single Track Model: 1wg8A.t06-w0.5.mod
% Single Track Model: 1wd7A.t06-w0.5.mod
% Single Track Model: 1ocsA.t06-w0.5.mod
% Single Track Model: 1syxB.t06-w0.5.mod
% Single Track Model: 1gakA.t06-w0.5.mod
% Single Track Model: 1wv9A.t06-w0.5.mod
% Single Track Model: 1lbvA.t06-w0.5.mod
% Single Track Model: 1y60A.t06-w0.5.mod
% Single Track Model: 1wmuA.t06-w0.5.mod
% Single Track Model: 1luzA.t06-w0.5.mod
% Single Track Model: 1hjrA.t06-w0.5.mod
% Single Track Model: 1un7A.t06-w0.5.mod
% Single Track Model: 2bykB.t06-w0.5.mod
% Single Track Model: 1erv.t06-w0.5.mod
% Single Track Model: 1snnA.t06-w0.5.mod
% Single Track Model: 1cozA.t06-w0.5.mod
% Single Track Model: 1bku.t06-w0.5.mod
% Single Track Model: 1n0lA.t06-w0.5.mod
% Single Track Model: 1tq4A.t06-w0.5.mod
% Single Track Model: 1b8aA.t06-w0.5.mod
% Single Track Model: 2ex4A.t06-w0.5.mod
% Single Track Model: 1zb9A.t06-w0.5.mod
% Single Track Model: 1u0sA.t06-w0.5.mod
% Single Track Model: 1f7cA.t06-w0.5.mod
% Single Track Model: 1dywA.t06-w0.5.mod
% Single Track Model: 1oafA.t06-w0.5.mod
% Single Track Model: 1g57A.t06-w0.5.mod
% Single Track Model: 2c5qA.t06-w0.5.mod
% Single Track Model: 1s6cA.t06-w0.5.mod
% Single Track Model: 2g76A.t06-w0.5.mod
% Single Track Model: 2g3aA.t06-w0.5.mod
% Single Track Model: 1gp6A.t06-w0.5.mod
% Single Track Model: 1rz2A.t06-w0.5.mod
% Single Track Model: 2bblA.t06-w0.5.mod
% Single Track Model: 1pl8A.t06-w0.5.mod
% Single Track Model: 1uwwA.t06-w0.5.mod
% Single Track Model: 1rj8A.t06-w0.5.mod
% Single Track Model: 1e3oC.t06-w0.5.mod
% Single Track Model: 1ynlH.t06-w0.5.mod
% Single Track Model: 1rkxA.t06-w0.5.mod
% Single Track Model: 1cfzA.t06-w0.5.mod
% Single Track Model: 2cy3.t06-w0.5.mod
% Single Track Model: 1fryA.t06-w0.5.mod
% Single Track Model: 2bl0C.t06-w0.5.mod
% Single Track Model: 1yp5A.t06-w0.5.mod
% Single Track Model: 1n13B.t06-w0.5.mod
% Single Track Model: 1totA.t06-w0.5.mod
% Single Track Model: 1eerA.t06-w0.5.mod
% Single Track Model: 1lm8B.t06-w0.5.mod
% Single Track Model: 2bz1A.t06-w0.5.mod
% Single Track Model: 1zj8A.t06-w0.5.mod
% Single Track Model: 1ppjG.t06-w0.5.mod
% Single Track Model: 1o7jA.t06-w0.5.mod
% Single Track Model: 1cb8A.t06-w0.5.mod
% Single Track Model: 1hpcA.t06-w0.5.mod
% Single Track Model: 1n67A.t06-w0.5.mod
% Single Track Model: 1ea7A.t06-w0.5.mod
% Single Track Model: 1f00I.t06-w0.5.mod
% Single Track Model: 1vf8A.t06-w0.5.mod
% Single Track Model: 2cioA.t06-w0.5.mod
% Single Track Model: 2d2yA.t06-w0.5.mod
% Single Track Model: 1pueE.t06-w0.5.mod
% Single Track Model: 1sg4A.t06-w0.5.mod
% Single Track Model: 1usgA.t06-w0.5.mod
% Single Track Model: 1czaN.t06-w0.5.mod
% Single Track Model: 1zhsA.t06-w0.5.mod
% Single Track Model: 1k3mA.t06-w0.5.mod
% Single Track Model: 1trb.t06-w0.5.mod
% Single Track Model: 1zkjA.t06-w0.5.mod
% Single Track Model: 1fp0A.t06-w0.5.mod
% Single Track Model: 1se8A.t06-w0.5.mod
% Single Track Model: 2cq2A.t06-w0.5.mod
% Single Track Model: 2apjA.t06-w0.5.mod
% Single Track Model: 1pot.t06-w0.5.mod
% Single Track Model: 1emzA.t06-w0.5.mod
% Single Track Model: 2fs3A.t06-w0.5.mod
% Single Track Model: 2genA.t06-w0.5.mod
% Single Track Model: 1ppo.t06-w0.5.mod
% Single Track Model: 1u8bA.t06-w0.5.mod
% Single Track Model: 1s96A.t06-w0.5.mod
% Single Track Model: 1oznA.t06-w0.5.mod
% Single Track Model: 1elwA.t06-w0.5.mod
% Single Track Model: 2b8mA.t06-w0.5.mod
% Single Track Model: 1ujwB.t06-w0.5.mod
% Single Track Model: 1rk6A.t06-w0.5.mod
% Single Track Model: 1u7kA.t06-w0.5.mod
% Single Track Model: 1w7jB.t06-w0.5.mod
% Single Track Model: 1lp9E.t06-w0.5.mod
% Single Track Model: 1nwaA.t06-w0.5.mod
% Single Track Model: 1vdiA.t06-w0.5.mod
% Single Track Model: 1j83A.t06-w0.5.mod
% Single Track Model: 1qh8A.t06-w0.5.mod
% Single Track Model: 1w44A.t06-w0.5.mod
% Single Track Model: 1keaA.t06-w0.5.mod
% Single Track Model: 2fn0A.t06-w0.5.mod
% Single Track Model: 1vraA.t06-w0.5.mod
% Single Track Model: 2cg4A.t06-w0.5.mod
% Single Track Model: 1vphA.t06-w0.5.mod
% Single Track Model: 1pn2A.t06-w0.5.mod
% Single Track Model: 1l2mA.t06-w0.5.mod
% Single Track Model: 1o50A.t06-w0.5.mod
% Single Track Model: 2f6kA.t06-w0.5.mod
% Single Track Model: 2be3A.t06-w0.5.mod
% Single Track Model: 1yx0A.t06-w0.5.mod
% Single Track Model: 1nkd.t06-w0.5.mod
% Single Track Model: 1t71A.t06-w0.5.mod
% Single Track Model: 1b6rA.t06-w0.5.mod
% Single Track Model: 1hs6A.t06-w0.5.mod
% Single Track Model: 1mo0A.t06-w0.5.mod
% Single Track Model: 1jltB.t06-w0.5.mod
% Single Track Model: 1kl1A.t06-w0.5.mod
% Single Track Model: 1vrvA.t06-w0.5.mod
% Single Track Model: 1p4oA.t06-w0.5.mod
% Single Track Model: 1hq0A.t06-w0.5.mod
% Single Track Model: 1ajsA.t06-w0.5.mod
% Single Track Model: 1s50A.t06-w0.5.mod
% Single Track Model: 1cpq.t06-w0.5.mod
% Single Track Model: 1y4eA.t06-w0.5.mod
% Single Track Model: 1o54A.t06-w0.5.mod
% Single Track Model: 1oruA.t06-w0.5.mod
% Single Track Model: 1cqxA.t06-w0.5.mod
% Single Track Model: 1lv3A.t06-w0.5.mod
% Single Track Model: 2bnuB.t06-w0.5.mod
% Single Track Model: 1lmb3.t06-w0.5.mod
% Single Track Model: 1otsA.t06-w0.5.mod
% Single Track Model: 1wleA.t06-w0.5.mod
% Single Track Model: 1vzmA.t06-w0.5.mod
% Single Track Model: 1wdjA.t06-w0.5.mod
% Single Track Model: 1qz5A.t06-w0.5.mod
% Single Track Model: 2gefA.t06-w0.5.mod
% Single Track Model: 1rfeA.t06-w0.5.mod
% Single Track Model: 1qkmA.t06-w0.5.mod
% Single Track Model: 1mdbA.t06-w0.5.mod
% Single Track Model: 1nm2A.t06-w0.5.mod
% Single Track Model: 2ap1A.t06-w0.5.mod
% Single Track Model: 1yy6A.t06-w0.5.mod
% Single Track Model: 2bl0B.t06-w0.5.mod
% Single Track Model: 1euwA.t06-w0.5.mod
% Single Track Model: 1zymA.t06-w0.5.mod
% Single Track Model: 1pt6A.t06-w0.5.mod
% Single Track Model: 1p7tA.t06-w0.5.mod
% Single Track Model: 1j0sA.t06-w0.5.mod
% Single Track Model: 1wt6A.t06-w0.5.mod
% Single Track Model: 1a59.t06-w0.5.mod
% Single Track Model: 1mkzA.t06-w0.5.mod
% Single Track Model: 1bl0A.t06-w0.5.mod
% Single Track Model: 1i88A.t06-w0.5.mod
% Single Track Model: 1eljA.t06-w0.5.mod
% Single Track Model: 1gw5A.t06-w0.5.mod
% Single Track Model: 1krn.t06-w0.5.mod
% Single Track Model: 1qgeE.t06-w0.5.mod
% Single Track Model: 1zhrA.t06-w0.5.mod
% Single Track Model: 2gkpA.t06-w0.5.mod
% Single Track Model: 1cyx.t06-w0.5.mod
% Single Track Model: 1p1mA.t06-w0.5.mod
% Single Track Model: 1vc1A.t06-w0.5.mod
% Single Track Model: 1vs0A.t06-w0.5.mod
% Single Track Model: 1n9pA.t06-w0.5.mod
% Single Track Model: 1ixtA.t06-w0.5.mod
% Single Track Model: 1om4A.t06-w0.5.mod
% Single Track Model: 1erw.t06-w0.5.mod
% Single Track Model: 2c78A.t06-w0.5.mod
% Single Track Model: 1dszA.t06-w0.5.mod
% Single Track Model: 1j34A.t06-w0.5.mod
% Single Track Model: 1vziA.t06-w0.5.mod
% Single Track Model: 2g58A.t06-w0.5.mod
