Best Alignments for T0334

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2aqjA/T0334-2aqjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2aqjA/T0334-2aqjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.7864e-464.29e-233
1ebdA/T0334-1ebdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ebdA/T0334-1ebdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3700e-443.79e-77 1lvl c.3.1.5
c.3.1.5
d.87.1.1
1fohA/T0334-1fohA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fohA/T0334-1fohA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0702e-291.89e-126 1fohA c.3.1.2
c.47.1.10
d.16.1.2
1cj3A/T0334-1cj3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1cj3A/T0334-1cj3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4400e-277.33e-123 1pbe c.3.1.2
d.16.1.2
1ng4A/T0334-1ng4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ng4A/T0334-1ng4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.5394e-272.28e-127 c.3.1.2
d.16.1.3
1ryiA/T0334-1ryiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ryiA/T0334-1ryiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5845e-268.32e-126
1pj5A/T0334-1pj5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pj5A/T0334-1pj5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.9104e-261.35e-120 b.44.2.1
c.3.1.2
d.16.1.5
d.250.1.1
1ykjA/T0334-1ykjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ykjA/T0334-1ykjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1898e-222.82e-128
1y56B/T0334-1y56B-t04-global-adpstyle1.a2m 1y56B/T0334-1y56B-t04-global-adpstyle1.al 4.3042e-224.80e-78
1zmdA/T0334-1zmdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zmdA/T0334-1zmdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.2773e-225.56e-78

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001