CreatePredAlphaCost pred_alpha2k alpha11 T0334.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0334.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0334.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 25 dry6.5 35 dry8 20 dry12 10 \ phobic_fit 2 \ sidechain 7 \ n_ca_c 10 bad_peptide 10 \ bystroff 5 \ soft_clashes 80 backbone_clashes 2 \ break 240 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 10 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1 # from T0334.dssp-ehl2.constraints StrandConstraint K7 V11 0.7227 HelixConstraint T15 L28 0.6859 StrandConstraint I34 Q38 0.6137 HelixConstraint P53 F62 0.7002 HelixConstraint E67 E73 0.8486 HelixConstraint F111 Q119 0.6232 HelixConstraint W126 R129 0.6234 HelixConstraint F139 I149 0.6176 HelixConstraint A173 E186 0.8415 StrandConstraint V190 V193 0.7138 StrandConstraint D195 R202 0.6013 StrandConstraint I208 T213 0.766 StrandConstraint V218 D220 0.8059 StrandConstraint D222 D226 0.641 HelixConstraint F230 A238 0.6174 StrandConstraint A255 T258 0.6888 StrandConstraint T283 I286 0.7295 StrandConstraint G295 Y298 0.6019 HelixConstraint E305 W316 0.6489 StrandConstraint C343 I346 0.7229 HelixConstraint E357 H374 0.6149 HelixConstraint P382 Y408 0.6028 HelixConstraint P416 A420 0.7315 HelixConstraint D428 A439 0.6961 HelixConstraint N457 N464 0.6429 HelixConstraint P482 V502 0.6813 HelixConstraint A505 L513 0.6052 HelixConstraint S519 Q527 0.6154 #sheet constraints from conformation 0 T0334-2aqjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m:2aqjA SheetConstraint D6 G12 A32 Q38 hbond I8 10 SheetConstraint K7 I10 D222 V225 hbond L9 10 SheetConstraint I34 A39 G189 E194 hbond L36 10 SheetConstraint F84 N86 E99 A97 hbond F84 10 SheetConstraint K83 I85 S274 I276 hbond I85 10 SheetConstraint G103 D105 S110 Y108 hbond D105 10 SheetConstraint E198 R202 T213 E209 hbond H199 10 SheetConstraint S210 T213 D220 R217 hbond V211 10 SheetConstraint F224 D226 C343 S345 hbond F224 10 SheetConstraint P242 M246 R336 V332 hbond L244 10 SheetConstraint V256 A257 R327 N326 hbond A257 10 SheetConstraint T273 M278 I286 G281 hbond S274 10 SheetConstraint S280 I286 S299 G293 hbond W282 10 SheetConstraint G333 N335 F352 S350 hbond G333 10 SheetConstraint A338 V340 S345 C343 hbond V340 10