% Single Track Model: 2f9cA.t06-w0.5.mod
% Single Track Model: 2fpeA.t06-w0.5.mod
% Single Track Model: 1q0qA.t06-w0.5.mod
% Single Track Model: 2ex5A.t06-w0.5.mod
% Single Track Model: 2ahyA.t06-w0.5.mod
% Single Track Model: 1hllA.t06-w0.5.mod
% Single Track Model: 1lnwA.t06-w0.5.mod
% Single Track Model: 1m5q1.t06-w0.5.mod
% Single Track Model: 1f2vA.t06-w0.5.mod
% Single Track Model: 1h6pA.t06-w0.5.mod
% Single Track Model: 1t3gA.t06-w0.5.mod
% Single Track Model: 1oacA.t06-w0.5.mod
% Single Track Model: 2gtrA.t06-w0.5.mod
% Single Track Model: 1dqaA.t06-w0.5.mod
% Single Track Model: 1of5A.t06-w0.5.mod
% Single Track Model: 2ex0A.t06-w0.5.mod
% Single Track Model: 1xmpA.t06-w0.5.mod
% Single Track Model: 2gjgA.t06-w0.5.mod
% Single Track Model: 1txnA.t06-w0.5.mod
% Single Track Model: 1mdc.t06-w0.5.mod
% Single Track Model: 1gotB.t06-w0.5.mod
% Single Track Model: 1ur6B.t06-w0.5.mod
% Single Track Model: 1vhvA.t06-w0.5.mod
% Single Track Model: 1xzoA.t06-w0.5.mod
% Single Track Model: 1esc.t06-w0.5.mod
% Single Track Model: 1r2jA.t06-w0.5.mod
% Single Track Model: 1xksA.t06-w0.5.mod
% Single Track Model: 1fseA.t06-w0.5.mod
% Single Track Model: 1i3zA.t06-w0.5.mod
% Single Track Model: 2fu4A.t06-w0.5.mod
% Single Track Model: 2a41C.t06-w0.5.mod
% Single Track Model: 1q9uA.t06-w0.5.mod
% Single Track Model: 1ku0A.t06-w0.5.mod
% Single Track Model: 2fvvA.t06-w0.5.mod
% Single Track Model: 1ve3A.t06-w0.5.mod
% Single Track Model: 2ch0A.t06-w0.5.mod
% Single Track Model: 1rl6A.t06-w0.5.mod
% Single Track Model: 3pcgM.t06-w0.5.mod
% Single Track Model: 1lqvC.t06-w0.5.mod
% Single Track Model: 2bv2A.t06-w0.5.mod
% Single Track Model: 1dyr.t06-w0.5.mod
% Single Track Model: 2d1uA.t06-w0.5.mod
% Single Track Model: 1xu2R.t06-w0.5.mod
% Single Track Model: 1nxmA.t06-w0.5.mod
% Single Track Model: 1eaqA.t06-w0.5.mod
% Single Track Model: 1r85A.t06-w0.5.mod
% Single Track Model: 2fqaA.t06-w0.5.mod
% Single Track Model: 1l5wA.t06-w0.5.mod
% Single Track Model: 1hp1A.t06-w0.5.mod
% Single Track Model: 3seb.t06-w0.5.mod
% Single Track Model: 1p5vB.t06-w0.5.mod
% Single Track Model: 1a0p.t06-w0.5.mod
% Single Track Model: 1nswA.t06-w0.5.mod
% Single Track Model: 2fug1.t06-w0.5.mod
% Single Track Model: 2bkkA.t06-w0.5.mod
% Single Track Model: 2ajuL.t06-w0.5.mod
% Single Track Model: 1kgcD.t06-w0.5.mod
% Single Track Model: 2dd8S.t06-w0.5.mod
% Single Track Model: 1o97C.t06-w0.5.mod
% Single Track Model: 1zdnA.t06-w0.5.mod
% Single Track Model: 1u00A.t06-w0.5.mod
% Single Track Model: 2fueA.t06-w0.5.mod
% Single Track Model: 2aenA.t06-w0.5.mod
% Single Track Model: 1bed.t06-w0.5.mod
% Single Track Model: 1b00A.t06-w0.5.mod
% Single Track Model: 1mw9X.t06-w0.5.mod
% Single Track Model: 1wpoA.t06-w0.5.mod
% Single Track Model: 1kqfC.t06-w0.5.mod
% Single Track Model: 2fbwC.t06-w0.5.mod
% Single Track Model: 1ni9A.t06-w0.5.mod
% Single Track Model: 1knwA.t06-w0.5.mod
% Single Track Model: 1r8iA.t06-w0.5.mod
% Single Track Model: 1vqtA.t06-w0.5.mod
% Single Track Model: 1l6xB.t06-w0.5.mod
% Single Track Model: 1pguA.t06-w0.5.mod
% Single Track Model: 1kshB.t06-w0.5.mod
% Single Track Model: 2cx5A.t06-w0.5.mod
% Single Track Model: 2fftA.t06-w0.5.mod
% Single Track Model: 1v9vA.t06-w0.5.mod
% Single Track Model: 2al1A.t06-w0.5.mod
% Single Track Model: 1rf6A.t06-w0.5.mod
% Single Track Model: 1y7yA.t06-w0.5.mod
% Single Track Model: 1zfuA.t06-w0.5.mod
% Single Track Model: 1hq1A.t06-w0.5.mod
% Single Track Model: 1tvfA.t06-w0.5.mod
% Single Track Model: 1wcv1.t06-w0.5.mod
% Single Track Model: 1wojA.t06-w0.5.mod
% Single Track Model: 1ea5A.t06-w0.5.mod
% Single Track Model: 1c5eA.t06-w0.5.mod
% Single Track Model: 1xr4A.t06-w0.5.mod
% Single Track Model: 1jfiA.t06-w0.5.mod
% Single Track Model: 1zcjA.t06-w0.5.mod
% Single Track Model: 1ivg.t06-w0.5.mod
% Single Track Model: 1i5kC.t06-w0.5.mod
% Single Track Model: 1l8nA.t06-w0.5.mod
% Single Track Model: 2fctA.t06-w0.5.mod
% Single Track Model: 1v1aA.t06-w0.5.mod
% Single Track Model: 1d0qA.t06-w0.5.mod
% Single Track Model: 1ylkA.t06-w0.5.mod
% Single Track Model: 1iqrA.t06-w0.5.mod
% Single Track Model: 1llp.t06-w0.5.mod
% Single Track Model: 2gclA.t06-w0.5.mod
% Single Track Model: 2a2kA.t06-w0.5.mod
% Single Track Model: 1nzaA.t06-w0.5.mod
% Single Track Model: 1ail.t06-w0.5.mod
% Single Track Model: 1wqsA.t06-w0.5.mod
% Single Track Model: 1l2wI.t06-w0.5.mod
% Single Track Model: 1dkiA.t06-w0.5.mod
% Single Track Model: 1lm8V.t06-w0.5.mod
% Single Track Model: 1oyzA.t06-w0.5.mod
% Single Track Model: 1bouB.t06-w0.5.mod
% Single Track Model: 2ffwA.t06-w0.5.mod
% Single Track Model: 1q59A.t06-w0.5.mod
% Single Track Model: 1ds1A.t06-w0.5.mod
% Single Track Model: 1dzlA.t06-w0.5.mod
% Single Track Model: 2d7nA.t06-w0.5.mod
% Single Track Model: 1pjxA.t06-w0.5.mod
% Single Track Model: 1cd3B.t06-w0.5.mod
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% Single Track Model: 1j05A.t06-w0.5.mod
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% Single Track Model: 1iba.t06-w0.5.mod
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% Single Track Model: 2d69A.t06-w0.5.mod
% Single Track Model: 1clvI.t06-w0.5.mod
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% Single Track Model: 1gyxA.t06-w0.5.mod
% Single Track Model: 1pf5A.t06-w0.5.mod
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% Single Track Model: 1tueB.t06-w0.5.mod
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% Single Track Model: 1j2zA.t06-w0.5.mod
% Single Track Model: 1eyhA.t06-w0.5.mod
% Single Track Model: 1d3vA.t06-w0.5.mod
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% Single Track Model: 2aw4P.t06-w0.5.mod
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% Single Track Model: 1ks9A.t06-w0.5.mod
% Single Track Model: 2booA.t06-w0.5.mod
% Single Track Model: 1vqoY.t06-w0.5.mod
% Single Track Model: 1vns.t06-w0.5.mod
% Single Track Model: 2hlcA.t06-w0.5.mod
% Single Track Model: 1ez3A.t06-w0.5.mod
% Single Track Model: 1q0uA.t06-w0.5.mod
% Single Track Model: 1zcxA.t06-w0.5.mod
% Single Track Model: 1pk6B.t06-w0.5.mod
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% Single Track Model: 1lr7A.t06-w0.5.mod
% Single Track Model: 1bby.t06-w0.5.mod
% Single Track Model: 1cd9B.t06-w0.5.mod
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% Single Track Model: 1t1jA.t06-w0.5.mod
% Single Track Model: 1oh4A.t06-w0.5.mod
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% Single Track Model: 1zvdA.t06-w0.5.mod
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% Single Track Model: 1yd9A.t06-w0.5.mod
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% Single Track Model: 2fb1A.t06-w0.5.mod
% Single Track Model: 1qzmA.t06-w0.5.mod
% Single Track Model: 1ogqA.t06-w0.5.mod
% Single Track Model: 1m5nQ.t06-w0.5.mod
% Single Track Model: 1v6sA.t06-w0.5.mod
% Single Track Model: 1zpdA.t06-w0.5.mod
% Single Track Model: 1go9A.t06-w0.5.mod
% Single Track Model: 1uocA.t06-w0.5.mod
% Single Track Model: 1t4wA.t06-w0.5.mod
% Single Track Model: 1gjjA.t06-w0.5.mod
% Single Track Model: 2avyM.t06-w0.5.mod
% Single Track Model: 2ethA.t06-w0.5.mod
% Single Track Model: 1vfiA.t06-w0.5.mod
% Single Track Model: 1r5iD.t06-w0.5.mod
% Single Track Model: 1dzkA.t06-w0.5.mod
% Single Track Model: 1y0nA.t06-w0.5.mod
% Single Track Model: 1q67A.t06-w0.5.mod
% Single Track Model: 1m32A.t06-w0.5.mod
% Single Track Model: 1xrdA.t06-w0.5.mod
% Single Track Model: 1ed8A.t06-w0.5.mod
% Single Track Model: 2fsrA.t06-w0.5.mod
% Single Track Model: 1mvuA.t06-w0.5.mod
% Single Track Model: 1zczA.t06-w0.5.mod
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% Single Track Model: 1tvlA.t06-w0.5.mod
% Single Track Model: 1iujA.t06-w0.5.mod
% Single Track Model: 1lw1A.t06-w0.5.mod
% Single Track Model: 1u5kA.t06-w0.5.mod
% Single Track Model: 2d1yA.t06-w0.5.mod
% Single Track Model: 1jtvA.t06-w0.5.mod
% Single Track Model: 1z0xA.t06-w0.5.mod
% Single Track Model: 1o6dA.t06-w0.5.mod
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% Single Track Model: 1j98A.t06-w0.5.mod
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% Single Track Model: 1ytlA.t06-w0.5.mod
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% Single Track Model: 1b9pA.t06-w0.5.mod
% Single Track Model: 1h65A.t06-w0.5.mod
% Single Track Model: 1v9yA.t06-w0.5.mod
% Single Track Model: 1knyA.t06-w0.5.mod
% Single Track Model: 1ycc.t06-w0.5.mod
% Single Track Model: 1wazA.t06-w0.5.mod
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% Single Track Model: 1xi1A.t06-w0.5.mod
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% Single Track Model: 1oaoA.t06-w0.5.mod
% Single Track Model: 1wwiA.t06-w0.5.mod
% Single Track Model: 1twfH.t06-w0.5.mod
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% Single Track Model: 1srvA.t06-w0.5.mod
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% Single Track Model: 1q0gA.t06-w0.5.mod
% Single Track Model: 1l7vA.t06-w0.5.mod
% Single Track Model: 1w2iA.t06-w0.5.mod
% Single Track Model: 1ga8A.t06-w0.5.mod
% Single Track Model: 1m2kA.t06-w0.5.mod
% Single Track Model: 2axtE.t06-w0.5.mod
% Single Track Model: 1jalA.t06-w0.5.mod
% Single Track Model: 2b1eA.t06-w0.5.mod
% Single Track Model: 1cc8A.t06-w0.5.mod
% Single Track Model: 2afbA.t06-w0.5.mod
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% Single Track Model: 2bhwA.t06-w0.5.mod
% Single Track Model: 2boqA.t06-w0.5.mod
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% Single Track Model: 1ki0A.t06-w0.5.mod
% Single Track Model: 1wy7A.t06-w0.5.mod
% Single Track Model: 1wf7A.t06-w0.5.mod
% Single Track Model: 1fl1A.t06-w0.5.mod
% Single Track Model: 1bolA.t06-w0.5.mod
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% Single Track Model: 2glzA.t06-w0.5.mod
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% Single Track Model: 1hhnA.t06-w0.5.mod
% Single Track Model: 1molA.t06-w0.5.mod
% Single Track Model: 1avoA.t06-w0.5.mod
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% Single Track Model: 1mk4A.t06-w0.5.mod
% Single Track Model: 2fi0A.t06-w0.5.mod
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% Single Track Model: 2bsyA.t06-w0.5.mod
% Single Track Model: 2b7aA.t06-w0.5.mod
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% Single Track Model: 2axtF.t06-w0.5.mod
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% Single Track Model: 1abz.t06-w0.5.mod
% Single Track Model: 1mtpB.t06-w0.5.mod
% Single Track Model: 1h9oA.t06-w0.5.mod
% Single Track Model: 1zdzA.t06-w0.5.mod
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% Single Track Model: 2bwfA.t06-w0.5.mod
% Single Track Model: 1twfC.t06-w0.5.mod
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% Single Track Model: 1fvpA.t06-w0.5.mod
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% Single Track Model: 1n8vA.t06-w0.5.mod
% Single Track Model: 1qzzA.t06-w0.5.mod
% Single Track Model: 1gj7B.t06-w0.5.mod
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% Single Track Model: 1f1uA.t06-w0.5.mod
% Single Track Model: 1x7dA.t06-w0.5.mod
% Single Track Model: 1k5cA.t06-w0.5.mod
% Single Track Model: 1b8wA.t06-w0.5.mod
% Single Track Model: 1dj0A.t06-w0.5.mod
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% Single Track Model: 1q25A.t06-w0.5.mod
% Single Track Model: 1sek.t06-w0.5.mod
% Single Track Model: 1iy8A.t06-w0.5.mod
% Single Track Model: 1zx5A.t06-w0.5.mod
% Single Track Model: 1x52A.t06-w0.5.mod
% Single Track Model: 1h2sB.t06-w0.5.mod
% Single Track Model: 1gx5A.t06-w0.5.mod
% Single Track Model: 1hztA.t06-w0.5.mod
% Single Track Model: 1xmbA.t06-w0.5.mod
% Single Track Model: 1fpoA.t06-w0.5.mod
% Single Track Model: 1pcxA.t06-w0.5.mod
% Single Track Model: 1pc3A.t06-w0.5.mod
% Single Track Model: 1mspA.t06-w0.5.mod
% Single Track Model: 830cA.t06-w0.5.mod
% Single Track Model: 1js3A.t06-w0.5.mod
% Single Track Model: 1nf3C.t06-w0.5.mod
% Single Track Model: 2c5uA.t06-w0.5.mod
% Single Track Model: 1z21A.t06-w0.5.mod
% Single Track Model: 1t50A.t06-w0.5.mod
% Single Track Model: 1o8xA.t06-w0.5.mod
% Single Track Model: 1nulA.t06-w0.5.mod
% Single Track Model: 1u7bA.t06-w0.5.mod
% Single Track Model: 2gfoA.t06-w0.5.mod
% Single Track Model: 1yhvA.t06-w0.5.mod
% Single Track Model: 1tc1A.t06-w0.5.mod
% Single Track Model: 1bhe.t06-w0.5.mod
% Single Track Model: 1bb1C.t06-w0.5.mod
% Single Track Model: 1izmA.t06-w0.5.mod
% Single Track Model: 1zavA.t06-w0.5.mod
% Single Track Model: 1v7pC.t06-w0.5.mod
% Single Track Model: 1t13A.t06-w0.5.mod
% Single Track Model: 5csmA.t06-w0.5.mod
% Single Track Model: 1lla.t06-w0.5.mod
% Single Track Model: 1fe0A.t06-w0.5.mod
% Single Track Model: 1roaA.t06-w0.5.mod
% Single Track Model: 1ctf.t06-w0.5.mod
% Single Track Model: 2cvbA.t06-w0.5.mod
% Single Track Model: 1wkoA.t06-w0.5.mod
% Single Track Model: 2cu3A.t06-w0.5.mod
% Single Track Model: 2pth.t06-w0.5.mod
% Single Track Model: 1lucA.t06-w0.5.mod
% Single Track Model: 1w5tA.t06-w0.5.mod
% Single Track Model: 1sg6A.t06-w0.5.mod
% Single Track Model: 1yhlA.t06-w0.5.mod
% Single Track Model: 1sr4B.t06-w0.5.mod
% Single Track Model: 1hn0A.t06-w0.5.mod
% Single Track Model: 2fswA.t06-w0.5.mod
% Single Track Model: 1u4nA.t06-w0.5.mod
% Single Track Model: 1nf2A.t06-w0.5.mod
% Single Track Model: 1mrj.t06-w0.5.mod
% Single Track Model: 2b0oE.t06-w0.5.mod
% Single Track Model: 1dmlB.t06-w0.5.mod
% Single Track Model: 1ctt.t06-w0.5.mod
% Single Track Model: 1o1xA.t06-w0.5.mod
% Single Track Model: 1b5l.t06-w0.5.mod
% Single Track Model: 1utxA.t06-w0.5.mod
% Single Track Model: 1wp8A.t06-w0.5.mod
% Single Track Model: 1xnkA.t06-w0.5.mod
% Single Track Model: 1tzyB.t06-w0.5.mod
% Single Track Model: 2gi9A.t06-w0.5.mod
% Single Track Model: 1t6lA.t06-w0.5.mod
% Single Track Model: 1jmcA.t06-w0.5.mod
% Single Track Model: 1mr1C.t06-w0.5.mod
% Single Track Model: 4pgaA.t06-w0.5.mod
% Single Track Model: 2cc0A.t06-w0.5.mod
% Single Track Model: 1tvdA.t06-w0.5.mod
% Single Track Model: 1oa8A.t06-w0.5.mod
% Single Track Model: 2cbzA.t06-w0.5.mod
% Single Track Model: 1kn1B.t06-w0.5.mod
% Single Track Model: 1qwtA.t06-w0.5.mod
% Single Track Model: 1w23A.t06-w0.5.mod
% Single Track Model: 1hp9A.t06-w0.5.mod
% Single Track Model: 2f8aA.t06-w0.5.mod
% Single Track Model: 1x67A.t06-w0.5.mod
% Single Track Model: 2bhmA.t06-w0.5.mod
% Single Track Model: 1szqA.t06-w0.5.mod
% Single Track Model: 1dv0A.t06-w0.5.mod
% Single Track Model: 2b8iA.t06-w0.5.mod
% Single Track Model: 1toaA.t06-w0.5.mod
% Single Track Model: 1siqA.t06-w0.5.mod
% Single Track Model: 2g7zA.t06-w0.5.mod
% Single Track Model: 1v5dA.t06-w0.5.mod
% Single Track Model: 1ihgA.t06-w0.5.mod
% Single Track Model: 2bhoA.t06-w0.5.mod
% Single Track Model: 1r1uA.t06-w0.5.mod
% Single Track Model: 1mi8A.t06-w0.5.mod
% Single Track Model: 1u2hA.t06-w0.5.mod
% Single Track Model: 1lw7A.t06-w0.5.mod
% Single Track Model: 1xkpC.t06-w0.5.mod
% Single Track Model: 1dtdB.t06-w0.5.mod
% Single Track Model: 2gc9A.t06-w0.5.mod
% Single Track Model: 1v5aA.t06-w0.5.mod
% Single Track Model: 1p2hA.t06-w0.5.mod
% Single Track Model: 1inlA.t06-w0.5.mod
% Single Track Model: 2awiA.t06-w0.5.mod
% Single Track Model: 2aa1A.t06-w0.5.mod
% Single Track Model: 1q5zA.t06-w0.5.mod
% Single Track Model: 2dexX.t06-w0.5.mod
% Single Track Model: 1wy5A.t06-w0.5.mod
% Single Track Model: 1h5wA.t06-w0.5.mod
% Single Track Model: 1z67A.t06-w0.5.mod
% Single Track Model: 1vkbA.t06-w0.5.mod
% Single Track Model: 1hx1B.t06-w0.5.mod
% Single Track Model: 1xn5A.t06-w0.5.mod
% Single Track Model: 1sf8A.t06-w0.5.mod
% Single Track Model: 1xsvA.t06-w0.5.mod
% Single Track Model: 1irdB.t06-w0.5.mod
% Single Track Model: 1t6nA.t06-w0.5.mod
% Single Track Model: 1kwmA.t06-w0.5.mod
% Single Track Model: 1twdA.t06-w0.5.mod
% Single Track Model: 1mr7A.t06-w0.5.mod
% Single Track Model: 1zc3B.t06-w0.5.mod
% Single Track Model: 1bn7A.t06-w0.5.mod
% Single Track Model: 1puc.t06-w0.5.mod
% Single Track Model: 1fs5A.t06-w0.5.mod
% Single Track Model: 1w8oA.t06-w0.5.mod
% Single Track Model: 1a91.t06-w0.5.mod
% Single Track Model: 1lc0A.t06-w0.5.mod
% Single Track Model: 1kxlA.t06-w0.5.mod
% Single Track Model: 1iv8A.t06-w0.5.mod
% Single Track Model: 1yfbA.t06-w0.5.mod
% Single Track Model: 1jmuA.t06-w0.5.mod
% Single Track Model: 4tmkA.t06-w0.5.mod
% Single Track Model: 1mkiA.t06-w0.5.mod
% Single Track Model: 1ursA.t06-w0.5.mod
% Single Track Model: 1xfrA.t06-w0.5.mod
% Single Track Model: 1q35A.t06-w0.5.mod
% Single Track Model: 2cpgA.t06-w0.5.mod
% Single Track Model: 1xmqV.t06-w0.5.mod
% Single Track Model: 1fipA.t06-w0.5.mod
% Single Track Model: 1mctI.t06-w0.5.mod
% Single Track Model: 1msoA.t06-w0.5.mod
% Single Track Model: 2cy2A.t06-w0.5.mod
% Single Track Model: 1wcdJ.t06-w0.5.mod
% Single Track Model: 1vyoA.t06-w0.5.mod
% Single Track Model: 1tc5A.t06-w0.5.mod
% Single Track Model: 1kzfA.t06-w0.5.mod
% Single Track Model: 1hs7A.t06-w0.5.mod
% Single Track Model: 1iijA.t06-w0.5.mod
% Single Track Model: 1vhh.t06-w0.5.mod
% Single Track Model: 1o1zA.t06-w0.5.mod
% Single Track Model: 1zgzA.t06-w0.5.mod
% Single Track Model: 1g291.t06-w0.5.mod
% Single Track Model: 1m93C.t06-w0.5.mod
% Single Track Model: 2ff4A.t06-w0.5.mod
% Single Track Model: 1rvkA.t06-w0.5.mod
% Single Track Model: 1f5vA.t06-w0.5.mod
% Single Track Model: 1zh5A.t06-w0.5.mod
% Single Track Model: 2dg5A.t06-w0.5.mod
% Single Track Model: 1pbyB.t06-w0.5.mod
% Single Track Model: 1b3aA.t06-w0.5.mod
% Single Track Model: 1f7zA.t06-w0.5.mod
% Single Track Model: 1qd6C.t06-w0.5.mod
% Single Track Model: 2fyxA.t06-w0.5.mod
% Single Track Model: 1pb7A.t06-w0.5.mod
% Single Track Model: 1dhn.t06-w0.5.mod
% Single Track Model: 1wjtA.t06-w0.5.mod
% Single Track Model: 1vjw.t06-w0.5.mod
% Single Track Model: 1ro2A.t06-w0.5.mod
% Single Track Model: 1lb3A.t06-w0.5.mod
% Single Track Model: 2abqA.t06-w0.5.mod
% Single Track Model: 1wa5C.t06-w0.5.mod
% Single Track Model: 1jjdA.t06-w0.5.mod
% Single Track Model: 1xwmA.t06-w0.5.mod
% Single Track Model: 1rkuA.t06-w0.5.mod
% Single Track Model: 1hxvA.t06-w0.5.mod
% Single Track Model: 2bzvA.t06-w0.5.mod
% Single Track Model: 1r1tA.t06-w0.5.mod
% Single Track Model: 2c5aA.t06-w0.5.mod
% Single Track Model: 1uteA.t06-w0.5.mod
% Single Track Model: 2bl9A.t06-w0.5.mod
% Single Track Model: 1vkiA.t06-w0.5.mod
% Single Track Model: 1jkgA.t06-w0.5.mod
% Single Track Model: 2gf9A.t06-w0.5.mod
% Single Track Model: 1im5A.t06-w0.5.mod
% Single Track Model: 2f4iA.t06-w0.5.mod
% Single Track Model: 1v72A.t06-w0.5.mod
% Single Track Model: 1xfkA.t06-w0.5.mod
% Single Track Model: 1oywA.t06-w0.5.mod
% Single Track Model: 1czfA.t06-w0.5.mod
% Single Track Model: 1s4cA.t06-w0.5.mod
% Single Track Model: 1f7lA.t06-w0.5.mod
% Single Track Model: 1d3yA.t06-w0.5.mod
% Single Track Model: 1iq8A.t06-w0.5.mod
% Single Track Model: 1u11A.t06-w0.5.mod
% Single Track Model: 1ey4A.t06-w0.5.mod
% Single Track Model: 1t8tA.t06-w0.5.mod
% Single Track Model: 1ep0A.t06-w0.5.mod
% Single Track Model: 1kdgA.t06-w0.5.mod
% Single Track Model: 1yp1A.t06-w0.5.mod
% Single Track Model: 1a76.t06-w0.5.mod
% Single Track Model: 1v18B.t06-w0.5.mod
% Single Track Model: 1ynbA.t06-w0.5.mod
% Single Track Model: 1q44A.t06-w0.5.mod
% Single Track Model: 2pia.t06-w0.5.mod
% Single Track Model: 1mh1.t06-w0.5.mod
% Single Track Model: 1xtqA.t06-w0.5.mod
% Single Track Model: 1c6wA.t06-w0.5.mod
% Single Track Model: 1utyA.t06-w0.5.mod
% Single Track Model: 1i9zA.t06-w0.5.mod
% Single Track Model: 1dabA.t06-w0.5.mod
% Single Track Model: 1ygtA.t06-w0.5.mod
% Single Track Model: 1h16A.t06-w0.5.mod
% Single Track Model: 1mz9A.t06-w0.5.mod
% Single Track Model: 1q90R.t06-w0.5.mod
% Single Track Model: 1w9iA.t06-w0.5.mod
% Single Track Model: 1vhtA.t06-w0.5.mod
% Single Track Model: 1cnnA.t06-w0.5.mod
% Single Track Model: 2bdeA.t06-w0.5.mod
% Single Track Model: 1nrzA.t06-w0.5.mod
% Single Track Model: 1hj8A.t06-w0.5.mod
% Single Track Model: 1zwwA.t06-w0.5.mod
% Single Track Model: 1nf1A.t06-w0.5.mod
% Single Track Model: 2a23A.t06-w0.5.mod
% Single Track Model: 1y791.t06-w0.5.mod
% Single Track Model: 1eteA.t06-w0.5.mod
% Single Track Model: 1h8dH.t06-w0.5.mod
% Single Track Model: 1qipA.t06-w0.5.mod
% Single Track Model: 1wa3A.t06-w0.5.mod
% Single Track Model: 1v54G.t06-w0.5.mod
% Single Track Model: 1qhvA.t06-w0.5.mod
% Single Track Model: 1im3D.t06-w0.5.mod
% Single Track Model: 2b18A.t06-w0.5.mod
% Single Track Model: 1tx4A.t06-w0.5.mod
% Single Track Model: 2gk9A.t06-w0.5.mod
% Single Track Model: 2cklA.t06-w0.5.mod
% Single Track Model: 1w2wA.t06-w0.5.mod
% Single Track Model: 1auoA.t06-w0.5.mod
% Single Track Model: 1hkhA.t06-w0.5.mod
% Single Track Model: 2cyeA.t06-w0.5.mod
% Single Track Model: 1aiw.t06-w0.5.mod
% Single Track Model: 1f06A.t06-w0.5.mod
% Single Track Model: 2cygA.t06-w0.5.mod
% Single Track Model: 1utg.t06-w0.5.mod
% Single Track Model: 1xrjA.t06-w0.5.mod
% Single Track Model: 1v8qA.t06-w0.5.mod
% Single Track Model: 2fuvA.t06-w0.5.mod
% Single Track Model: 1vqoS.t06-w0.5.mod
% Single Track Model: 1m4uA.t06-w0.5.mod
% Single Track Model: 1ecmA.t06-w0.5.mod
% Single Track Model: 1iycA.t06-w0.5.mod
% Single Track Model: 2coeA.t06-w0.5.mod
% Single Track Model: 2a74A.t06-w0.5.mod
% Single Track Model: 1hxxA.t06-w0.5.mod
% Single Track Model: 2bb6A.t06-w0.5.mod
% Single Track Model: 1jeyB.t06-w0.5.mod
% Single Track Model: 1svy.t06-w0.5.mod
% Single Track Model: 1ucsA.t06-w0.5.mod
% Single Track Model: 1eg2A.t06-w0.5.mod
% Single Track Model: 2czsA.t06-w0.5.mod
% Single Track Model: 1t2bA.t06-w0.5.mod
% Single Track Model: 2gdnA.t06-w0.5.mod
% Single Track Model: 1rx0A.t06-w0.5.mod
% Single Track Model: 2csoA.t06-w0.5.mod
% Single Track Model: 1rp3B.t06-w0.5.mod
% Single Track Model: 2ak3A.t06-w0.5.mod
% Single Track Model: 1u3dA.t06-w0.5.mod
% Single Track Model: 1geaA.t06-w0.5.mod
% Single Track Model: 2c6qA.t06-w0.5.mod
% Single Track Model: 2lisA.t06-w0.5.mod
% Single Track Model: 1nvmA.t06-w0.5.mod
% Single Track Model: 1xtoA.t06-w0.5.mod
% Single Track Model: 1bco.t06-w0.5.mod
% Single Track Model: 1ra0A.t06-w0.5.mod
% Single Track Model: 1xk5A.t06-w0.5.mod
% Single Track Model: 1zxkA.t06-w0.5.mod
% Single Track Model: 1egwA.t06-w0.5.mod
% Single Track Model: 2fbwA.t06-w0.5.mod
% Single Track Model: 1owxA.t06-w0.5.mod
% Single Track Model: 1dhkB.t06-w0.5.mod
% Single Track Model: 2gaeA.t06-w0.5.mod
% Single Track Model: 1h5uA.t06-w0.5.mod
% Single Track Model: 1zm0A.t06-w0.5.mod
% Single Track Model: 1q9rB.t06-w0.5.mod
% Single Track Model: 1bteA.t06-w0.5.mod
% Single Track Model: 1emxA.t06-w0.5.mod
% Single Track Model: 1l1lA.t06-w0.5.mod
% Single Track Model: 1epwA.t06-w0.5.mod
% Single Track Model: 3mra.t06-w0.5.mod
% Single Track Model: 2a11A.t06-w0.5.mod
% Single Track Model: 1kt6A.t06-w0.5.mod
% Single Track Model: 1tns.t06-w0.5.mod
% Single Track Model: 1j5jA.t06-w0.5.mod
% Single Track Model: 2ga9D.t06-w0.5.mod
% Single Track Model: 1xppA.t06-w0.5.mod
% Single Track Model: 1i40A.t06-w0.5.mod
% Single Track Model: 1io0A.t06-w0.5.mod
% Single Track Model: 1v84A.t06-w0.5.mod
% Single Track Model: 8abp.t06-w0.5.mod
% Single Track Model: 1qamA.t06-w0.5.mod
% Single Track Model: 1qmgA.t06-w0.5.mod
% Single Track Model: 1n1jA.t06-w0.5.mod
% Single Track Model: 1oltA.t06-w0.5.mod
% Single Track Model: 1jovA.t06-w0.5.mod
% Single Track Model: 2fsqA.t06-w0.5.mod
% Single Track Model: 1x3lA.t06-w0.5.mod
% Single Track Model: 1k8kD.t06-w0.5.mod
% Single Track Model: 1okcA.t06-w0.5.mod
% Single Track Model: 1w6kA.t06-w0.5.mod
% Single Track Model: 1jc4A.t06-w0.5.mod
% Single Track Model: 1pz5B.t06-w0.5.mod
% Single Track Model: 1vknA.t06-w0.5.mod
% Single Track Model: 1syyA.t06-w0.5.mod
% Single Track Model: 1x0rA.t06-w0.5.mod
% Single Track Model: 1pjhA.t06-w0.5.mod
% Single Track Model: 1ka9H.t06-w0.5.mod
% Single Track Model: 2g7gA.t06-w0.5.mod
% Single Track Model: 1gpeA.t06-w0.5.mod
% Single Track Model: 2cr5A.t06-w0.5.mod
% Single Track Model: 1u8xX.t06-w0.5.mod
% Single Track Model: 1ojjA.t06-w0.5.mod
% Single Track Model: 1wr2A.t06-w0.5.mod
% Single Track Model: 1gg4A.t06-w0.5.mod
% Single Track Model: 1oz2A.t06-w0.5.mod
% Single Track Model: 1s8nA.t06-w0.5.mod
% Single Track Model: 1df7A.t06-w0.5.mod
% Single Track Model: 1l7yA.t06-w0.5.mod
% Single Track Model: 1yf2A.t06-w0.5.mod
% Single Track Model: 1ufoA.t06-w0.5.mod
% Single Track Model: 1oc7A.t06-w0.5.mod
% Single Track Model: 1te0A.t06-w0.5.mod
% Single Track Model: 1wkrA.t06-w0.5.mod
% Single Track Model: 1ji7A.t06-w0.5.mod
% Single Track Model: 2h21A.t06-w0.5.mod
% Single Track Model: 1q4vA.t06-w0.5.mod
% Single Track Model: 1ywwA.t06-w0.5.mod
% Single Track Model: 2fhwA.t06-w0.5.mod
% Single Track Model: 1q74A.t06-w0.5.mod
% Single Track Model: 1v0jA.t06-w0.5.mod
% Single Track Model: 2a4dA.t06-w0.5.mod
% Single Track Model: 1mml.t06-w0.5.mod
% Single Track Model: 1y93A.t06-w0.5.mod
% Single Track Model: 1e8rA.t06-w0.5.mod
% Single Track Model: 1g4iA.t06-w0.5.mod
% Single Track Model: 2g1lA.t06-w0.5.mod
% Single Track Model: 1sfkA.t06-w0.5.mod
% Single Track Model: 1dnlA.t06-w0.5.mod
% Single Track Model: 1uvqC.t06-w0.5.mod
% Single Track Model: 1mcvI.t06-w0.5.mod
% Single Track Model: 1ay7B.t06-w0.5.mod
% Single Track Model: 2d1pB.t06-w0.5.mod
% Single Track Model: 1gky.t06-w0.5.mod
% Single Track Model: 1ia6A.t06-w0.5.mod
% Single Track Model: 2gf6A.t06-w0.5.mod
% Single Track Model: 1agg.t06-w0.5.mod
% Single Track Model: 1bn8A.t06-w0.5.mod
% Single Track Model: 1kid.t06-w0.5.mod
% Single Track Model: 1cg2A.t06-w0.5.mod
% Single Track Model: 1a78A.t06-w0.5.mod
% Single Track Model: 1bxoA.t06-w0.5.mod
% Single Track Model: 1zv1A.t06-w0.5.mod
% Single Track Model: 1rqtA.t06-w0.5.mod
% Single Track Model: 1zy4A.t06-w0.5.mod
% Single Track Model: 1r8gA.t06-w0.5.mod
% Single Track Model: 1ze3C.t06-w0.5.mod
% Single Track Model: 1yp2A.t06-w0.5.mod
% Single Track Model: 1ehiA.t06-w0.5.mod
% Single Track Model: 2bg9A.t06-w0.5.mod
% Single Track Model: 1zmdA.t06-w0.5.mod
% Single Track Model: 3ygsP.t06-w0.5.mod
% Single Track Model: 1b6g.t06-w0.5.mod
% Single Track Model: 1yk4A.t06-w0.5.mod
% Single Track Model: 1ux5A.t06-w0.5.mod
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% Single Track Model: 2f1lA.t06-w0.5.mod
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% Single Track Model: 1zk5A.t06-w0.5.mod
% Single Track Model: 1chuA.t06-w0.5.mod
% Single Track Model: 1xs1A.t06-w0.5.mod
% Single Track Model: 1qv1A.t06-w0.5.mod
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% Single Track Model: 1l8aA.t06-w0.5.mod
% Single Track Model: 1vpmA.t06-w0.5.mod
% Single Track Model: 1ex0A.t06-w0.5.mod
% Single Track Model: 1uheB.t06-w0.5.mod
% Single Track Model: 1ualA.t06-w0.5.mod
% Single Track Model: 1iw4A.t06-w0.5.mod
% Single Track Model: 2d1eA.t06-w0.5.mod
% Single Track Model: 1k3sA.t06-w0.5.mod
% Single Track Model: 1iu8A.t06-w0.5.mod
% Single Track Model: 1jh6A.t06-w0.5.mod
% Single Track Model: 1g7sA.t06-w0.5.mod
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% Single Track Model: 1jl0A.t06-w0.5.mod
% Single Track Model: 1gtfA.t06-w0.5.mod
% Single Track Model: 2cy5A.t06-w0.5.mod
% Single Track Model: 1xpkC.t06-w0.5.mod
% Single Track Model: 1z4rA.t06-w0.5.mod
% Single Track Model: 1nd9A.t06-w0.5.mod
% Single Track Model: 2fm9A.t06-w0.5.mod
% Single Track Model: 1xgkA.t06-w0.5.mod
% Single Track Model: 1q8dA.t06-w0.5.mod
% Single Track Model: 1uqvA.t06-w0.5.mod
% Single Track Model: 1wfbA.t06-w0.5.mod
% Single Track Model: 1dbxA.t06-w0.5.mod
% Single Track Model: 1hjsA.t06-w0.5.mod
% Single Track Model: 2bt6A.t06-w0.5.mod
% Single Track Model: 1jubA.t06-w0.5.mod
% Single Track Model: 1b43A.t06-w0.5.mod
% Single Track Model: 2bhvA.t06-w0.5.mod
% Single Track Model: 1owtA.t06-w0.5.mod
% Single Track Model: 1q1vA.t06-w0.5.mod
% Single Track Model: 2g6tA.t06-w0.5.mod
% Single Track Model: 1s1pA.t06-w0.5.mod
% Single Track Model: 1r29A.t06-w0.5.mod
% Single Track Model: 1lyqA.t06-w0.5.mod
% Single Track Model: 1ng2A.t06-w0.5.mod
% Single Track Model: 1ohuA.t06-w0.5.mod
% Single Track Model: 1rwjA.t06-w0.5.mod
% Single Track Model: 1m45B.t06-w0.5.mod
% Single Track Model: 2cruA.t06-w0.5.mod
% Single Track Model: 1spgA.t06-w0.5.mod
% Single Track Model: 2bpa1.t06-w0.5.mod
% Single Track Model: 2bemA.t06-w0.5.mod
% Single Track Model: 1eyoA.t06-w0.5.mod
% Single Track Model: 1xe7A.t06-w0.5.mod
% Single Track Model: 1g6uA.t06-w0.5.mod
% Single Track Model: 1iynA.t06-w0.5.mod
% Single Track Model: 1wv8A.t06-w0.5.mod
% Single Track Model: 1wo7A.t06-w0.5.mod
% Single Track Model: 1x9iA.t06-w0.5.mod
% Single Track Model: 1lu4A.t06-w0.5.mod
% Single Track Model: 2flsA.t06-w0.5.mod
% Single Track Model: 1nnwA.t06-w0.5.mod
% Single Track Model: 1w0uA.t06-w0.5.mod
% Single Track Model: 1jae.t06-w0.5.mod
% Single Track Model: 1s5uA.t06-w0.5.mod
% Single Track Model: 1bh9A.t06-w0.5.mod
% Single Track Model: 1i8kA.t06-w0.5.mod
% Single Track Model: 2bl0A.t06-w0.5.mod
% Single Track Model: 1jv1A.t06-w0.5.mod
% Single Track Model: 1o1yA.t06-w0.5.mod
% Single Track Model: 1twiA.t06-w0.5.mod
% Single Track Model: 1ss4A.t06-w0.5.mod
% Single Track Model: 1hyp.t06-w0.5.mod
% Single Track Model: 1y51A.t06-w0.5.mod
% Single Track Model: 1izcA.t06-w0.5.mod
% Single Track Model: 1j3mA.t06-w0.5.mod
% Single Track Model: 1n1tA.t06-w0.5.mod
% Single Track Model: 1arb.t06-w0.5.mod
% Single Track Model: 1h1yA.t06-w0.5.mod
% Single Track Model: 2cosA.t06-w0.5.mod
% Single Track Model: 1jyaA.t06-w0.5.mod
% Single Track Model: 2nr1.t06-w0.5.mod
% Single Track Model: 1pyoA.t06-w0.5.mod
% Single Track Model: 1ydyA.t06-w0.5.mod
% Single Track Model: 1r1hA.t06-w0.5.mod
% Single Track Model: 1go3E.t06-w0.5.mod
% Single Track Model: 1qjcA.t06-w0.5.mod
% Single Track Model: 1x1tA.t06-w0.5.mod
% Single Track Model: 2bikB.t06-w0.5.mod
% Single Track Model: 1qlwA.t06-w0.5.mod
% Single Track Model: 1q2zA.t06-w0.5.mod
% Single Track Model: 1cbs.t06-w0.5.mod
% Single Track Model: 1u6eA.t06-w0.5.mod
% Single Track Model: 1o7nA.t06-w0.5.mod
% Single Track Model: 1bx7.t06-w0.5.mod
% Single Track Model: 1reqA.t06-w0.5.mod
% Single Track Model: 1um0A.t06-w0.5.mod
% Single Track Model: 256bA.t06-w0.5.mod
% Single Track Model: 1zpyA.t06-w0.5.mod
% Single Track Model: 1wxxA.t06-w0.5.mod
% Single Track Model: 1edg.t06-w0.5.mod
% Single Track Model: 1cxc.t06-w0.5.mod
% Single Track Model: 1i8fA.t06-w0.5.mod
% Single Track Model: 1aisA.t06-w0.5.mod
% Single Track Model: 1d8bA.t06-w0.5.mod
% Single Track Model: 1jflA.t06-w0.5.mod
% Single Track Model: 1tf1A.t06-w0.5.mod
% Single Track Model: 2a1xA.t06-w0.5.mod
% Single Track Model: 1t56A.t06-w0.5.mod
% Single Track Model: 1qk7A.t06-w0.5.mod
% Single Track Model: 1lmiA.t06-w0.5.mod
% Single Track Model: 1ukcA.t06-w0.5.mod
% Single Track Model: 1fyeA.t06-w0.5.mod
% Single Track Model: 1bu6O.t06-w0.5.mod
% Single Track Model: 1lucB.t06-w0.5.mod
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% Single Track Model: 2c1lA.t06-w0.5.mod
% Single Track Model: 1b5pA.t06-w0.5.mod
% Single Track Model: 2blfB.t06-w0.5.mod
% Single Track Model: 1zjqA.t06-w0.5.mod
% Single Track Model: 1zd3A.t06-w0.5.mod
% Single Track Model: 1no5A.t06-w0.5.mod
% Single Track Model: 1gjnA.t06-w0.5.mod
% Single Track Model: 1gqeA.t06-w0.5.mod
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% Single Track Model: 1iakA.t06-w0.5.mod
% Single Track Model: 1ug3A.t06-w0.5.mod
% Single Track Model: 1e8gA.t06-w0.5.mod
% Single Track Model: 1d2fA.t06-w0.5.mod
% Single Track Model: 1gnxA.t06-w0.5.mod
% Single Track Model: 1qe5A.t06-w0.5.mod
% Single Track Model: 2agmA.t06-w0.5.mod
% Single Track Model: 1bquA.t06-w0.5.mod
% Single Track Model: 2djyB.t06-w0.5.mod
% Single Track Model: 1a70.t06-w0.5.mod
% Single Track Model: 1h05A.t06-w0.5.mod
% Single Track Model: 1icpA.t06-w0.5.mod
% Single Track Model: 1yirA.t06-w0.5.mod
% Single Track Model: 2f40A.t06-w0.5.mod
% Single Track Model: 1tqnA.t06-w0.5.mod
% Single Track Model: 1ejgA.t06-w0.5.mod
% Single Track Model: 1lkqA.t06-w0.5.mod
% Single Track Model: 1smxA.t06-w0.5.mod
% Single Track Model: 1e5mA.t06-w0.5.mod
% Single Track Model: 1io1A.t06-w0.5.mod
% Single Track Model: 1nr4A.t06-w0.5.mod
% Single Track Model: 1mvuB.t06-w0.5.mod
% Single Track Model: 1rd5A.t06-w0.5.mod
% Single Track Model: 1ppjH.t06-w0.5.mod
% Single Track Model: 1dm9A.t06-w0.5.mod
% Single Track Model: 1jer.t06-w0.5.mod
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% Single Track Model: 1l0lK.t06-w0.5.mod
% Single Track Model: 1cfr.t06-w0.5.mod
% Single Track Model: 1to6A.t06-w0.5.mod
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% Single Track Model: 2f4nA.t06-w0.5.mod
% Single Track Model: 1tiiC.t06-w0.5.mod
% Single Track Model: 1cy5A.t06-w0.5.mod
% Single Track Model: 1g6sA.t06-w0.5.mod
% Single Track Model: 1jdw.t06-w0.5.mod
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% Single Track Model: 1ryaA.t06-w0.5.mod
% Single Track Model: 1mp9A.t06-w0.5.mod
% Single Track Model: 1ut9A.t06-w0.5.mod
% Single Track Model: 1euhA.t06-w0.5.mod
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% Single Track Model: 1ul4A.t06-w0.5.mod
% Single Track Model: 1yz1A.t06-w0.5.mod
% Single Track Model: 1kn6A.t06-w0.5.mod
% Single Track Model: 1k3iA.t06-w0.5.mod
% Single Track Model: 1weuA.t06-w0.5.mod
% Single Track Model: 2cqsA.t06-w0.5.mod
% Single Track Model: 1qddA.t06-w0.5.mod
% Single Track Model: 2cwyA.t06-w0.5.mod
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% Single Track Model: 1kn1A.t06-w0.5.mod
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% Single Track Model: 1xlqA.t06-w0.5.mod
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% Single Track Model: 1i4jA.t06-w0.5.mod
% Single Track Model: 1ldfA.t06-w0.5.mod
% Single Track Model: 1rowA.t06-w0.5.mod
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% Single Track Model: 1x4rA.t06-w0.5.mod
% Single Track Model: 2f71A.t06-w0.5.mod
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% Single Track Model: 1wocA.t06-w0.5.mod
% Single Track Model: 1gefA.t06-w0.5.mod
% Single Track Model: 1wuiL.t06-w0.5.mod
% Single Track Model: 1rlyA.t06-w0.5.mod
% Single Track Model: 1jb7A.t06-w0.5.mod
% Single Track Model: 1v0dA.t06-w0.5.mod
% Single Track Model: 1p0zA.t06-w0.5.mod
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% Single Track Model: 1q68A.t06-w0.5.mod
% Single Track Model: 1guqA.t06-w0.5.mod
% Single Track Model: 1zjjA.t06-w0.5.mod
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grep -v '^[#]' < T0334.t06-template-lib.dist-rdb \
| /projects/compbio/experiments/protein-predict/yeast/scripts/shorten_mod_names \
| /projects/compbio/bin/row SEQID eq T0334 \
| /projects/compbio/bin/sorttbl EVALUE \
> T0334.t06-template-lib-scores.rdb
rm T0334.t06-template-lib.dist-rdb
/projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html T0334.t06.template-lib-scores < T0334.t06-template-lib-scores.rdb > T0334.t06-template-lib-scores.html
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 3.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 3.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 3.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 3.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 3.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 3.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 3.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 4.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 4.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 4.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 4.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 4.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 4.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 4.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 5.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 5.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 5.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 5.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 5.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 5.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 5.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 6.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 6.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 6.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 6.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 6.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 6.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 6.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 7.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 7.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 7.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 7.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 7.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 7.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 7.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 8.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 8.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 8.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 8.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 8.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 8.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 8.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 9.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 9.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 9.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 9.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 9.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 9.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 9.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 10.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 10.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 10.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 10.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 10.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 10.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 10.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 11.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 11.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 11.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 11.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 11.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 11.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 11.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 12.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 12.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 12.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 12.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 12.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 12.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 12.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 13.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 13.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 13.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 13.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 13.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 13.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 13.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 14.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 14.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 14.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 14.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 14.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 14.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 14.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 15.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 15.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 15.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 15.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 15.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 15.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 15.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 16.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 16.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 16.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 16.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 16.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 16.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 16.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 17.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 17.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 17.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 17.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 17.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 17.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 17.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 18.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 18.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 18.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 18.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 18.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 18.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 18.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 19.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 19.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 19.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 19.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 19.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 19.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 19.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 20.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 20.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 20.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 20.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 20.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 20.
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Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 22.
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Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 23.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 23.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 23.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 23.
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Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 24.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 24.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 24.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 24.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 24.
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Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 25.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 25.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 25.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 25.
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Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 26.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 26.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 26.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 26.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 26.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 26.
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Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 27.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 27.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 27.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 27.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 27.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 27.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 28.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 28.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 28.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 28.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 28.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 28.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 28.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 29.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 29.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 29.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 29.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 29.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 29.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 29.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 30.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 30.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 30.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 30.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 30.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 30.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 30.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 31.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 31.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 31.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 31.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 31.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 31.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 31.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 32.
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Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 32.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 32.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 32.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 32.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 32.
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Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 33.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 33.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 33.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 33.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 33.
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Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 34.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 34.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 34.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 34.
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Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 35.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 35.
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Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 36.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 36.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 36.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 36.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 36.
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Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 37.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 37.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 37.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 37.
Use of uninitialized value in numeric le (<=) at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 62, line 38.
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Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 38.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66, line 38.
Use of uninitialized value in array element at /projects/compbio/experiments/protein-predict/casp7/scripts/oneway_hits_rdb2html line 66,