make[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0333' mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0333.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.predburial.rdb sed -e s/XXX0000/T0333/ -e s/START_COL/1/ \ -e s/COSTFCN/predburial/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e s/REAL_PDB// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /cse/grads/jarchie/projects/cvs/karplus/undertaker/undertaker # command:# Seed set to 1172835078 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.38803 sec, elapsed time= 6.44717 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.46502 sec, elapsed time= 6.55347 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0333 numbered 1 through 376 Created new target T0333 from T0333.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:Error: ReadConformPDBidsNo chains found for ID set: # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:# reading script from file predburial.costfcn # Read 5 alphabets from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # created predicted BurialPredCostFcn pred_burial2k # created predicted BurialPredCostFcn pred_burial2k_simple # created predicted BurialPredCostFcn pred_burial04 # created predicted BurialPredCostFcn pred_burial04_simple # created predicted BurialPredCostFcn pred_burial06 # created predicted BurialPredCostFcn pred_burial06_simple # reading predictions from T0333.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0333.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0333.t06.alpha.rdb # created predicted alpha cost function pred_alpha06 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 5 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 5 * pred_burial2k_simple(9.65) + 5 * pred_burial2k(9.65) + 5 * pred_burial04_simple(9.65) + 5 * pred_burial04(9.65) + 5 * pred_burial06_simple(9.65) + 5 * pred_burial06(9.65) + 2 * phobic_fit + 10 * n_ca_c + 20 * bad_peptide + 5 * sidechain + 8 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 50 * break + 3 * pred_alpha2k + 4 * pred_alpha04 + 5 * pred_alpha06 + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair + 1 * missing_atoms ) # command:CPU_time= 9.52855 sec, elapsed time= 10.1558 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -5.31915 # GDT_score(maxd=8,maxw=2.9)= -4.6091 # GDT_score(maxd=8,maxw=3.2)= -4.42633 # GDT_score(maxd=8,maxw=3.5)= -4.27489 # GDT_score(maxd=10,maxw=3.8)= -5.15469 # GDT_score(maxd=10,maxw=4)= -5.02994 # GDT_score(maxd=10,maxw=4.2)= -4.91042 # GDT_score(maxd=12,maxw=4.3)= -5.92452 # GDT_score(maxd=12,maxw=4.5)= -5.77103 # GDT_score(maxd=12,maxw=4.7)= -5.61931 # GDT_score(maxd=14,maxw=5.2)= -6.19706 # GDT_score(maxd=14,maxw=5.5)= -5.96059 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1288554736.pdb -s /var/tmp/to_scwrl_1288554736.seq -o /var/tmp/from_scwrl_1288554736.pdb > /var/tmp/scwrl_1288554736.log Error: can't open any of /var/tmp/from_scwrl_1288554736.pdb or /var/tmp/from_scwrl_1288554736_b.pdb or /var/tmp/from_scwrl_1288554736_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -5.45213 # GDT_score(maxd=8,maxw=2.9)= -4.82986 # GDT_score(maxd=8,maxw=3.2)= -4.62894 # GDT_score(maxd=8,maxw=3.5)= -4.46014 # GDT_score(maxd=10,maxw=3.8)= -5.3234 # GDT_score(maxd=10,maxw=4)= -5.19021 # GDT_score(maxd=10,maxw=4.2)= -5.0697 # GDT_score(maxd=12,maxw=4.3)= -6.04506 # GDT_score(maxd=12,maxw=4.5)= -5.89459 # GDT_score(maxd=12,maxw=4.7)= -5.75693 # GDT_score(maxd=14,maxw=5.2)= -6.35008 # GDT_score(maxd=14,maxw=5.5)= -6.11599 # command:# request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1765959026.pdb -s /var/tmp/to_scwrl_1765959026.seq -o /var/tmp/from_scwrl_1765959026.pdb > /var/tmp/scwrl_1765959026.log Error: can't open any of /var/tmp/from_scwrl_1765959026.pdb or /var/tmp/from_scwrl_1765959026_b.pdb or /var/tmp/from_scwrl_1765959026_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -5.38564 # GDT_score(maxd=8,maxw=2.9)= -4.45046 # GDT_score(maxd=8,maxw=3.2)= -4.29305 # GDT_score(maxd=8,maxw=3.5)= -4.15304 # GDT_score(maxd=10,maxw=3.8)= -5.0561 # GDT_score(maxd=10,maxw=4)= -4.93627 # GDT_score(maxd=10,maxw=4.2)= -4.82786 # GDT_score(maxd=12,maxw=4.3)= -5.8204 # GDT_score(maxd=12,maxw=4.5)= -5.67988 # GDT_score(maxd=12,maxw=4.7)= -5.54003 # GDT_score(maxd=14,maxw=5.2)= -6.14168 # GDT_score(maxd=14,maxw=5.5)= -5.93356 # command:# request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1066728544.pdb -s /var/tmp/to_scwrl_1066728544.seq -o /var/tmp/from_scwrl_1066728544.pdb > /var/tmp/scwrl_1066728544.log Error: can't open any of /var/tmp/from_scwrl_1066728544.pdb or /var/tmp/from_scwrl_1066728544_b.pdb or /var/tmp/from_scwrl_1066728544_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.869681 # GDT_score = -5.11968 # GDT_score(maxd=8,maxw=2.9)= -4.21891 # GDT_score(maxd=8,maxw=3.2)= -4.09766 # GDT_score(maxd=8,maxw=3.5)= -3.99719 # GDT_score(maxd=10,maxw=3.8)= -4.72051 # GDT_score(maxd=10,maxw=4)= -4.63076 # GDT_score(maxd=10,maxw=4.2)= -4.54956 # GDT_score(maxd=12,maxw=4.3)= -5.34809 # GDT_score(maxd=12,maxw=4.5)= -5.24042 # GDT_score(maxd=12,maxw=4.7)= -5.14192 # GDT_score(maxd=14,maxw=5.2)= -5.64816 # GDT_score(maxd=14,maxw=5.5)= -5.45922 # command:# request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1810380592.pdb -s /var/tmp/to_scwrl_1810380592.seq -o /var/tmp/from_scwrl_1810380592.pdb > /var/tmp/scwrl_1810380592.log Error: can't open any of /var/tmp/from_scwrl_1810380592.pdb or /var/tmp/from_scwrl_1810380592_b.pdb or /var/tmp/from_scwrl_1810380592_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.888298 # GDT_score = -5.38564 # GDT_score(maxd=8,maxw=2.9)= -4.52322 # GDT_score(maxd=8,maxw=3.2)= -4.37344 # GDT_score(maxd=8,maxw=3.5)= -4.23952 # GDT_score(maxd=10,maxw=3.8)= -5.0991 # GDT_score(maxd=10,maxw=4)= -4.9754 # GDT_score(maxd=10,maxw=4.2)= -4.85246 # GDT_score(maxd=12,maxw=4.3)= -5.79718 # GDT_score(maxd=12,maxw=4.5)= -5.64591 # GDT_score(maxd=12,maxw=4.7)= -5.50751 # GDT_score(maxd=14,maxw=5.2)= -6.0554 # GDT_score(maxd=14,maxw=5.5)= -5.82987 # command:# request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_321339300.pdb -s /var/tmp/to_scwrl_321339300.seq -o /var/tmp/from_scwrl_321339300.pdb > /var/tmp/scwrl_321339300.log Error: can't open any of /var/tmp/from_scwrl_321339300.pdb or /var/tmp/from_scwrl_321339300_b.pdb or /var/tmp/from_scwrl_321339300_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0333.try1-opt2.pdb looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -5.45213 # GDT_score(maxd=8,maxw=2.9)= -4.44939 # GDT_score(maxd=8,maxw=3.2)= -4.29198 # GDT_score(maxd=8,maxw=3.5)= -4.15206 # GDT_score(maxd=10,maxw=3.8)= -5.05712 # GDT_score(maxd=10,maxw=4)= -4.93724 # GDT_score(maxd=10,maxw=4.2)= -4.82878 # GDT_score(maxd=12,maxw=4.3)= -5.82304 # GDT_score(maxd=12,maxw=4.5)= -5.68234 # GDT_score(maxd=12,maxw=4.7)= -5.5424 # GDT_score(maxd=14,maxw=5.2)= -6.14343 # GDT_score(maxd=14,maxw=5.5)= -5.93524 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0333.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.896277 # GDT_score = -5.25266 # GDT_score(maxd=8,maxw=2.9)= -4.37897 # GDT_score(maxd=8,maxw=3.2)= -4.24271 # GDT_score(maxd=8,maxw=3.5)= -4.12981 # GDT_score(maxd=10,maxw=3.8)= -4.88116 # GDT_score(maxd=10,maxw=4)= -4.78338 # GDT_score(maxd=10,maxw=4.2)= -4.69491 # GDT_score(maxd=12,maxw=4.3)= -5.54592 # GDT_score(maxd=12,maxw=4.5)= -5.42946 # GDT_score(maxd=12,maxw=4.7)= -5.32291 # GDT_score(maxd=14,maxw=5.2)= -5.85059 # GDT_score(maxd=14,maxw=5.5)= -5.65049 # command:# ReadConformPDB reading from PDB file T0333.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.896277 # GDT_score = -5.58511 # GDT_score(maxd=8,maxw=2.9)= -4.68244 # GDT_score(maxd=8,maxw=3.2)= -4.51773 # GDT_score(maxd=8,maxw=3.5)= -4.37147 # GDT_score(maxd=10,maxw=3.8)= -5.22412 # GDT_score(maxd=10,maxw=4)= -5.09292 # GDT_score(maxd=10,maxw=4.2)= -4.96438 # GDT_score(maxd=12,maxw=4.3)= -5.91975 # GDT_score(maxd=12,maxw=4.5)= -5.76303 # GDT_score(maxd=12,maxw=4.7)= -5.61965 # GDT_score(maxd=14,maxw=5.2)= -6.16323 # GDT_score(maxd=14,maxw=5.5)= -5.93181 # command:# ReadConformPDB reading from PDB file T0333.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0333.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0333.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0333.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 341 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 341 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 322 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try3-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try4-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 342 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try5-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 342 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 347 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 347 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try6-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0333.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_555090280.pdb -s /var/tmp/to_scwrl_555090280.seq -o /var/tmp/from_scwrl_555090280.pdb > /var/tmp/scwrl_555090280.log Error: can't open any of /var/tmp/from_scwrl_555090280.pdb or /var/tmp/from_scwrl_555090280_b.pdb or /var/tmp/from_scwrl_555090280_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1909222275.pdb -s /var/tmp/to_scwrl_1909222275.seq -o /var/tmp/from_scwrl_1909222275.pdb > /var/tmp/scwrl_1909222275.log Error: can't open any of /var/tmp/from_scwrl_1909222275.pdb or /var/tmp/from_scwrl_1909222275_b.pdb or /var/tmp/from_scwrl_1909222275_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # Found a chain break before 354 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_86688440.pdb -s /var/tmp/to_scwrl_86688440.seq -o /var/tmp/from_scwrl_86688440.pdb > /var/tmp/scwrl_86688440.log Error: can't open any of /var/tmp/from_scwrl_86688440.pdb or /var/tmp/from_scwrl_86688440_b.pdb or /var/tmp/from_scwrl_86688440_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_967418709.pdb -s /var/tmp/to_scwrl_967418709.seq -o /var/tmp/from_scwrl_967418709.pdb > /var/tmp/scwrl_967418709.log Error: can't open any of /var/tmp/from_scwrl_967418709.pdb or /var/tmp/from_scwrl_967418709_b.pdb or /var/tmp/from_scwrl_967418709_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_390362782.pdb -s /var/tmp/to_scwrl_390362782.seq -o /var/tmp/from_scwrl_390362782.pdb > /var/tmp/scwrl_390362782.log Error: can't open any of /var/tmp/from_scwrl_390362782.pdb or /var/tmp/from_scwrl_390362782_b.pdb or /var/tmp/from_scwrl_390362782_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_140815065.pdb -s /var/tmp/to_scwrl_140815065.seq -o /var/tmp/from_scwrl_140815065.pdb > /var/tmp/scwrl_140815065.log Error: can't open any of /var/tmp/from_scwrl_140815065.pdb or /var/tmp/from_scwrl_140815065_b.pdb or /var/tmp/from_scwrl_140815065_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_22433850.pdb -s /var/tmp/to_scwrl_22433850.seq -o /var/tmp/from_scwrl_22433850.pdb > /var/tmp/scwrl_22433850.log Error: can't open any of /var/tmp/from_scwrl_22433850.pdb or /var/tmp/from_scwrl_22433850_b.pdb or /var/tmp/from_scwrl_22433850_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1759974904.pdb -s /var/tmp/to_scwrl_1759974904.seq -o /var/tmp/from_scwrl_1759974904.pdb > /var/tmp/scwrl_1759974904.log Error: can't open any of /var/tmp/from_scwrl_1759974904.pdb or /var/tmp/from_scwrl_1759974904_b.pdb or /var/tmp/from_scwrl_1759974904_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_603015461.pdb -s /var/tmp/to_scwrl_603015461.seq -o /var/tmp/from_scwrl_603015461.pdb > /var/tmp/scwrl_603015461.log Error: can't open any of /var/tmp/from_scwrl_603015461.pdb or /var/tmp/from_scwrl_603015461_b.pdb or /var/tmp/from_scwrl_603015461_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_334840846.pdb -s /var/tmp/to_scwrl_334840846.seq -o /var/tmp/from_scwrl_334840846.pdb > /var/tmp/scwrl_334840846.log Error: can't open any of /var/tmp/from_scwrl_334840846.pdb or /var/tmp/from_scwrl_334840846_b.pdb or /var/tmp/from_scwrl_334840846_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_724811453.pdb -s /var/tmp/to_scwrl_724811453.seq -o /var/tmp/from_scwrl_724811453.pdb > /var/tmp/scwrl_724811453.log Error: can't open any of /var/tmp/from_scwrl_724811453.pdb or /var/tmp/from_scwrl_724811453_b.pdb or /var/tmp/from_scwrl_724811453_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # Found a chain break before 363 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2084437949.pdb -s /var/tmp/to_scwrl_2084437949.seq -o /var/tmp/from_scwrl_2084437949.pdb > /var/tmp/scwrl_2084437949.log Error: can't open any of /var/tmp/from_scwrl_2084437949.pdb or /var/tmp/from_scwrl_2084437949_b.pdb or /var/tmp/from_scwrl_2084437949_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_200307686.pdb -s /var/tmp/to_scwrl_200307686.seq -o /var/tmp/from_scwrl_200307686.pdb > /var/tmp/scwrl_200307686.log Error: can't open any of /var/tmp/from_scwrl_200307686.pdb or /var/tmp/from_scwrl_200307686_b.pdb or /var/tmp/from_scwrl_200307686_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1841144479.pdb -s /var/tmp/to_scwrl_1841144479.seq -o /var/tmp/from_scwrl_1841144479.pdb > /var/tmp/scwrl_1841144479.log Error: can't open any of /var/tmp/from_scwrl_1841144479.pdb or /var/tmp/from_scwrl_1841144479_b.pdb or /var/tmp/from_scwrl_1841144479_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1664514653.pdb -s /var/tmp/to_scwrl_1664514653.seq -o /var/tmp/from_scwrl_1664514653.pdb > /var/tmp/scwrl_1664514653.log Error: can't open any of /var/tmp/from_scwrl_1664514653.pdb or /var/tmp/from_scwrl_1664514653_b.pdb or /var/tmp/from_scwrl_1664514653_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_709559771.pdb -s /var/tmp/to_scwrl_709559771.seq -o /var/tmp/from_scwrl_709559771.pdb > /var/tmp/scwrl_709559771.log Error: can't open any of /var/tmp/from_scwrl_709559771.pdb or /var/tmp/from_scwrl_709559771_b.pdb or /var/tmp/from_scwrl_709559771_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1505591714.pdb -s /var/tmp/to_scwrl_1505591714.seq -o /var/tmp/from_scwrl_1505591714.pdb > /var/tmp/scwrl_1505591714.log Error: can't open any of /var/tmp/from_scwrl_1505591714.pdb or /var/tmp/from_scwrl_1505591714_b.pdb or /var/tmp/from_scwrl_1505591714_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 327 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1315064416.pdb -s /var/tmp/to_scwrl_1315064416.seq -o /var/tmp/from_scwrl_1315064416.pdb > /var/tmp/scwrl_1315064416.log Error: can't open any of /var/tmp/from_scwrl_1315064416.pdb or /var/tmp/from_scwrl_1315064416_b.pdb or /var/tmp/from_scwrl_1315064416_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 331 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_553975056.pdb -s /var/tmp/to_scwrl_553975056.seq -o /var/tmp/from_scwrl_553975056.pdb > /var/tmp/scwrl_553975056.log Error: can't open any of /var/tmp/from_scwrl_553975056.pdb or /var/tmp/from_scwrl_553975056_b.pdb or /var/tmp/from_scwrl_553975056_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 343 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_51785497.pdb -s /var/tmp/to_scwrl_51785497.seq -o /var/tmp/from_scwrl_51785497.pdb > /var/tmp/scwrl_51785497.log Error: can't open any of /var/tmp/from_scwrl_51785497.pdb or /var/tmp/from_scwrl_51785497_b.pdb or /var/tmp/from_scwrl_51785497_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1297666416.pdb -s /var/tmp/to_scwrl_1297666416.seq -o /var/tmp/from_scwrl_1297666416.pdb > /var/tmp/scwrl_1297666416.log Error: can't open any of /var/tmp/from_scwrl_1297666416.pdb or /var/tmp/from_scwrl_1297666416_b.pdb or /var/tmp/from_scwrl_1297666416_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 330 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1009934565.pdb -s /var/tmp/to_scwrl_1009934565.seq -o /var/tmp/from_scwrl_1009934565.pdb > /var/tmp/scwrl_1009934565.log Error: can't open any of /var/tmp/from_scwrl_1009934565.pdb or /var/tmp/from_scwrl_1009934565_b.pdb or /var/tmp/from_scwrl_1009934565_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 339 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_167769634.pdb -s /var/tmp/to_scwrl_167769634.seq -o /var/tmp/from_scwrl_167769634.pdb > /var/tmp/scwrl_167769634.log Error: can't open any of /var/tmp/from_scwrl_167769634.pdb or /var/tmp/from_scwrl_167769634_b.pdb or /var/tmp/from_scwrl_167769634_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 344 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_742713207.pdb -s /var/tmp/to_scwrl_742713207.seq -o /var/tmp/from_scwrl_742713207.pdb > /var/tmp/scwrl_742713207.log Error: can't open any of /var/tmp/from_scwrl_742713207.pdb or /var/tmp/from_scwrl_742713207_b.pdb or /var/tmp/from_scwrl_742713207_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1419307611.pdb -s /var/tmp/to_scwrl_1419307611.seq -o /var/tmp/from_scwrl_1419307611.pdb > /var/tmp/scwrl_1419307611.log Error: can't open any of /var/tmp/from_scwrl_1419307611.pdb or /var/tmp/from_scwrl_1419307611_b.pdb or /var/tmp/from_scwrl_1419307611_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1837682281.pdb -s /var/tmp/to_scwrl_1837682281.seq -o /var/tmp/from_scwrl_1837682281.pdb > /var/tmp/scwrl_1837682281.log Error: can't open any of /var/tmp/from_scwrl_1837682281.pdb or /var/tmp/from_scwrl_1837682281_b.pdb or /var/tmp/from_scwrl_1837682281_a.pdb Error: no new SCWRL conformation added # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2031267944.pdb -s /var/tmp/to_scwrl_2031267944.seq -o /var/tmp/from_scwrl_2031267944.pdb > /var/tmp/scwrl_2031267944.log Error: can't open any of /var/tmp/from_scwrl_2031267944.pdb or /var/tmp/from_scwrl_2031267944_b.pdb or /var/tmp/from_scwrl_2031267944_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 365 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1037782991.pdb -s /var/tmp/to_scwrl_1037782991.seq -o /var/tmp/from_scwrl_1037782991.pdb > /var/tmp/scwrl_1037782991.log Error: can't open any of /var/tmp/from_scwrl_1037782991.pdb or /var/tmp/from_scwrl_1037782991_b.pdb or /var/tmp/from_scwrl_1037782991_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 307 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_756927178.pdb -s /var/tmp/to_scwrl_756927178.seq -o /var/tmp/from_scwrl_756927178.pdb > /var/tmp/scwrl_756927178.log Error: can't open any of /var/tmp/from_scwrl_756927178.pdb or /var/tmp/from_scwrl_756927178_b.pdb or /var/tmp/from_scwrl_756927178_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1694164889.pdb -s /var/tmp/to_scwrl_1694164889.seq -o /var/tmp/from_scwrl_1694164889.pdb > /var/tmp/scwrl_1694164889.log Error: can't open any of /var/tmp/from_scwrl_1694164889.pdb or /var/tmp/from_scwrl_1694164889_b.pdb or /var/tmp/from_scwrl_1694164889_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1359122290.pdb -s /var/tmp/to_scwrl_1359122290.seq -o /var/tmp/from_scwrl_1359122290.pdb > /var/tmp/scwrl_1359122290.log Error: can't open any of /var/tmp/from_scwrl_1359122290.pdb or /var/tmp/from_scwrl_1359122290_b.pdb or /var/tmp/from_scwrl_1359122290_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 371 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1312017458.pdb -s /var/tmp/to_scwrl_1312017458.seq -o /var/tmp/from_scwrl_1312017458.pdb > /var/tmp/scwrl_1312017458.log Error: can't open any of /var/tmp/from_scwrl_1312017458.pdb or /var/tmp/from_scwrl_1312017458_b.pdb or /var/tmp/from_scwrl_1312017458_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 370 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1455903517.pdb -s /var/tmp/to_scwrl_1455903517.seq -o /var/tmp/from_scwrl_1455903517.pdb > /var/tmp/scwrl_1455903517.log Error: can't open any of /var/tmp/from_scwrl_1455903517.pdb or /var/tmp/from_scwrl_1455903517_b.pdb or /var/tmp/from_scwrl_1455903517_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # Found a chain break before 371 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1445810731.pdb -s /var/tmp/to_scwrl_1445810731.seq -o /var/tmp/from_scwrl_1445810731.pdb > /var/tmp/scwrl_1445810731.log Error: can't open any of /var/tmp/from_scwrl_1445810731.pdb or /var/tmp/from_scwrl_1445810731_b.pdb or /var/tmp/from_scwrl_1445810731_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # Found a chain break before 371 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_131952520.pdb -s /var/tmp/to_scwrl_131952520.seq -o /var/tmp/from_scwrl_131952520.pdb > /var/tmp/scwrl_131952520.log Error: can't open any of /var/tmp/from_scwrl_131952520.pdb or /var/tmp/from_scwrl_131952520_b.pdb or /var/tmp/from_scwrl_131952520_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 367 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1846266299.pdb -s /var/tmp/to_scwrl_1846266299.seq -o /var/tmp/from_scwrl_1846266299.pdb > /var/tmp/scwrl_1846266299.log Error: can't open any of /var/tmp/from_scwrl_1846266299.pdb or /var/tmp/from_scwrl_1846266299_b.pdb or /var/tmp/from_scwrl_1846266299_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1586625796.pdb -s /var/tmp/to_scwrl_1586625796.seq -o /var/tmp/from_scwrl_1586625796.pdb > /var/tmp/scwrl_1586625796.log Error: can't open any of /var/tmp/from_scwrl_1586625796.pdb or /var/tmp/from_scwrl_1586625796_b.pdb or /var/tmp/from_scwrl_1586625796_a.pdb Error: no new SCWRL conformation added # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_154386370.pdb -s /var/tmp/to_scwrl_154386370.seq -o /var/tmp/from_scwrl_154386370.pdb > /var/tmp/scwrl_154386370.log Error: can't open any of /var/tmp/from_scwrl_154386370.pdb or /var/tmp/from_scwrl_154386370_b.pdb or /var/tmp/from_scwrl_154386370_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1458757557.pdb -s /var/tmp/to_scwrl_1458757557.seq -o /var/tmp/from_scwrl_1458757557.pdb > /var/tmp/scwrl_1458757557.log Error: can't open any of /var/tmp/from_scwrl_1458757557.pdb or /var/tmp/from_scwrl_1458757557_b.pdb or /var/tmp/from_scwrl_1458757557_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_42157610.pdb -s /var/tmp/to_scwrl_42157610.seq -o /var/tmp/from_scwrl_42157610.pdb > /var/tmp/scwrl_42157610.log Error: can't open any of /var/tmp/from_scwrl_42157610.pdb or /var/tmp/from_scwrl_42157610_b.pdb or /var/tmp/from_scwrl_42157610_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_489227216.pdb -s /var/tmp/to_scwrl_489227216.seq -o /var/tmp/from_scwrl_489227216.pdb > /var/tmp/scwrl_489227216.log Error: can't open any of /var/tmp/from_scwrl_489227216.pdb or /var/tmp/from_scwrl_489227216_b.pdb or /var/tmp/from_scwrl_489227216_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_36085363.pdb -s /var/tmp/to_scwrl_36085363.seq -o /var/tmp/from_scwrl_36085363.pdb > /var/tmp/scwrl_36085363.log Error: can't open any of /var/tmp/from_scwrl_36085363.pdb or /var/tmp/from_scwrl_36085363_b.pdb or /var/tmp/from_scwrl_36085363_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2126595560.pdb -s /var/tmp/to_scwrl_2126595560.seq -o /var/tmp/from_scwrl_2126595560.pdb > /var/tmp/scwrl_2126595560.log Error: can't open any of /var/tmp/from_scwrl_2126595560.pdb or /var/tmp/from_scwrl_2126595560_b.pdb or /var/tmp/from_scwrl_2126595560_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_689534902.pdb -s /var/tmp/to_scwrl_689534902.seq -o /var/tmp/from_scwrl_689534902.pdb > /var/tmp/scwrl_689534902.log Error: can't open any of /var/tmp/from_scwrl_689534902.pdb or /var/tmp/from_scwrl_689534902_b.pdb or /var/tmp/from_scwrl_689534902_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1877229842.pdb -s /var/tmp/to_scwrl_1877229842.seq -o /var/tmp/from_scwrl_1877229842.pdb > /var/tmp/scwrl_1877229842.log Error: can't open any of /var/tmp/from_scwrl_1877229842.pdb or /var/tmp/from_scwrl_1877229842_b.pdb or /var/tmp/from_scwrl_1877229842_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1643626566.pdb -s /var/tmp/to_scwrl_1643626566.seq -o /var/tmp/from_scwrl_1643626566.pdb > /var/tmp/scwrl_1643626566.log Error: can't open any of /var/tmp/from_scwrl_1643626566.pdb or /var/tmp/from_scwrl_1643626566_b.pdb or /var/tmp/from_scwrl_1643626566_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1399094673.pdb -s /var/tmp/to_scwrl_1399094673.seq -o /var/tmp/from_scwrl_1399094673.pdb > /var/tmp/scwrl_1399094673.log Error: can't open any of /var/tmp/from_scwrl_1399094673.pdb or /var/tmp/from_scwrl_1399094673_b.pdb or /var/tmp/from_scwrl_1399094673_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 367 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1235337910.pdb -s /var/tmp/to_scwrl_1235337910.seq -o /var/tmp/from_scwrl_1235337910.pdb > /var/tmp/scwrl_1235337910.log Error: can't open any of /var/tmp/from_scwrl_1235337910.pdb or /var/tmp/from_scwrl_1235337910_b.pdb or /var/tmp/from_scwrl_1235337910_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # Found a chain break before 374 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_811207336.pdb -s /var/tmp/to_scwrl_811207336.seq -o /var/tmp/from_scwrl_811207336.pdb > /var/tmp/scwrl_811207336.log Error: can't open any of /var/tmp/from_scwrl_811207336.pdb or /var/tmp/from_scwrl_811207336_b.pdb or /var/tmp/from_scwrl_811207336_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1953069729.pdb -s /var/tmp/to_scwrl_1953069729.seq -o /var/tmp/from_scwrl_1953069729.pdb > /var/tmp/scwrl_1953069729.log Error: can't open any of /var/tmp/from_scwrl_1953069729.pdb or /var/tmp/from_scwrl_1953069729_b.pdb or /var/tmp/from_scwrl_1953069729_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1287123407.pdb -s /var/tmp/to_scwrl_1287123407.seq -o /var/tmp/from_scwrl_1287123407.pdb > /var/tmp/scwrl_1287123407.log Error: can't open any of /var/tmp/from_scwrl_1287123407.pdb or /var/tmp/from_scwrl_1287123407_b.pdb or /var/tmp/from_scwrl_1287123407_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2108873753.pdb -s /var/tmp/to_scwrl_2108873753.seq -o /var/tmp/from_scwrl_2108873753.pdb > /var/tmp/scwrl_2108873753.log Error: can't open any of /var/tmp/from_scwrl_2108873753.pdb or /var/tmp/from_scwrl_2108873753_b.pdb or /var/tmp/from_scwrl_2108873753_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_815520647.pdb -s /var/tmp/to_scwrl_815520647.seq -o /var/tmp/from_scwrl_815520647.pdb > /var/tmp/scwrl_815520647.log Error: can't open any of /var/tmp/from_scwrl_815520647.pdb or /var/tmp/from_scwrl_815520647_b.pdb or /var/tmp/from_scwrl_815520647_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 370 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1454893041.pdb -s /var/tmp/to_scwrl_1454893041.seq -o /var/tmp/from_scwrl_1454893041.pdb > /var/tmp/scwrl_1454893041.log Error: can't open any of /var/tmp/from_scwrl_1454893041.pdb or /var/tmp/from_scwrl_1454893041_b.pdb or /var/tmp/from_scwrl_1454893041_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 367 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_704103313.pdb -s /var/tmp/to_scwrl_704103313.seq -o /var/tmp/from_scwrl_704103313.pdb > /var/tmp/scwrl_704103313.log Error: can't open any of /var/tmp/from_scwrl_704103313.pdb or /var/tmp/from_scwrl_704103313_b.pdb or /var/tmp/from_scwrl_704103313_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 367 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_87344611.pdb -s /var/tmp/to_scwrl_87344611.seq -o /var/tmp/from_scwrl_87344611.pdb > /var/tmp/scwrl_87344611.log Error: can't open any of /var/tmp/from_scwrl_87344611.pdb or /var/tmp/from_scwrl_87344611_b.pdb or /var/tmp/from_scwrl_87344611_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 374 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1145091675.pdb -s /var/tmp/to_scwrl_1145091675.seq -o /var/tmp/from_scwrl_1145091675.pdb > /var/tmp/scwrl_1145091675.log Error: can't open any of /var/tmp/from_scwrl_1145091675.pdb or /var/tmp/from_scwrl_1145091675_b.pdb or /var/tmp/from_scwrl_1145091675_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_587887610.pdb -s /var/tmp/to_scwrl_587887610.seq -o /var/tmp/from_scwrl_587887610.pdb > /var/tmp/scwrl_587887610.log Error: can't open any of /var/tmp/from_scwrl_587887610.pdb or /var/tmp/from_scwrl_587887610_b.pdb or /var/tmp/from_scwrl_587887610_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 358 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1125127602.pdb -s /var/tmp/to_scwrl_1125127602.seq -o /var/tmp/from_scwrl_1125127602.pdb > /var/tmp/scwrl_1125127602.log Error: can't open any of /var/tmp/from_scwrl_1125127602.pdb or /var/tmp/from_scwrl_1125127602_b.pdb or /var/tmp/from_scwrl_1125127602_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 327 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1902018854.pdb -s /var/tmp/to_scwrl_1902018854.seq -o /var/tmp/from_scwrl_1902018854.pdb > /var/tmp/scwrl_1902018854.log Error: can't open any of /var/tmp/from_scwrl_1902018854.pdb or /var/tmp/from_scwrl_1902018854_b.pdb or /var/tmp/from_scwrl_1902018854_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 331 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_134568852.pdb -s /var/tmp/to_scwrl_134568852.seq -o /var/tmp/from_scwrl_134568852.pdb > /var/tmp/scwrl_134568852.log Error: can't open any of /var/tmp/from_scwrl_134568852.pdb or /var/tmp/from_scwrl_134568852_b.pdb or /var/tmp/from_scwrl_134568852_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 343 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_336766246.pdb -s /var/tmp/to_scwrl_336766246.seq -o /var/tmp/from_scwrl_336766246.pdb > /var/tmp/scwrl_336766246.log Error: can't open any of /var/tmp/from_scwrl_336766246.pdb or /var/tmp/from_scwrl_336766246_b.pdb or /var/tmp/from_scwrl_336766246_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1066552666.pdb -s /var/tmp/to_scwrl_1066552666.seq -o /var/tmp/from_scwrl_1066552666.pdb > /var/tmp/scwrl_1066552666.log Error: can't open any of /var/tmp/from_scwrl_1066552666.pdb or /var/tmp/from_scwrl_1066552666_b.pdb or /var/tmp/from_scwrl_1066552666_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1590472370.pdb -s /var/tmp/to_scwrl_1590472370.seq -o /var/tmp/from_scwrl_1590472370.pdb > /var/tmp/scwrl_1590472370.log Error: can't open any of /var/tmp/from_scwrl_1590472370.pdb or /var/tmp/from_scwrl_1590472370_b.pdb or /var/tmp/from_scwrl_1590472370_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1782576977.pdb -s /var/tmp/to_scwrl_1782576977.seq -o /var/tmp/from_scwrl_1782576977.pdb > /var/tmp/scwrl_1782576977.log Error: can't open any of /var/tmp/from_scwrl_1782576977.pdb or /var/tmp/from_scwrl_1782576977_b.pdb or /var/tmp/from_scwrl_1782576977_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1198505185.pdb -s /var/tmp/to_scwrl_1198505185.seq -o /var/tmp/from_scwrl_1198505185.pdb > /var/tmp/scwrl_1198505185.log Error: can't open any of /var/tmp/from_scwrl_1198505185.pdb or /var/tmp/from_scwrl_1198505185_b.pdb or /var/tmp/from_scwrl_1198505185_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1289255022.pdb -s /var/tmp/to_scwrl_1289255022.seq -o /var/tmp/from_scwrl_1289255022.pdb > /var/tmp/scwrl_1289255022.log Error: can't open any of /var/tmp/from_scwrl_1289255022.pdb or /var/tmp/from_scwrl_1289255022_b.pdb or /var/tmp/from_scwrl_1289255022_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1221719126.pdb -s /var/tmp/to_scwrl_1221719126.seq -o /var/tmp/from_scwrl_1221719126.pdb > /var/tmp/scwrl_1221719126.log Error: can't open any of /var/tmp/from_scwrl_1221719126.pdb or /var/tmp/from_scwrl_1221719126_b.pdb or /var/tmp/from_scwrl_1221719126_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1352891555.pdb -s /var/tmp/to_scwrl_1352891555.seq -o /var/tmp/from_scwrl_1352891555.pdb > /var/tmp/scwrl_1352891555.log Error: can't open any of /var/tmp/from_scwrl_1352891555.pdb or /var/tmp/from_scwrl_1352891555_b.pdb or /var/tmp/from_scwrl_1352891555_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_600528933.pdb -s /var/tmp/to_scwrl_600528933.seq -o /var/tmp/from_scwrl_600528933.pdb > /var/tmp/scwrl_600528933.log Error: can't open any of /var/tmp/from_scwrl_600528933.pdb or /var/tmp/from_scwrl_600528933_b.pdb or /var/tmp/from_scwrl_600528933_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1263876737.pdb -s /var/tmp/to_scwrl_1263876737.seq -o /var/tmp/from_scwrl_1263876737.pdb > /var/tmp/scwrl_1263876737.log Error: can't open any of /var/tmp/from_scwrl_1263876737.pdb or /var/tmp/from_scwrl_1263876737_b.pdb or /var/tmp/from_scwrl_1263876737_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1842118771.pdb -s /var/tmp/to_scwrl_1842118771.seq -o /var/tmp/from_scwrl_1842118771.pdb > /var/tmp/scwrl_1842118771.log Error: can't open any of /var/tmp/from_scwrl_1842118771.pdb or /var/tmp/from_scwrl_1842118771_b.pdb or /var/tmp/from_scwrl_1842118771_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 368 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_636614296.pdb -s /var/tmp/to_scwrl_636614296.seq -o /var/tmp/from_scwrl_636614296.pdb > /var/tmp/scwrl_636614296.log Error: can't open any of /var/tmp/from_scwrl_636614296.pdb or /var/tmp/from_scwrl_636614296_b.pdb or /var/tmp/from_scwrl_636614296_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 365 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1242988650.pdb -s /var/tmp/to_scwrl_1242988650.seq -o /var/tmp/from_scwrl_1242988650.pdb > /var/tmp/scwrl_1242988650.log Error: can't open any of /var/tmp/from_scwrl_1242988650.pdb or /var/tmp/from_scwrl_1242988650_b.pdb or /var/tmp/from_scwrl_1242988650_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 369 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_384170026.pdb -s /var/tmp/to_scwrl_384170026.seq -o /var/tmp/from_scwrl_384170026.pdb > /var/tmp/scwrl_384170026.log Error: can't open any of /var/tmp/from_scwrl_384170026.pdb or /var/tmp/from_scwrl_384170026_b.pdb or /var/tmp/from_scwrl_384170026_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_366360492.pdb -s /var/tmp/to_scwrl_366360492.seq -o /var/tmp/from_scwrl_366360492.pdb > /var/tmp/scwrl_366360492.log Error: can't open any of /var/tmp/from_scwrl_366360492.pdb or /var/tmp/from_scwrl_366360492_b.pdb or /var/tmp/from_scwrl_366360492_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_739131570.pdb -s /var/tmp/to_scwrl_739131570.seq -o /var/tmp/from_scwrl_739131570.pdb > /var/tmp/scwrl_739131570.log Error: can't open any of /var/tmp/from_scwrl_739131570.pdb or /var/tmp/from_scwrl_739131570_b.pdb or /var/tmp/from_scwrl_739131570_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1783264699.pdb -s /var/tmp/to_scwrl_1783264699.seq -o /var/tmp/from_scwrl_1783264699.pdb > /var/tmp/scwrl_1783264699.log Error: can't open any of /var/tmp/from_scwrl_1783264699.pdb or /var/tmp/from_scwrl_1783264699_b.pdb or /var/tmp/from_scwrl_1783264699_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1601698402.pdb -s /var/tmp/to_scwrl_1601698402.seq -o /var/tmp/from_scwrl_1601698402.pdb > /var/tmp/scwrl_1601698402.log Error: can't open any of /var/tmp/from_scwrl_1601698402.pdb or /var/tmp/from_scwrl_1601698402_b.pdb or /var/tmp/from_scwrl_1601698402_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1550338906.pdb -s /var/tmp/to_scwrl_1550338906.seq -o /var/tmp/from_scwrl_1550338906.pdb > /var/tmp/scwrl_1550338906.log Error: can't open any of /var/tmp/from_scwrl_1550338906.pdb or /var/tmp/from_scwrl_1550338906_b.pdb or /var/tmp/from_scwrl_1550338906_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 319 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1588850781.pdb -s /var/tmp/to_scwrl_1588850781.seq -o /var/tmp/from_scwrl_1588850781.pdb > /var/tmp/scwrl_1588850781.log Error: can't open any of /var/tmp/from_scwrl_1588850781.pdb or /var/tmp/from_scwrl_1588850781_b.pdb or /var/tmp/from_scwrl_1588850781_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_741338163.pdb -s /var/tmp/to_scwrl_741338163.seq -o /var/tmp/from_scwrl_741338163.pdb > /var/tmp/scwrl_741338163.log Error: can't open any of /var/tmp/from_scwrl_741338163.pdb or /var/tmp/from_scwrl_741338163_b.pdb or /var/tmp/from_scwrl_741338163_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1511729012.pdb -s /var/tmp/to_scwrl_1511729012.seq -o /var/tmp/from_scwrl_1511729012.pdb > /var/tmp/scwrl_1511729012.log Error: can't open any of /var/tmp/from_scwrl_1511729012.pdb or /var/tmp/from_scwrl_1511729012_b.pdb or /var/tmp/from_scwrl_1511729012_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_256887781.pdb -s /var/tmp/to_scwrl_256887781.seq -o /var/tmp/from_scwrl_256887781.pdb > /var/tmp/scwrl_256887781.log Error: can't open any of /var/tmp/from_scwrl_256887781.pdb or /var/tmp/from_scwrl_256887781_b.pdb or /var/tmp/from_scwrl_256887781_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_48747557.pdb -s /var/tmp/to_scwrl_48747557.seq -o /var/tmp/from_scwrl_48747557.pdb > /var/tmp/scwrl_48747557.log Error: can't open any of /var/tmp/from_scwrl_48747557.pdb or /var/tmp/from_scwrl_48747557_b.pdb or /var/tmp/from_scwrl_48747557_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_68348678.pdb -s /var/tmp/to_scwrl_68348678.seq -o /var/tmp/from_scwrl_68348678.pdb > /var/tmp/scwrl_68348678.log Error: can't open any of /var/tmp/from_scwrl_68348678.pdb or /var/tmp/from_scwrl_68348678_b.pdb or /var/tmp/from_scwrl_68348678_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_344232393.pdb -s /var/tmp/to_scwrl_344232393.seq -o /var/tmp/from_scwrl_344232393.pdb > /var/tmp/scwrl_344232393.log Error: can't open any of /var/tmp/from_scwrl_344232393.pdb or /var/tmp/from_scwrl_344232393_b.pdb or /var/tmp/from_scwrl_344232393_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 371 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1193839232.pdb -s /var/tmp/to_scwrl_1193839232.seq -o /var/tmp/from_scwrl_1193839232.pdb > /var/tmp/scwrl_1193839232.log Error: can't open any of /var/tmp/from_scwrl_1193839232.pdb or /var/tmp/from_scwrl_1193839232_b.pdb or /var/tmp/from_scwrl_1193839232_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_656236289.pdb -s /var/tmp/to_scwrl_656236289.seq -o /var/tmp/from_scwrl_656236289.pdb > /var/tmp/scwrl_656236289.log Error: can't open any of /var/tmp/from_scwrl_656236289.pdb or /var/tmp/from_scwrl_656236289_b.pdb or /var/tmp/from_scwrl_656236289_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 371 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1469359995.pdb -s /var/tmp/to_scwrl_1469359995.seq -o /var/tmp/from_scwrl_1469359995.pdb > /var/tmp/scwrl_1469359995.log Error: can't open any of /var/tmp/from_scwrl_1469359995.pdb or /var/tmp/from_scwrl_1469359995_b.pdb or /var/tmp/from_scwrl_1469359995_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 363 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_948374440.pdb -s /var/tmp/to_scwrl_948374440.seq -o /var/tmp/from_scwrl_948374440.pdb > /var/tmp/scwrl_948374440.log Error: can't open any of /var/tmp/from_scwrl_948374440.pdb or /var/tmp/from_scwrl_948374440_b.pdb or /var/tmp/from_scwrl_948374440_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 372 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_790805141.pdb -s /var/tmp/to_scwrl_790805141.seq -o /var/tmp/from_scwrl_790805141.pdb > /var/tmp/scwrl_790805141.log Error: can't open any of /var/tmp/from_scwrl_790805141.pdb or /var/tmp/from_scwrl_790805141_b.pdb or /var/tmp/from_scwrl_790805141_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1806126241.pdb -s /var/tmp/to_scwrl_1806126241.seq -o /var/tmp/from_scwrl_1806126241.pdb > /var/tmp/scwrl_1806126241.log Error: can't open any of /var/tmp/from_scwrl_1806126241.pdb or /var/tmp/from_scwrl_1806126241_b.pdb or /var/tmp/from_scwrl_1806126241_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 342 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2014927105.pdb -s /var/tmp/to_scwrl_2014927105.seq -o /var/tmp/from_scwrl_2014927105.pdb > /var/tmp/scwrl_2014927105.log Error: can't open any of /var/tmp/from_scwrl_2014927105.pdb or /var/tmp/from_scwrl_2014927105_b.pdb or /var/tmp/from_scwrl_2014927105_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_233793864.pdb -s /var/tmp/to_scwrl_233793864.seq -o /var/tmp/from_scwrl_233793864.pdb > /var/tmp/scwrl_233793864.log Error: can't open any of /var/tmp/from_scwrl_233793864.pdb or /var/tmp/from_scwrl_233793864_b.pdb or /var/tmp/from_scwrl_233793864_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1441219572.pdb -s /var/tmp/to_scwrl_1441219572.seq -o /var/tmp/from_scwrl_1441219572.pdb > /var/tmp/scwrl_1441219572.log Error: can't open any of /var/tmp/from_scwrl_1441219572.pdb or /var/tmp/from_scwrl_1441219572_b.pdb or /var/tmp/from_scwrl_1441219572_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1065948644.pdb -s /var/tmp/to_scwrl_1065948644.seq -o /var/tmp/from_scwrl_1065948644.pdb > /var/tmp/scwrl_1065948644.log Error: can't open any of /var/tmp/from_scwrl_1065948644.pdb or /var/tmp/from_scwrl_1065948644_b.pdb or /var/tmp/from_scwrl_1065948644_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1523048887.pdb -s /var/tmp/to_scwrl_1523048887.seq -o /var/tmp/from_scwrl_1523048887.pdb > /var/tmp/scwrl_1523048887.log Error: can't open any of /var/tmp/from_scwrl_1523048887.pdb or /var/tmp/from_scwrl_1523048887_b.pdb or /var/tmp/from_scwrl_1523048887_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_515455052.pdb -s /var/tmp/to_scwrl_515455052.seq -o /var/tmp/from_scwrl_515455052.pdb > /var/tmp/scwrl_515455052.log Error: can't open any of /var/tmp/from_scwrl_515455052.pdb or /var/tmp/from_scwrl_515455052_b.pdb or /var/tmp/from_scwrl_515455052_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_271356552.pdb -s /var/tmp/to_scwrl_271356552.seq -o /var/tmp/from_scwrl_271356552.pdb > /var/tmp/scwrl_271356552.log Error: can't open any of /var/tmp/from_scwrl_271356552.pdb or /var/tmp/from_scwrl_271356552_b.pdb or /var/tmp/from_scwrl_271356552_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2123577820.pdb -s /var/tmp/to_scwrl_2123577820.seq -o /var/tmp/from_scwrl_2123577820.pdb > /var/tmp/scwrl_2123577820.log Error: can't open any of /var/tmp/from_scwrl_2123577820.pdb or /var/tmp/from_scwrl_2123577820_b.pdb or /var/tmp/from_scwrl_2123577820_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1779331789.pdb -s /var/tmp/to_scwrl_1779331789.seq -o /var/tmp/from_scwrl_1779331789.pdb > /var/tmp/scwrl_1779331789.log Error: can't open any of /var/tmp/from_scwrl_1779331789.pdb or /var/tmp/from_scwrl_1779331789_b.pdb or /var/tmp/from_scwrl_1779331789_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2113475323.pdb -s /var/tmp/to_scwrl_2113475323.seq -o /var/tmp/from_scwrl_2113475323.pdb > /var/tmp/scwrl_2113475323.log Error: can't open any of /var/tmp/from_scwrl_2113475323.pdb or /var/tmp/from_scwrl_2113475323_b.pdb or /var/tmp/from_scwrl_2113475323_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_612708470.pdb -s /var/tmp/to_scwrl_612708470.seq -o /var/tmp/from_scwrl_612708470.pdb > /var/tmp/scwrl_612708470.log Error: can't open any of /var/tmp/from_scwrl_612708470.pdb or /var/tmp/from_scwrl_612708470_b.pdb or /var/tmp/from_scwrl_612708470_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_874836793.pdb -s /var/tmp/to_scwrl_874836793.seq -o /var/tmp/from_scwrl_874836793.pdb > /var/tmp/scwrl_874836793.log Error: can't open any of /var/tmp/from_scwrl_874836793.pdb or /var/tmp/from_scwrl_874836793_b.pdb or /var/tmp/from_scwrl_874836793_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_350161703.pdb -s /var/tmp/to_scwrl_350161703.seq -o /var/tmp/from_scwrl_350161703.pdb > /var/tmp/scwrl_350161703.log Error: can't open any of /var/tmp/from_scwrl_350161703.pdb or /var/tmp/from_scwrl_350161703_b.pdb or /var/tmp/from_scwrl_350161703_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 357 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_979068962.pdb -s /var/tmp/to_scwrl_979068962.seq -o /var/tmp/from_scwrl_979068962.pdb > /var/tmp/scwrl_979068962.log Error: can't open any of /var/tmp/from_scwrl_979068962.pdb or /var/tmp/from_scwrl_979068962_b.pdb or /var/tmp/from_scwrl_979068962_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1613968363.pdb -s /var/tmp/to_scwrl_1613968363.seq -o /var/tmp/from_scwrl_1613968363.pdb > /var/tmp/scwrl_1613968363.log Error: can't open any of /var/tmp/from_scwrl_1613968363.pdb or /var/tmp/from_scwrl_1613968363_b.pdb or /var/tmp/from_scwrl_1613968363_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 371 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2133426402.pdb -s /var/tmp/to_scwrl_2133426402.seq -o /var/tmp/from_scwrl_2133426402.pdb > /var/tmp/scwrl_2133426402.log Error: can't open any of /var/tmp/from_scwrl_2133426402.pdb or /var/tmp/from_scwrl_2133426402_b.pdb or /var/tmp/from_scwrl_2133426402_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 374 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_433283717.pdb -s /var/tmp/to_scwrl_433283717.seq -o /var/tmp/from_scwrl_433283717.pdb > /var/tmp/scwrl_433283717.log Error: can't open any of /var/tmp/from_scwrl_433283717.pdb or /var/tmp/from_scwrl_433283717_b.pdb or /var/tmp/from_scwrl_433283717_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1016823623.pdb -s /var/tmp/to_scwrl_1016823623.seq -o /var/tmp/from_scwrl_1016823623.pdb > /var/tmp/scwrl_1016823623.log Error: can't open any of /var/tmp/from_scwrl_1016823623.pdb or /var/tmp/from_scwrl_1016823623_b.pdb or /var/tmp/from_scwrl_1016823623_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1574793537.pdb -s /var/tmp/to_scwrl_1574793537.seq -o /var/tmp/from_scwrl_1574793537.pdb > /var/tmp/scwrl_1574793537.log Error: can't open any of /var/tmp/from_scwrl_1574793537.pdb or /var/tmp/from_scwrl_1574793537_b.pdb or /var/tmp/from_scwrl_1574793537_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 357 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1174621879.pdb -s /var/tmp/to_scwrl_1174621879.seq -o /var/tmp/from_scwrl_1174621879.pdb > /var/tmp/scwrl_1174621879.log Error: can't open any of /var/tmp/from_scwrl_1174621879.pdb or /var/tmp/from_scwrl_1174621879_b.pdb or /var/tmp/from_scwrl_1174621879_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_381068988.pdb -s /var/tmp/to_scwrl_381068988.seq -o /var/tmp/from_scwrl_381068988.pdb > /var/tmp/scwrl_381068988.log Error: can't open any of /var/tmp/from_scwrl_381068988.pdb or /var/tmp/from_scwrl_381068988_b.pdb or /var/tmp/from_scwrl_381068988_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1831681318.pdb -s /var/tmp/to_scwrl_1831681318.seq -o /var/tmp/from_scwrl_1831681318.pdb > /var/tmp/scwrl_1831681318.log Error: can't open any of /var/tmp/from_scwrl_1831681318.pdb or /var/tmp/from_scwrl_1831681318_b.pdb or /var/tmp/from_scwrl_1831681318_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 369 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1223369436.pdb -s /var/tmp/to_scwrl_1223369436.seq -o /var/tmp/from_scwrl_1223369436.pdb > /var/tmp/scwrl_1223369436.log Error: can't open any of /var/tmp/from_scwrl_1223369436.pdb or /var/tmp/from_scwrl_1223369436_b.pdb or /var/tmp/from_scwrl_1223369436_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 341 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_449417666.pdb -s /var/tmp/to_scwrl_449417666.seq -o /var/tmp/from_scwrl_449417666.pdb > /var/tmp/scwrl_449417666.log Error: can't open any of /var/tmp/from_scwrl_449417666.pdb or /var/tmp/from_scwrl_449417666_b.pdb or /var/tmp/from_scwrl_449417666_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 369 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_28430064.pdb -s /var/tmp/to_scwrl_28430064.seq -o /var/tmp/from_scwrl_28430064.pdb > /var/tmp/scwrl_28430064.log Error: can't open any of /var/tmp/from_scwrl_28430064.pdb or /var/tmp/from_scwrl_28430064_b.pdb or /var/tmp/from_scwrl_28430064_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 367 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_269725022.pdb -s /var/tmp/to_scwrl_269725022.seq -o /var/tmp/from_scwrl_269725022.pdb > /var/tmp/scwrl_269725022.log Error: can't open any of /var/tmp/from_scwrl_269725022.pdb or /var/tmp/from_scwrl_269725022_b.pdb or /var/tmp/from_scwrl_269725022_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1105653954.pdb -s /var/tmp/to_scwrl_1105653954.seq -o /var/tmp/from_scwrl_1105653954.pdb > /var/tmp/scwrl_1105653954.log Error: can't open any of /var/tmp/from_scwrl_1105653954.pdb or /var/tmp/from_scwrl_1105653954_b.pdb or /var/tmp/from_scwrl_1105653954_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1497790059.pdb -s /var/tmp/to_scwrl_1497790059.seq -o /var/tmp/from_scwrl_1497790059.pdb > /var/tmp/scwrl_1497790059.log Error: can't open any of /var/tmp/from_scwrl_1497790059.pdb or /var/tmp/from_scwrl_1497790059_b.pdb or /var/tmp/from_scwrl_1497790059_a.pdb Error: no new SCWRL conformation added # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1218099462.pdb -s /var/tmp/to_scwrl_1218099462.seq -o /var/tmp/from_scwrl_1218099462.pdb > /var/tmp/scwrl_1218099462.log Error: can't open any of /var/tmp/from_scwrl_1218099462.pdb or /var/tmp/from_scwrl_1218099462_b.pdb or /var/tmp/from_scwrl_1218099462_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1896459096.pdb -s /var/tmp/to_scwrl_1896459096.seq -o /var/tmp/from_scwrl_1896459096.pdb > /var/tmp/scwrl_1896459096.log Error: can't open any of /var/tmp/from_scwrl_1896459096.pdb or /var/tmp/from_scwrl_1896459096_b.pdb or /var/tmp/from_scwrl_1896459096_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1156432654.pdb -s /var/tmp/to_scwrl_1156432654.seq -o /var/tmp/from_scwrl_1156432654.pdb > /var/tmp/scwrl_1156432654.log Error: can't open any of /var/tmp/from_scwrl_1156432654.pdb or /var/tmp/from_scwrl_1156432654_b.pdb or /var/tmp/from_scwrl_1156432654_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1085542920.pdb -s /var/tmp/to_scwrl_1085542920.seq -o /var/tmp/from_scwrl_1085542920.pdb > /var/tmp/scwrl_1085542920.log Error: can't open any of /var/tmp/from_scwrl_1085542920.pdb or /var/tmp/from_scwrl_1085542920_b.pdb or /var/tmp/from_scwrl_1085542920_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2130252960.pdb -s /var/tmp/to_scwrl_2130252960.seq -o /var/tmp/from_scwrl_2130252960.pdb > /var/tmp/scwrl_2130252960.log Error: can't open any of /var/tmp/from_scwrl_2130252960.pdb or /var/tmp/from_scwrl_2130252960_b.pdb or /var/tmp/from_scwrl_2130252960_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_450168580.pdb -s /var/tmp/to_scwrl_450168580.seq -o /var/tmp/from_scwrl_450168580.pdb > /var/tmp/scwrl_450168580.log Error: can't open any of /var/tmp/from_scwrl_450168580.pdb or /var/tmp/from_scwrl_450168580_b.pdb or /var/tmp/from_scwrl_450168580_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_4007918.pdb -s /var/tmp/to_scwrl_4007918.seq -o /var/tmp/from_scwrl_4007918.pdb > /var/tmp/scwrl_4007918.log Error: can't open any of /var/tmp/from_scwrl_4007918.pdb or /var/tmp/from_scwrl_4007918_b.pdb or /var/tmp/from_scwrl_4007918_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1505818200.pdb -s /var/tmp/to_scwrl_1505818200.seq -o /var/tmp/from_scwrl_1505818200.pdb > /var/tmp/scwrl_1505818200.log Error: can't open any of /var/tmp/from_scwrl_1505818200.pdb or /var/tmp/from_scwrl_1505818200_b.pdb or /var/tmp/from_scwrl_1505818200_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_965623632.pdb -s /var/tmp/to_scwrl_965623632.seq -o /var/tmp/from_scwrl_965623632.pdb > /var/tmp/scwrl_965623632.log Error: can't open any of /var/tmp/from_scwrl_965623632.pdb or /var/tmp/from_scwrl_965623632_b.pdb or /var/tmp/from_scwrl_965623632_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_275364470.pdb -s /var/tmp/to_scwrl_275364470.seq -o /var/tmp/from_scwrl_275364470.pdb > /var/tmp/scwrl_275364470.log Error: can't open any of /var/tmp/from_scwrl_275364470.pdb or /var/tmp/from_scwrl_275364470_b.pdb or /var/tmp/from_scwrl_275364470_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1481912374.pdb -s /var/tmp/to_scwrl_1481912374.seq -o /var/tmp/from_scwrl_1481912374.pdb > /var/tmp/scwrl_1481912374.log Error: can't open any of /var/tmp/from_scwrl_1481912374.pdb or /var/tmp/from_scwrl_1481912374_b.pdb or /var/tmp/from_scwrl_1481912374_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_597471775.pdb -s /var/tmp/to_scwrl_597471775.seq -o /var/tmp/from_scwrl_597471775.pdb > /var/tmp/scwrl_597471775.log Error: can't open any of /var/tmp/from_scwrl_597471775.pdb or /var/tmp/from_scwrl_597471775_b.pdb or /var/tmp/from_scwrl_597471775_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_241356147.pdb -s /var/tmp/to_scwrl_241356147.seq -o /var/tmp/from_scwrl_241356147.pdb > /var/tmp/scwrl_241356147.log Error: can't open any of /var/tmp/from_scwrl_241356147.pdb or /var/tmp/from_scwrl_241356147_b.pdb or /var/tmp/from_scwrl_241356147_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2094620844.pdb -s /var/tmp/to_scwrl_2094620844.seq -o /var/tmp/from_scwrl_2094620844.pdb > /var/tmp/scwrl_2094620844.log Error: can't open any of /var/tmp/from_scwrl_2094620844.pdb or /var/tmp/from_scwrl_2094620844_b.pdb or /var/tmp/from_scwrl_2094620844_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1472308567.pdb -s /var/tmp/to_scwrl_1472308567.seq -o /var/tmp/from_scwrl_1472308567.pdb > /var/tmp/scwrl_1472308567.log Error: can't open any of /var/tmp/from_scwrl_1472308567.pdb or /var/tmp/from_scwrl_1472308567_b.pdb or /var/tmp/from_scwrl_1472308567_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_591517850.pdb -s /var/tmp/to_scwrl_591517850.seq -o /var/tmp/from_scwrl_591517850.pdb > /var/tmp/scwrl_591517850.log Error: can't open any of /var/tmp/from_scwrl_591517850.pdb or /var/tmp/from_scwrl_591517850_b.pdb or /var/tmp/from_scwrl_591517850_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_926206159.pdb -s /var/tmp/to_scwrl_926206159.seq -o /var/tmp/from_scwrl_926206159.pdb > /var/tmp/scwrl_926206159.log Error: can't open any of /var/tmp/from_scwrl_926206159.pdb or /var/tmp/from_scwrl_926206159_b.pdb or /var/tmp/from_scwrl_926206159_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_938793284.pdb -s /var/tmp/to_scwrl_938793284.seq -o /var/tmp/from_scwrl_938793284.pdb > /var/tmp/scwrl_938793284.log Error: can't open any of /var/tmp/from_scwrl_938793284.pdb or /var/tmp/from_scwrl_938793284_b.pdb or /var/tmp/from_scwrl_938793284_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_577460605.pdb -s /var/tmp/to_scwrl_577460605.seq -o /var/tmp/from_scwrl_577460605.pdb > /var/tmp/scwrl_577460605.log Error: can't open any of /var/tmp/from_scwrl_577460605.pdb or /var/tmp/from_scwrl_577460605_b.pdb or /var/tmp/from_scwrl_577460605_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1359489875.pdb -s /var/tmp/to_scwrl_1359489875.seq -o /var/tmp/from_scwrl_1359489875.pdb > /var/tmp/scwrl_1359489875.log Error: can't open any of /var/tmp/from_scwrl_1359489875.pdb or /var/tmp/from_scwrl_1359489875_b.pdb or /var/tmp/from_scwrl_1359489875_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1955616906.pdb -s /var/tmp/to_scwrl_1955616906.seq -o /var/tmp/from_scwrl_1955616906.pdb > /var/tmp/scwrl_1955616906.log Error: can't open any of /var/tmp/from_scwrl_1955616906.pdb or /var/tmp/from_scwrl_1955616906_b.pdb or /var/tmp/from_scwrl_1955616906_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_4770495.pdb -s /var/tmp/to_scwrl_4770495.seq -o /var/tmp/from_scwrl_4770495.pdb > /var/tmp/scwrl_4770495.log Error: can't open any of /var/tmp/from_scwrl_4770495.pdb or /var/tmp/from_scwrl_4770495_b.pdb or /var/tmp/from_scwrl_4770495_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_386628108.pdb -s /var/tmp/to_scwrl_386628108.seq -o /var/tmp/from_scwrl_386628108.pdb > /var/tmp/scwrl_386628108.log Error: can't open any of /var/tmp/from_scwrl_386628108.pdb or /var/tmp/from_scwrl_386628108_b.pdb or /var/tmp/from_scwrl_386628108_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 358 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_189202247.pdb -s /var/tmp/to_scwrl_189202247.seq -o /var/tmp/from_scwrl_189202247.pdb > /var/tmp/scwrl_189202247.log Error: can't open any of /var/tmp/from_scwrl_189202247.pdb or /var/tmp/from_scwrl_189202247_b.pdb or /var/tmp/from_scwrl_189202247_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1836451814.pdb -s /var/tmp/to_scwrl_1836451814.seq -o /var/tmp/from_scwrl_1836451814.pdb > /var/tmp/scwrl_1836451814.log Error: can't open any of /var/tmp/from_scwrl_1836451814.pdb or /var/tmp/from_scwrl_1836451814_b.pdb or /var/tmp/from_scwrl_1836451814_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 374 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1609997544.pdb -s /var/tmp/to_scwrl_1609997544.seq -o /var/tmp/from_scwrl_1609997544.pdb > /var/tmp/scwrl_1609997544.log Error: can't open any of /var/tmp/from_scwrl_1609997544.pdb or /var/tmp/from_scwrl_1609997544_b.pdb or /var/tmp/from_scwrl_1609997544_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_638619914.pdb -s /var/tmp/to_scwrl_638619914.seq -o /var/tmp/from_scwrl_638619914.pdb > /var/tmp/scwrl_638619914.log Error: can't open any of /var/tmp/from_scwrl_638619914.pdb or /var/tmp/from_scwrl_638619914_b.pdb or /var/tmp/from_scwrl_638619914_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1864881878.pdb -s /var/tmp/to_scwrl_1864881878.seq -o /var/tmp/from_scwrl_1864881878.pdb > /var/tmp/scwrl_1864881878.log Error: can't open any of /var/tmp/from_scwrl_1864881878.pdb or /var/tmp/from_scwrl_1864881878_b.pdb or /var/tmp/from_scwrl_1864881878_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1879722566.pdb -s /var/tmp/to_scwrl_1879722566.seq -o /var/tmp/from_scwrl_1879722566.pdb > /var/tmp/scwrl_1879722566.log Error: can't open any of /var/tmp/from_scwrl_1879722566.pdb or /var/tmp/from_scwrl_1879722566_b.pdb or /var/tmp/from_scwrl_1879722566_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 356 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1744273868.pdb -s /var/tmp/to_scwrl_1744273868.seq -o /var/tmp/from_scwrl_1744273868.pdb > /var/tmp/scwrl_1744273868.log Error: can't open any of /var/tmp/from_scwrl_1744273868.pdb or /var/tmp/from_scwrl_1744273868_b.pdb or /var/tmp/from_scwrl_1744273868_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1215188291.pdb -s /var/tmp/to_scwrl_1215188291.seq -o /var/tmp/from_scwrl_1215188291.pdb > /var/tmp/scwrl_1215188291.log Error: can't open any of /var/tmp/from_scwrl_1215188291.pdb or /var/tmp/from_scwrl_1215188291_b.pdb or /var/tmp/from_scwrl_1215188291_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 373 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_950338382.pdb -s /var/tmp/to_scwrl_950338382.seq -o /var/tmp/from_scwrl_950338382.pdb > /var/tmp/scwrl_950338382.log Error: can't open any of /var/tmp/from_scwrl_950338382.pdb or /var/tmp/from_scwrl_950338382_b.pdb or /var/tmp/from_scwrl_950338382_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 329 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1493249317.pdb -s /var/tmp/to_scwrl_1493249317.seq -o /var/tmp/from_scwrl_1493249317.pdb > /var/tmp/scwrl_1493249317.log Error: can't open any of /var/tmp/from_scwrl_1493249317.pdb or /var/tmp/from_scwrl_1493249317_b.pdb or /var/tmp/from_scwrl_1493249317_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_224137299.pdb -s /var/tmp/to_scwrl_224137299.seq -o /var/tmp/from_scwrl_224137299.pdb > /var/tmp/scwrl_224137299.log Error: can't open any of /var/tmp/from_scwrl_224137299.pdb or /var/tmp/from_scwrl_224137299_b.pdb or /var/tmp/from_scwrl_224137299_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 327 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2035881303.pdb -s /var/tmp/to_scwrl_2035881303.seq -o /var/tmp/from_scwrl_2035881303.pdb > /var/tmp/scwrl_2035881303.log Error: can't open any of /var/tmp/from_scwrl_2035881303.pdb or /var/tmp/from_scwrl_2035881303_b.pdb or /var/tmp/from_scwrl_2035881303_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1476018631.pdb -s /var/tmp/to_scwrl_1476018631.seq -o /var/tmp/from_scwrl_1476018631.pdb > /var/tmp/scwrl_1476018631.log Error: can't open any of /var/tmp/from_scwrl_1476018631.pdb or /var/tmp/from_scwrl_1476018631_b.pdb or /var/tmp/from_scwrl_1476018631_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_674305879.pdb -s /var/tmp/to_scwrl_674305879.seq -o /var/tmp/from_scwrl_674305879.pdb > /var/tmp/scwrl_674305879.log Error: can't open any of /var/tmp/from_scwrl_674305879.pdb or /var/tmp/from_scwrl_674305879_b.pdb or /var/tmp/from_scwrl_674305879_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2039889221.pdb -s /var/tmp/to_scwrl_2039889221.seq -o /var/tmp/from_scwrl_2039889221.pdb > /var/tmp/scwrl_2039889221.log Error: can't open any of /var/tmp/from_scwrl_2039889221.pdb or /var/tmp/from_scwrl_2039889221_b.pdb or /var/tmp/from_scwrl_2039889221_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 343 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_834353185.pdb -s /var/tmp/to_scwrl_834353185.seq -o /var/tmp/from_scwrl_834353185.pdb > /var/tmp/scwrl_834353185.log Error: can't open any of /var/tmp/from_scwrl_834353185.pdb or /var/tmp/from_scwrl_834353185_b.pdb or /var/tmp/from_scwrl_834353185_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1639929510.pdb -s /var/tmp/to_scwrl_1639929510.seq -o /var/tmp/from_scwrl_1639929510.pdb > /var/tmp/scwrl_1639929510.log Error: can't open any of /var/tmp/from_scwrl_1639929510.pdb or /var/tmp/from_scwrl_1639929510_b.pdb or /var/tmp/from_scwrl_1639929510_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_167770044.pdb -s /var/tmp/to_scwrl_167770044.seq -o /var/tmp/from_scwrl_167770044.pdb > /var/tmp/scwrl_167770044.log Error: can't open any of /var/tmp/from_scwrl_167770044.pdb or /var/tmp/from_scwrl_167770044_b.pdb or /var/tmp/from_scwrl_167770044_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 373 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_168781912.pdb -s /var/tmp/to_scwrl_168781912.seq -o /var/tmp/from_scwrl_168781912.pdb > /var/tmp/scwrl_168781912.log Error: can't open any of /var/tmp/from_scwrl_168781912.pdb or /var/tmp/from_scwrl_168781912_b.pdb or /var/tmp/from_scwrl_168781912_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_89917638.pdb -s /var/tmp/to_scwrl_89917638.seq -o /var/tmp/from_scwrl_89917638.pdb > /var/tmp/scwrl_89917638.log Error: can't open any of /var/tmp/from_scwrl_89917638.pdb or /var/tmp/from_scwrl_89917638_b.pdb or /var/tmp/from_scwrl_89917638_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 339 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_409126191.pdb -s /var/tmp/to_scwrl_409126191.seq -o /var/tmp/from_scwrl_409126191.pdb > /var/tmp/scwrl_409126191.log Error: can't open any of /var/tmp/from_scwrl_409126191.pdb or /var/tmp/from_scwrl_409126191_b.pdb or /var/tmp/from_scwrl_409126191_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 357 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_115919109.pdb -s /var/tmp/to_scwrl_115919109.seq -o /var/tmp/from_scwrl_115919109.pdb > /var/tmp/scwrl_115919109.log Error: can't open any of /var/tmp/from_scwrl_115919109.pdb or /var/tmp/from_scwrl_115919109_b.pdb or /var/tmp/from_scwrl_115919109_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 360 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1562226206.pdb -s /var/tmp/to_scwrl_1562226206.seq -o /var/tmp/from_scwrl_1562226206.pdb > /var/tmp/scwrl_1562226206.log Error: can't open any of /var/tmp/from_scwrl_1562226206.pdb or /var/tmp/from_scwrl_1562226206_b.pdb or /var/tmp/from_scwrl_1562226206_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1000644041.pdb -s /var/tmp/to_scwrl_1000644041.seq -o /var/tmp/from_scwrl_1000644041.pdb > /var/tmp/scwrl_1000644041.log Error: can't open any of /var/tmp/from_scwrl_1000644041.pdb or /var/tmp/from_scwrl_1000644041_b.pdb or /var/tmp/from_scwrl_1000644041_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 338 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1042125268.pdb -s /var/tmp/to_scwrl_1042125268.seq -o /var/tmp/from_scwrl_1042125268.pdb > /var/tmp/scwrl_1042125268.log Error: can't open any of /var/tmp/from_scwrl_1042125268.pdb or /var/tmp/from_scwrl_1042125268_b.pdb or /var/tmp/from_scwrl_1042125268_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 356 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_353535843.pdb -s /var/tmp/to_scwrl_353535843.seq -o /var/tmp/from_scwrl_353535843.pdb > /var/tmp/scwrl_353535843.log Error: can't open any of /var/tmp/from_scwrl_353535843.pdb or /var/tmp/from_scwrl_353535843_b.pdb or /var/tmp/from_scwrl_353535843_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 328 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1578104646.pdb -s /var/tmp/to_scwrl_1578104646.seq -o /var/tmp/from_scwrl_1578104646.pdb > /var/tmp/scwrl_1578104646.log Error: can't open any of /var/tmp/from_scwrl_1578104646.pdb or /var/tmp/from_scwrl_1578104646_b.pdb or /var/tmp/from_scwrl_1578104646_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_254131496.pdb -s /var/tmp/to_scwrl_254131496.seq -o /var/tmp/from_scwrl_254131496.pdb > /var/tmp/scwrl_254131496.log Error: can't open any of /var/tmp/from_scwrl_254131496.pdb or /var/tmp/from_scwrl_254131496_b.pdb or /var/tmp/from_scwrl_254131496_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 342 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_161669103.pdb -s /var/tmp/to_scwrl_161669103.seq -o /var/tmp/from_scwrl_161669103.pdb > /var/tmp/scwrl_161669103.log Error: can't open any of /var/tmp/from_scwrl_161669103.pdb or /var/tmp/from_scwrl_161669103_b.pdb or /var/tmp/from_scwrl_161669103_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1582875141.pdb -s /var/tmp/to_scwrl_1582875141.seq -o /var/tmp/from_scwrl_1582875141.pdb > /var/tmp/scwrl_1582875141.log Error: can't open any of /var/tmp/from_scwrl_1582875141.pdb or /var/tmp/from_scwrl_1582875141_b.pdb or /var/tmp/from_scwrl_1582875141_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_640759604.pdb -s /var/tmp/to_scwrl_640759604.seq -o /var/tmp/from_scwrl_640759604.pdb > /var/tmp/scwrl_640759604.log Error: can't open any of /var/tmp/from_scwrl_640759604.pdb or /var/tmp/from_scwrl_640759604_b.pdb or /var/tmp/from_scwrl_640759604_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_350871350.pdb -s /var/tmp/to_scwrl_350871350.seq -o /var/tmp/from_scwrl_350871350.pdb > /var/tmp/scwrl_350871350.log Error: can't open any of /var/tmp/from_scwrl_350871350.pdb or /var/tmp/from_scwrl_350871350_b.pdb or /var/tmp/from_scwrl_350871350_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1271843308.pdb -s /var/tmp/to_scwrl_1271843308.seq -o /var/tmp/from_scwrl_1271843308.pdb > /var/tmp/scwrl_1271843308.log Error: can't open any of /var/tmp/from_scwrl_1271843308.pdb or /var/tmp/from_scwrl_1271843308_b.pdb or /var/tmp/from_scwrl_1271843308_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_103273501.pdb -s /var/tmp/to_scwrl_103273501.seq -o /var/tmp/from_scwrl_103273501.pdb > /var/tmp/scwrl_103273501.log Error: can't open any of /var/tmp/from_scwrl_103273501.pdb or /var/tmp/from_scwrl_103273501_b.pdb or /var/tmp/from_scwrl_103273501_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_989491264.pdb -s /var/tmp/to_scwrl_989491264.seq -o /var/tmp/from_scwrl_989491264.pdb > /var/tmp/scwrl_989491264.log Error: can't open any of /var/tmp/from_scwrl_989491264.pdb or /var/tmp/from_scwrl_989491264_b.pdb or /var/tmp/from_scwrl_989491264_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_989241541.pdb -s /var/tmp/to_scwrl_989241541.seq -o /var/tmp/from_scwrl_989241541.pdb > /var/tmp/scwrl_989241541.log Error: can't open any of /var/tmp/from_scwrl_989241541.pdb or /var/tmp/from_scwrl_989241541_b.pdb or /var/tmp/from_scwrl_989241541_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1982996068.pdb -s /var/tmp/to_scwrl_1982996068.seq -o /var/tmp/from_scwrl_1982996068.pdb > /var/tmp/scwrl_1982996068.log Error: can't open any of /var/tmp/from_scwrl_1982996068.pdb or /var/tmp/from_scwrl_1982996068_b.pdb or /var/tmp/from_scwrl_1982996068_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_586281486.pdb -s /var/tmp/to_scwrl_586281486.seq -o /var/tmp/from_scwrl_586281486.pdb > /var/tmp/scwrl_586281486.log Error: can't open any of /var/tmp/from_scwrl_586281486.pdb or /var/tmp/from_scwrl_586281486_b.pdb or /var/tmp/from_scwrl_586281486_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_56946185.pdb -s /var/tmp/to_scwrl_56946185.seq -o /var/tmp/from_scwrl_56946185.pdb > /var/tmp/scwrl_56946185.log Error: can't open any of /var/tmp/from_scwrl_56946185.pdb or /var/tmp/from_scwrl_56946185_b.pdb or /var/tmp/from_scwrl_56946185_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_785850803.pdb -s /var/tmp/to_scwrl_785850803.seq -o /var/tmp/from_scwrl_785850803.pdb > /var/tmp/scwrl_785850803.log Error: can't open any of /var/tmp/from_scwrl_785850803.pdb or /var/tmp/from_scwrl_785850803_b.pdb or /var/tmp/from_scwrl_785850803_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2079530803.pdb -s /var/tmp/to_scwrl_2079530803.seq -o /var/tmp/from_scwrl_2079530803.pdb > /var/tmp/scwrl_2079530803.log Error: can't open any of /var/tmp/from_scwrl_2079530803.pdb or /var/tmp/from_scwrl_2079530803_b.pdb or /var/tmp/from_scwrl_2079530803_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_281083484.pdb -s /var/tmp/to_scwrl_281083484.seq -o /var/tmp/from_scwrl_281083484.pdb > /var/tmp/scwrl_281083484.log Error: can't open any of /var/tmp/from_scwrl_281083484.pdb or /var/tmp/from_scwrl_281083484_b.pdb or /var/tmp/from_scwrl_281083484_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 365 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_674248459.pdb -s /var/tmp/to_scwrl_674248459.seq -o /var/tmp/from_scwrl_674248459.pdb > /var/tmp/scwrl_674248459.log Error: can't open any of /var/tmp/from_scwrl_674248459.pdb or /var/tmp/from_scwrl_674248459_b.pdb or /var/tmp/from_scwrl_674248459_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1408065787.pdb -s /var/tmp/to_scwrl_1408065787.seq -o /var/tmp/from_scwrl_1408065787.pdb > /var/tmp/scwrl_1408065787.log Error: can't open any of /var/tmp/from_scwrl_1408065787.pdb or /var/tmp/from_scwrl_1408065787_b.pdb or /var/tmp/from_scwrl_1408065787_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_955389363.pdb -s /var/tmp/to_scwrl_955389363.seq -o /var/tmp/from_scwrl_955389363.pdb > /var/tmp/scwrl_955389363.log Error: can't open any of /var/tmp/from_scwrl_955389363.pdb or /var/tmp/from_scwrl_955389363_b.pdb or /var/tmp/from_scwrl_955389363_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_566654033.pdb -s /var/tmp/to_scwrl_566654033.seq -o /var/tmp/from_scwrl_566654033.pdb > /var/tmp/scwrl_566654033.log Error: can't open any of /var/tmp/from_scwrl_566654033.pdb or /var/tmp/from_scwrl_566654033_b.pdb or /var/tmp/from_scwrl_566654033_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_94935326.pdb -s /var/tmp/to_scwrl_94935326.seq -o /var/tmp/from_scwrl_94935326.pdb > /var/tmp/scwrl_94935326.log Error: can't open any of /var/tmp/from_scwrl_94935326.pdb or /var/tmp/from_scwrl_94935326_b.pdb or /var/tmp/from_scwrl_94935326_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 373 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_447835226.pdb -s /var/tmp/to_scwrl_447835226.seq -o /var/tmp/from_scwrl_447835226.pdb > /var/tmp/scwrl_447835226.log Error: can't open any of /var/tmp/from_scwrl_447835226.pdb or /var/tmp/from_scwrl_447835226_b.pdb or /var/tmp/from_scwrl_447835226_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 340 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_734424078.pdb -s /var/tmp/to_scwrl_734424078.seq -o /var/tmp/from_scwrl_734424078.pdb > /var/tmp/scwrl_734424078.log Error: can't open any of /var/tmp/from_scwrl_734424078.pdb or /var/tmp/from_scwrl_734424078_b.pdb or /var/tmp/from_scwrl_734424078_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 363 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_263717238.pdb -s /var/tmp/to_scwrl_263717238.seq -o /var/tmp/from_scwrl_263717238.pdb > /var/tmp/scwrl_263717238.log Error: can't open any of /var/tmp/from_scwrl_263717238.pdb or /var/tmp/from_scwrl_263717238_b.pdb or /var/tmp/from_scwrl_263717238_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_537752865.pdb -s /var/tmp/to_scwrl_537752865.seq -o /var/tmp/from_scwrl_537752865.pdb > /var/tmp/scwrl_537752865.log Error: can't open any of /var/tmp/from_scwrl_537752865.pdb or /var/tmp/from_scwrl_537752865_b.pdb or /var/tmp/from_scwrl_537752865_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1143550268.pdb -s /var/tmp/to_scwrl_1143550268.seq -o /var/tmp/from_scwrl_1143550268.pdb > /var/tmp/scwrl_1143550268.log Error: can't open any of /var/tmp/from_scwrl_1143550268.pdb or /var/tmp/from_scwrl_1143550268_b.pdb or /var/tmp/from_scwrl_1143550268_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_379636348.pdb -s /var/tmp/to_scwrl_379636348.seq -o /var/tmp/from_scwrl_379636348.pdb > /var/tmp/scwrl_379636348.log Error: can't open any of /var/tmp/from_scwrl_379636348.pdb or /var/tmp/from_scwrl_379636348_b.pdb or /var/tmp/from_scwrl_379636348_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 364 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2099979071.pdb -s /var/tmp/to_scwrl_2099979071.seq -o /var/tmp/from_scwrl_2099979071.pdb > /var/tmp/scwrl_2099979071.log Error: can't open any of /var/tmp/from_scwrl_2099979071.pdb or /var/tmp/from_scwrl_2099979071_b.pdb or /var/tmp/from_scwrl_2099979071_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2144194310.pdb -s /var/tmp/to_scwrl_2144194310.seq -o /var/tmp/from_scwrl_2144194310.pdb > /var/tmp/scwrl_2144194310.log Error: can't open any of /var/tmp/from_scwrl_2144194310.pdb or /var/tmp/from_scwrl_2144194310_b.pdb or /var/tmp/from_scwrl_2144194310_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1421761615.pdb -s /var/tmp/to_scwrl_1421761615.seq -o /var/tmp/from_scwrl_1421761615.pdb > /var/tmp/scwrl_1421761615.log Error: can't open any of /var/tmp/from_scwrl_1421761615.pdb or /var/tmp/from_scwrl_1421761615_b.pdb or /var/tmp/from_scwrl_1421761615_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 326 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_306031267.pdb -s /var/tmp/to_scwrl_306031267.seq -o /var/tmp/from_scwrl_306031267.pdb > /var/tmp/scwrl_306031267.log Error: can't open any of /var/tmp/from_scwrl_306031267.pdb or /var/tmp/from_scwrl_306031267_b.pdb or /var/tmp/from_scwrl_306031267_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1574815309.pdb -s /var/tmp/to_scwrl_1574815309.seq -o /var/tmp/from_scwrl_1574815309.pdb > /var/tmp/scwrl_1574815309.log Error: can't open any of /var/tmp/from_scwrl_1574815309.pdb or /var/tmp/from_scwrl_1574815309_b.pdb or /var/tmp/from_scwrl_1574815309_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 356 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1675893112.pdb -s /var/tmp/to_scwrl_1675893112.seq -o /var/tmp/from_scwrl_1675893112.pdb > /var/tmp/scwrl_1675893112.log Error: can't open any of /var/tmp/from_scwrl_1675893112.pdb or /var/tmp/from_scwrl_1675893112_b.pdb or /var/tmp/from_scwrl_1675893112_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 363 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_467700370.pdb -s /var/tmp/to_scwrl_467700370.seq -o /var/tmp/from_scwrl_467700370.pdb > /var/tmp/scwrl_467700370.log Error: can't open any of /var/tmp/from_scwrl_467700370.pdb or /var/tmp/from_scwrl_467700370_b.pdb or /var/tmp/from_scwrl_467700370_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 356 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1010206804.pdb -s /var/tmp/to_scwrl_1010206804.seq -o /var/tmp/from_scwrl_1010206804.pdb > /var/tmp/scwrl_1010206804.log Error: can't open any of /var/tmp/from_scwrl_1010206804.pdb or /var/tmp/from_scwrl_1010206804_b.pdb or /var/tmp/from_scwrl_1010206804_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_169169069.pdb -s /var/tmp/to_scwrl_169169069.seq -o /var/tmp/from_scwrl_169169069.pdb > /var/tmp/scwrl_169169069.log Error: can't open any of /var/tmp/from_scwrl_169169069.pdb or /var/tmp/from_scwrl_169169069_b.pdb or /var/tmp/from_scwrl_169169069_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_818571721.pdb -s /var/tmp/to_scwrl_818571721.seq -o /var/tmp/from_scwrl_818571721.pdb > /var/tmp/scwrl_818571721.log Error: can't open any of /var/tmp/from_scwrl_818571721.pdb or /var/tmp/from_scwrl_818571721_b.pdb or /var/tmp/from_scwrl_818571721_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_134566466.pdb -s /var/tmp/to_scwrl_134566466.seq -o /var/tmp/from_scwrl_134566466.pdb > /var/tmp/scwrl_134566466.log Error: can't open any of /var/tmp/from_scwrl_134566466.pdb or /var/tmp/from_scwrl_134566466_b.pdb or /var/tmp/from_scwrl_134566466_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_272442571.pdb -s /var/tmp/to_scwrl_272442571.seq -o /var/tmp/from_scwrl_272442571.pdb > /var/tmp/scwrl_272442571.log Error: can't open any of /var/tmp/from_scwrl_272442571.pdb or /var/tmp/from_scwrl_272442571_b.pdb or /var/tmp/from_scwrl_272442571_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1808062984.pdb -s /var/tmp/to_scwrl_1808062984.seq -o /var/tmp/from_scwrl_1808062984.pdb > /var/tmp/scwrl_1808062984.log Error: can't open any of /var/tmp/from_scwrl_1808062984.pdb or /var/tmp/from_scwrl_1808062984_b.pdb or /var/tmp/from_scwrl_1808062984_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1123808006.pdb -s /var/tmp/to_scwrl_1123808006.seq -o /var/tmp/from_scwrl_1123808006.pdb > /var/tmp/scwrl_1123808006.log Error: can't open any of /var/tmp/from_scwrl_1123808006.pdb or /var/tmp/from_scwrl_1123808006_b.pdb or /var/tmp/from_scwrl_1123808006_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_107954992.pdb -s /var/tmp/to_scwrl_107954992.seq -o /var/tmp/from_scwrl_107954992.pdb > /var/tmp/scwrl_107954992.log Error: can't open any of /var/tmp/from_scwrl_107954992.pdb or /var/tmp/from_scwrl_107954992_b.pdb or /var/tmp/from_scwrl_107954992_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_246860823.pdb -s /var/tmp/to_scwrl_246860823.seq -o /var/tmp/from_scwrl_246860823.pdb > /var/tmp/scwrl_246860823.log Error: can't open any of /var/tmp/from_scwrl_246860823.pdb or /var/tmp/from_scwrl_246860823_b.pdb or /var/tmp/from_scwrl_246860823_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1180754191.pdb -s /var/tmp/to_scwrl_1180754191.seq -o /var/tmp/from_scwrl_1180754191.pdb > /var/tmp/scwrl_1180754191.log Error: can't open any of /var/tmp/from_scwrl_1180754191.pdb or /var/tmp/from_scwrl_1180754191_b.pdb or /var/tmp/from_scwrl_1180754191_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_893805795.pdb -s /var/tmp/to_scwrl_893805795.seq -o /var/tmp/from_scwrl_893805795.pdb > /var/tmp/scwrl_893805795.log Error: can't open any of /var/tmp/from_scwrl_893805795.pdb or /var/tmp/from_scwrl_893805795_b.pdb or /var/tmp/from_scwrl_893805795_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_178907980.pdb -s /var/tmp/to_scwrl_178907980.seq -o /var/tmp/from_scwrl_178907980.pdb > /var/tmp/scwrl_178907980.log Error: can't open any of /var/tmp/from_scwrl_178907980.pdb or /var/tmp/from_scwrl_178907980_b.pdb or /var/tmp/from_scwrl_178907980_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1461837675.pdb -s /var/tmp/to_scwrl_1461837675.seq -o /var/tmp/from_scwrl_1461837675.pdb > /var/tmp/scwrl_1461837675.log Error: can't open any of /var/tmp/from_scwrl_1461837675.pdb or /var/tmp/from_scwrl_1461837675_b.pdb or /var/tmp/from_scwrl_1461837675_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 362 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1568054254.pdb -s /var/tmp/to_scwrl_1568054254.seq -o /var/tmp/from_scwrl_1568054254.pdb > /var/tmp/scwrl_1568054254.log Error: can't open any of /var/tmp/from_scwrl_1568054254.pdb or /var/tmp/from_scwrl_1568054254_b.pdb or /var/tmp/from_scwrl_1568054254_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1586973767.pdb -s /var/tmp/to_scwrl_1586973767.seq -o /var/tmp/from_scwrl_1586973767.pdb > /var/tmp/scwrl_1586973767.log Error: can't open any of /var/tmp/from_scwrl_1586973767.pdb or /var/tmp/from_scwrl_1586973767_b.pdb or /var/tmp/from_scwrl_1586973767_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 343 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_269743391.pdb -s /var/tmp/to_scwrl_269743391.seq -o /var/tmp/from_scwrl_269743391.pdb > /var/tmp/scwrl_269743391.log Error: can't open any of /var/tmp/from_scwrl_269743391.pdb or /var/tmp/from_scwrl_269743391_b.pdb or /var/tmp/from_scwrl_269743391_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_2134708287.pdb -s /var/tmp/to_scwrl_2134708287.seq -o /var/tmp/from_scwrl_2134708287.pdb > /var/tmp/scwrl_2134708287.log Error: can't open any of /var/tmp/from_scwrl_2134708287.pdb or /var/tmp/from_scwrl_2134708287_b.pdb or /var/tmp/from_scwrl_2134708287_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1681909093.pdb -s /var/tmp/to_scwrl_1681909093.seq -o /var/tmp/from_scwrl_1681909093.pdb > /var/tmp/scwrl_1681909093.log Error: can't open any of /var/tmp/from_scwrl_1681909093.pdb or /var/tmp/from_scwrl_1681909093_b.pdb or /var/tmp/from_scwrl_1681909093_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_717578617.pdb -s /var/tmp/to_scwrl_717578617.seq -o /var/tmp/from_scwrl_717578617.pdb > /var/tmp/scwrl_717578617.log Error: can't open any of /var/tmp/from_scwrl_717578617.pdb or /var/tmp/from_scwrl_717578617_b.pdb or /var/tmp/from_scwrl_717578617_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_721648718.pdb -s /var/tmp/to_scwrl_721648718.seq -o /var/tmp/from_scwrl_721648718.pdb > /var/tmp/scwrl_721648718.log Error: can't open any of /var/tmp/from_scwrl_721648718.pdb or /var/tmp/from_scwrl_721648718_b.pdb or /var/tmp/from_scwrl_721648718_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1945626332.pdb -s /var/tmp/to_scwrl_1945626332.seq -o /var/tmp/from_scwrl_1945626332.pdb > /var/tmp/scwrl_1945626332.log Error: can't open any of /var/tmp/from_scwrl_1945626332.pdb or /var/tmp/from_scwrl_1945626332_b.pdb or /var/tmp/from_scwrl_1945626332_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1255331481.pdb -s /var/tmp/to_scwrl_1255331481.seq -o /var/tmp/from_scwrl_1255331481.pdb > /var/tmp/scwrl_1255331481.log Error: can't open any of /var/tmp/from_scwrl_1255331481.pdb or /var/tmp/from_scwrl_1255331481_b.pdb or /var/tmp/from_scwrl_1255331481_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1865198987.pdb -s /var/tmp/to_scwrl_1865198987.seq -o /var/tmp/from_scwrl_1865198987.pdb > /var/tmp/scwrl_1865198987.log Error: can't open any of /var/tmp/from_scwrl_1865198987.pdb or /var/tmp/from_scwrl_1865198987_b.pdb or /var/tmp/from_scwrl_1865198987_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_177779033.pdb -s /var/tmp/to_scwrl_177779033.seq -o /var/tmp/from_scwrl_177779033.pdb > /var/tmp/scwrl_177779033.log Error: can't open any of /var/tmp/from_scwrl_177779033.pdb or /var/tmp/from_scwrl_177779033_b.pdb or /var/tmp/from_scwrl_177779033_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1207826905.pdb -s /var/tmp/to_scwrl_1207826905.seq -o /var/tmp/from_scwrl_1207826905.pdb > /var/tmp/scwrl_1207826905.log Error: can't open any of /var/tmp/from_scwrl_1207826905.pdb or /var/tmp/from_scwrl_1207826905_b.pdb or /var/tmp/from_scwrl_1207826905_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1861909650.pdb -s /var/tmp/to_scwrl_1861909650.seq -o /var/tmp/from_scwrl_1861909650.pdb > /var/tmp/scwrl_1861909650.log Error: can't open any of /var/tmp/from_scwrl_1861909650.pdb or /var/tmp/from_scwrl_1861909650_b.pdb or /var/tmp/from_scwrl_1861909650_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1599540648.pdb -s /var/tmp/to_scwrl_1599540648.seq -o /var/tmp/from_scwrl_1599540648.pdb > /var/tmp/scwrl_1599540648.log Error: can't open any of /var/tmp/from_scwrl_1599540648.pdb or /var/tmp/from_scwrl_1599540648_b.pdb or /var/tmp/from_scwrl_1599540648_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1513858173.pdb -s /var/tmp/to_scwrl_1513858173.seq -o /var/tmp/from_scwrl_1513858173.pdb > /var/tmp/scwrl_1513858173.log Error: can't open any of /var/tmp/from_scwrl_1513858173.pdb or /var/tmp/from_scwrl_1513858173_b.pdb or /var/tmp/from_scwrl_1513858173_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1289241312.pdb -s /var/tmp/to_scwrl_1289241312.seq -o /var/tmp/from_scwrl_1289241312.pdb > /var/tmp/scwrl_1289241312.log Error: can't open any of /var/tmp/from_scwrl_1289241312.pdb or /var/tmp/from_scwrl_1289241312_b.pdb or /var/tmp/from_scwrl_1289241312_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1127950113.pdb -s /var/tmp/to_scwrl_1127950113.seq -o /var/tmp/from_scwrl_1127950113.pdb > /var/tmp/scwrl_1127950113.log Error: can't open any of /var/tmp/from_scwrl_1127950113.pdb or /var/tmp/from_scwrl_1127950113_b.pdb or /var/tmp/from_scwrl_1127950113_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 351 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1981558543.pdb -s /var/tmp/to_scwrl_1981558543.seq -o /var/tmp/from_scwrl_1981558543.pdb > /var/tmp/scwrl_1981558543.log Error: can't open any of /var/tmp/from_scwrl_1981558543.pdb or /var/tmp/from_scwrl_1981558543_b.pdb or /var/tmp/from_scwrl_1981558543_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 373 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_151964469.pdb -s /var/tmp/to_scwrl_151964469.seq -o /var/tmp/from_scwrl_151964469.pdb > /var/tmp/scwrl_151964469.log Error: can't open any of /var/tmp/from_scwrl_151964469.pdb or /var/tmp/from_scwrl_151964469_b.pdb or /var/tmp/from_scwrl_151964469_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 371 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1297119183.pdb -s /var/tmp/to_scwrl_1297119183.seq -o /var/tmp/from_scwrl_1297119183.pdb > /var/tmp/scwrl_1297119183.log Error: can't open any of /var/tmp/from_scwrl_1297119183.pdb or /var/tmp/from_scwrl_1297119183_b.pdb or /var/tmp/from_scwrl_1297119183_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_652646617.pdb -s /var/tmp/to_scwrl_652646617.seq -o /var/tmp/from_scwrl_652646617.pdb > /var/tmp/scwrl_652646617.log Error: can't open any of /var/tmp/from_scwrl_652646617.pdb or /var/tmp/from_scwrl_652646617_b.pdb or /var/tmp/from_scwrl_652646617_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_286530935.pdb -s /var/tmp/to_scwrl_286530935.seq -o /var/tmp/from_scwrl_286530935.pdb > /var/tmp/scwrl_286530935.log Error: can't open any of /var/tmp/from_scwrl_286530935.pdb or /var/tmp/from_scwrl_286530935_b.pdb or /var/tmp/from_scwrl_286530935_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 359 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1569561754.pdb -s /var/tmp/to_scwrl_1569561754.seq -o /var/tmp/from_scwrl_1569561754.pdb > /var/tmp/scwrl_1569561754.log Error: can't open any of /var/tmp/from_scwrl_1569561754.pdb or /var/tmp/from_scwrl_1569561754_b.pdb or /var/tmp/from_scwrl_1569561754_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_313225955.pdb -s /var/tmp/to_scwrl_313225955.seq -o /var/tmp/from_scwrl_313225955.pdb > /var/tmp/scwrl_313225955.log Error: can't open any of /var/tmp/from_scwrl_313225955.pdb or /var/tmp/from_scwrl_313225955_b.pdb or /var/tmp/from_scwrl_313225955_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1410338941.pdb -s /var/tmp/to_scwrl_1410338941.seq -o /var/tmp/from_scwrl_1410338941.pdb > /var/tmp/scwrl_1410338941.log Error: can't open any of /var/tmp/from_scwrl_1410338941.pdb or /var/tmp/from_scwrl_1410338941_b.pdb or /var/tmp/from_scwrl_1410338941_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 368 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1677516746.pdb -s /var/tmp/to_scwrl_1677516746.seq -o /var/tmp/from_scwrl_1677516746.pdb > /var/tmp/scwrl_1677516746.log Error: can't open any of /var/tmp/from_scwrl_1677516746.pdb or /var/tmp/from_scwrl_1677516746_b.pdb or /var/tmp/from_scwrl_1677516746_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 306 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_560086778.pdb -s /var/tmp/to_scwrl_560086778.seq -o /var/tmp/from_scwrl_560086778.pdb > /var/tmp/scwrl_560086778.log Error: can't open any of /var/tmp/from_scwrl_560086778.pdb or /var/tmp/from_scwrl_560086778_b.pdb or /var/tmp/from_scwrl_560086778_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_443609486.pdb -s /var/tmp/to_scwrl_443609486.seq -o /var/tmp/from_scwrl_443609486.pdb > /var/tmp/scwrl_443609486.log Error: can't open any of /var/tmp/from_scwrl_443609486.pdb or /var/tmp/from_scwrl_443609486_b.pdb or /var/tmp/from_scwrl_443609486_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 361 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_423838894.pdb -s /var/tmp/to_scwrl_423838894.seq -o /var/tmp/from_scwrl_423838894.pdb > /var/tmp/scwrl_423838894.log Error: can't open any of /var/tmp/from_scwrl_423838894.pdb or /var/tmp/from_scwrl_423838894_b.pdb or /var/tmp/from_scwrl_423838894_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_738994758.pdb -s /var/tmp/to_scwrl_738994758.seq -o /var/tmp/from_scwrl_738994758.pdb > /var/tmp/scwrl_738994758.log Error: can't open any of /var/tmp/from_scwrl_738994758.pdb or /var/tmp/from_scwrl_738994758_b.pdb or /var/tmp/from_scwrl_738994758_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1905447161.pdb -s /var/tmp/to_scwrl_1905447161.seq -o /var/tmp/from_scwrl_1905447161.pdb > /var/tmp/scwrl_1905447161.log Error: can't open any of /var/tmp/from_scwrl_1905447161.pdb or /var/tmp/from_scwrl_1905447161_b.pdb or /var/tmp/from_scwrl_1905447161_a.pdb Error: no new SCWRL conformation added # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1991893148.pdb -s /var/tmp/to_scwrl_1991893148.seq -o /var/tmp/from_scwrl_1991893148.pdb > /var/tmp/scwrl_1991893148.log Error: can't open any of /var/tmp/from_scwrl_1991893148.pdb or /var/tmp/from_scwrl_1991893148_b.pdb or /var/tmp/from_scwrl_1991893148_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_178484879.pdb -s /var/tmp/to_scwrl_178484879.seq -o /var/tmp/from_scwrl_178484879.pdb > /var/tmp/scwrl_178484879.log Error: can't open any of /var/tmp/from_scwrl_178484879.pdb or /var/tmp/from_scwrl_178484879_b.pdb or /var/tmp/from_scwrl_178484879_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_27706905.pdb -s /var/tmp/to_scwrl_27706905.seq -o /var/tmp/from_scwrl_27706905.pdb > /var/tmp/scwrl_27706905.log Error: can't open any of /var/tmp/from_scwrl_27706905.pdb or /var/tmp/from_scwrl_27706905_b.pdb or /var/tmp/from_scwrl_27706905_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1979117789.pdb -s /var/tmp/to_scwrl_1979117789.seq -o /var/tmp/from_scwrl_1979117789.pdb > /var/tmp/scwrl_1979117789.log Error: can't open any of /var/tmp/from_scwrl_1979117789.pdb or /var/tmp/from_scwrl_1979117789_b.pdb or /var/tmp/from_scwrl_1979117789_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0333 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_1860393972.pdb -s /var/tmp/to_scwrl_1860393972.seq -o /var/tmp/from_scwrl_1860393972.pdb > /var/tmp/scwrl_1860393972.log Error: can't open any of /var/tmp/from_scwrl_1860393972.pdb or /var/tmp/from_scwrl_1860393972_b.pdb or /var/tmp/from_scwrl_1860393972_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 375 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 339 ; scwrl -i /var/tmp/to_scwrl_745285523.pdb -s /var/tmp/to_scwrl_745285523.seq -o /var/tmp/from_scwrl_745285523.pdb > /var/tmp/scwrl_745285523.log Error: can't open any of /var/tmp/from_scwrl_745285523.pdb or /var/tmp/from_scwrl_745285523_b.pdb or /var/tmp/from_scwrl_745285523_a.pdb Error: no new SCWRL conformation added # naming current conformation shub_TS1-scwrl # command:CPU_time= 84.8641 sec, elapsed time= 97.4879 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.predburial.rdb # command:# CostConform shub_TS1-scwrl costs 362.218 real_cost = 375.088 nFOLD_TS5-scwrl costs 14545.2 real_cost = 576.919 nFOLD_TS4-scwrl costs 29242.9 real_cost = 555.847 nFOLD_TS3-scwrl costs 8711.55 real_cost = 590.936 nFOLD_TS2-scwrl costs 10716.9 real_cost = 583.28 nFOLD_TS1-scwrl costs 29642 real_cost = 585.34 mGen-3D_TS1-scwrl costs 29543.6 real_cost = 584.557 keasar-server_TS5-scwrl costs 294.566 real_cost = 370.759 keasar-server_TS4-scwrl costs 299.896 real_cost = 384.012 keasar-server_TS3-scwrl costs 292.842 real_cost = 380.301 keasar-server_TS2-scwrl costs 291.664 real_cost = 377.337 keasar-server_TS1-scwrl costs 297.765 real_cost = 371.633 karypis.srv_TS5-scwrl costs 397.713 real_cost = 417.41 karypis.srv_TS4-scwrl costs 356.585 real_cost = 393.55 karypis.srv_TS3-scwrl costs 325.156 real_cost = 359.407 karypis.srv_TS2-scwrl costs 299.084 real_cost = 367.017 karypis.srv_TS1-scwrl costs 297.397 real_cost = 372.882 karypis.srv.2_TS5-scwrl costs 323.731 real_cost = 388.551 karypis.srv.2_TS4-scwrl costs 302.226 real_cost = 371.775 karypis.srv.2_TS3-scwrl costs 325.083 real_cost = 371.49 karypis.srv.2_TS2-scwrl costs 314.99 real_cost = 367.814 karypis.srv.2_TS1-scwrl costs 280.36 real_cost = 356.011 gtg_AL5-scwrl costs 66489.6 real_cost = 698.137 gtg_AL4-scwrl costs 168898 real_cost = 691.394 gtg_AL3-scwrl costs 60502.4 real_cost = 683.513 gtg_AL2-scwrl costs 79923.4 real_cost = 685.859 gtg_AL1-scwrl costs 157476 real_cost = 694.388 forecast-s_AL5-scwrl costs 53138.5 real_cost = 668.872 forecast-s_AL4-scwrl costs 60409.7 real_cost = 740.477 forecast-s_AL3-scwrl costs 182951 real_cost = 682.527 forecast-s_AL2-scwrl costs 50877.3 real_cost = 670.418 forecast-s_AL1-scwrl costs 168339 real_cost = 661.403 beautshotbase_TS1-scwrl costs 321.132 real_cost = 368.313 beautshot_TS1-scwrl costs 369.212 real_cost = 378.873 Zhang-Server_TS5-scwrl costs 301.899 real_cost = 345.8 Zhang-Server_TS4-scwrl costs 301.807 real_cost = 353.956 Zhang-Server_TS3-scwrl costs 293.866 real_cost = 349.876 Zhang-Server_TS2-scwrl costs 289.844 real_cost = 351.758 Zhang-Server_TS1-scwrl costs 295.556 real_cost = 350.168 UNI-EID_sfst_AL4-scwrl costs 63188.6 real_cost = 661.172 UNI-EID_sfst_AL3-scwrl costs 48236.4 real_cost = 663.566 UNI-EID_sfst_AL2-scwrl costs 157323 real_cost = 652.064 UNI-EID_sfst_AL1-scwrl costs 162716 real_cost = 664.143 UNI-EID_expm_TS1-scwrl costs 29212.9 real_cost = 563.25 UNI-EID_bnmx_TS4-scwrl costs 63193.8 real_cost = 655.346 UNI-EID_bnmx_TS3-scwrl costs 46780.6 real_cost = 670.535 UNI-EID_bnmx_TS2-scwrl costs 156944 real_cost = 653.938 UNI-EID_bnmx_TS1-scwrl costs 166504 real_cost = 662.219 SPARKS2_TS5-scwrl costs 314.855 real_cost = 369.845 SPARKS2_TS4-scwrl costs 307.764 real_cost = 351.802 SPARKS2_TS3-scwrl costs 290.819 real_cost = 369.395 SPARKS2_TS2-scwrl costs 302.773 real_cost = 365.407 SPARKS2_TS1-scwrl costs 302.423 real_cost = 360.956 SP4_TS5-scwrl costs 315.177 real_cost = 373.194 SP4_TS4-scwrl costs 298.735 real_cost = 354.503 SP4_TS3-scwrl costs 294.488 real_cost = 358.757 SP4_TS2-scwrl costs 297.657 real_cost = 352.324 SP4_TS1-scwrl costs 296.907 real_cost = 356.409 SP3_TS5-scwrl costs 321.262 real_cost = 377.956 SP3_TS4-scwrl costs 304.817 real_cost = 352.268 SP3_TS3-scwrl costs 293.928 real_cost = 367.136 SP3_TS2-scwrl costs 296.916 real_cost = 347.707 SP3_TS1-scwrl costs 298.754 real_cost = 361.042 SAM_T06_server_TS5-scwrl costs 771.306 real_cost = 473.27 SAM_T06_server_TS4-scwrl costs 622.453 real_cost = 444.027 SAM_T06_server_TS3-scwrl costs 636.314 real_cost = 440.691 SAM_T06_server_TS2-scwrl costs 637.601 real_cost = 451.341 SAM_T06_server_TS1-scwrl costs 273.053 real_cost = 371.662 SAM-T99_AL5-scwrl costs 65207 real_cost = 661.934 SAM-T99_AL4-scwrl costs 62897 real_cost = 664.954 SAM-T99_AL3-scwrl costs 62670.1 real_cost = 666.96 SAM-T99_AL2-scwrl costs 84858 real_cost = 657.72 SAM-T99_AL1-scwrl costs 168763 real_cost = 677.235 SAM-T02_AL5-scwrl costs 290297 real_cost = 663.798 SAM-T02_AL4-scwrl costs 68666.6 real_cost = 703.772 SAM-T02_AL3-scwrl costs 47997.8 real_cost = 667.318 SAM-T02_AL2-scwrl costs 50947.2 real_cost = 694.123 SAM-T02_AL1-scwrl costs 169507 real_cost = 676.811 ROKKY_TS4-scwrl costs 309.79 real_cost = 367.313 ROKKY_TS3-scwrl costs 307.3 real_cost = 378.762 ROKKY_TS2-scwrl costs 299.702 real_cost = 364.78 ROKKY_TS1-scwrl costs 339.436 real_cost = 365.457 ROBETTA_TS5-scwrl costs 263.239 real_cost = 365.16 ROBETTA_TS4-scwrl costs 269.595 real_cost = 357.463 ROBETTA_TS3-scwrl costs 266.486 real_cost = 358.625 ROBETTA_TS2-scwrl costs 278.256 real_cost = 349.511 ROBETTA_TS1-scwrl costs 277.486 real_cost = 358.664 RAPTOR_TS5-scwrl costs 299.236 real_cost = 376.12 RAPTOR_TS4-scwrl costs 292.003 real_cost = 361.991 RAPTOR_TS3-scwrl costs 305.744 real_cost = 357.618 RAPTOR_TS2-scwrl costs 314.598 real_cost = 366.717 RAPTOR_TS1-scwrl costs 296.336 real_cost = 369.742 RAPTORESS_TS5-scwrl costs 289.246 real_cost = 383.925 RAPTORESS_TS4-scwrl costs 283.992 real_cost = 364.905 RAPTORESS_TS3-scwrl costs 297.093 real_cost = 359.253 RAPTORESS_TS2-scwrl costs 305.274 real_cost = 368.327 RAPTORESS_TS1-scwrl costs 291.503 real_cost = 377.447 RAPTOR-ACE_TS5-scwrl costs 282.355 real_cost = 363.941 RAPTOR-ACE_TS4-scwrl costs 300.953 real_cost = 364.967 RAPTOR-ACE_TS3-scwrl costs 297.128 real_cost = 365.69 RAPTOR-ACE_TS2-scwrl costs 293.228 real_cost = 367.563 RAPTOR-ACE_TS1-scwrl costs 298.754 real_cost = 361.042 Pmodeller6_TS5-scwrl costs 263.239 real_cost = 365.16 Pmodeller6_TS4-scwrl costs 266.486 real_cost = 358.625 Pmodeller6_TS3-scwrl costs 427.025 real_cost = 392.595 Pmodeller6_TS2-scwrl costs 427.025 real_cost = 392.595 Pmodeller6_TS1-scwrl costs 427.025 real_cost = 392.595 Phyre-2_TS5-scwrl costs 322.317 real_cost = 360.376 Phyre-2_TS4-scwrl costs 328.175 real_cost = 372.782 Phyre-2_TS3-scwrl costs 324.401 real_cost = 359.241 Phyre-2_TS2-scwrl costs 330.599 real_cost = 363.801 Phyre-2_TS1-scwrl costs 335.722 real_cost = 365.474 Phyre-1_TS1-scwrl costs 516.767 real_cost = 411.96 Pcons6_TS5-scwrl costs 302.312 real_cost = 356.675 Pcons6_TS4-scwrl costs 290.819 real_cost = 359.896 Pcons6_TS3-scwrl costs 292.967 real_cost = 355.203 Pcons6_TS2-scwrl costs 427.025 real_cost = 392.595 Pcons6_TS1-scwrl costs 298.051 real_cost = 350.961 PROTINFO_TS5-scwrl costs 277.834 real_cost = 362.029 PROTINFO_TS4-scwrl costs 304.812 real_cost = 370.559 PROTINFO_TS3-scwrl costs 294.898 real_cost = 366.293 PROTINFO_TS2-scwrl costs 305.087 real_cost = 367.332 PROTINFO_TS1-scwrl costs 284.518 real_cost = 370.246 PROTINFO-AB_TS5-scwrl costs 307.431 real_cost = 377.044 PROTINFO-AB_TS4-scwrl costs 305.025 real_cost = 369.94 PROTINFO-AB_TS3-scwrl costs 302.26 real_cost = 373.946 PROTINFO-AB_TS2-scwrl costs 305.025 real_cost = 369.94 PROTINFO-AB_TS1-scwrl costs 296.292 real_cost = 376.091 POMYSL_TS5-scwrl costs 1041.36 real_cost = 549.743 POMYSL_TS4-scwrl costs 1039.11 real_cost = 561.093 POMYSL_TS3-scwrl costs 1021.53 real_cost = 556.977 POMYSL_TS2-scwrl costs 1055.08 real_cost = 544.431 POMYSL_TS1-scwrl costs 1032.83 real_cost = 554.805 NN_PUT_lab_TS1-scwrl costs 29642 real_cost = 585.34 MetaTasser_TS5-scwrl costs 409.183 real_cost = 361.565 MetaTasser_TS4-scwrl costs 402.716 real_cost = 347.433 MetaTasser_TS3-scwrl costs 420.689 real_cost = 347.583 MetaTasser_TS2-scwrl costs 405.473 real_cost = 354.662 MetaTasser_TS1-scwrl costs 410.634 real_cost = 345.456 Ma-OPUS-server_TS5-scwrl costs 319.639 real_cost = 392.37 Ma-OPUS-server_TS4-scwrl costs 305.832 real_cost = 367.99 Ma-OPUS-server_TS3-scwrl costs 299.967 real_cost = 356.364 Ma-OPUS-server_TS2-scwrl costs 307.455 real_cost = 358.413 Ma-OPUS-server_TS1-scwrl costs 290.75 real_cost = 359.171 Ma-OPUS-server2_TS5-scwrl costs 343.966 real_cost = 385.324 Ma-OPUS-server2_TS4-scwrl costs 319.171 real_cost = 395.158 Ma-OPUS-server2_TS3-scwrl costs 305.832 real_cost = 367.99 Ma-OPUS-server2_TS2-scwrl costs 308.02 real_cost = 351.239 Ma-OPUS-server2_TS1-scwrl costs 298.022 real_cost = 359.881 LOOPP_TS5-scwrl costs 308.778 real_cost = 380.046 LOOPP_TS4-scwrl costs 303.331 real_cost = 371.552 LOOPP_TS3-scwrl costs 310.547 real_cost = 363.745 LOOPP_TS2-scwrl costs 309.929 real_cost = 366.573 LOOPP_TS1-scwrl costs 320.137 real_cost = 363.183 Huber-Torda-Server_TS5-scwrl costs 14173.4 real_cost = 573.704 Huber-Torda-Server_TS4-scwrl costs 25626.8 real_cost = 613.167 Huber-Torda-Server_TS3-scwrl costs 45010 real_cost = 609.967 Huber-Torda-Server_TS2-scwrl costs 7867.02 real_cost = 622.023 Huber-Torda-Server_TS1-scwrl costs 25135.4 real_cost = 621.661 HHpred3_TS1-scwrl costs 293.263 real_cost = 360.191 HHpred2_TS1-scwrl costs 288.005 real_cost = 362.276 HHpred1_TS1-scwrl costs 291.727 real_cost = 364.641 FUNCTION_TS5-scwrl costs 320.997 real_cost = 363.722 FUNCTION_TS4-scwrl costs 327.501 real_cost = 365.916 FUNCTION_TS3-scwrl costs 317.402 real_cost = 363.729 FUNCTION_TS2-scwrl costs 317.579 real_cost = 365.07 FUNCTION_TS1-scwrl costs 325.616 real_cost = 359.793 FUGUE_AL5-scwrl costs 134762 real_cost = 676.705 FUGUE_AL4-scwrl costs 47634.5 real_cost = 656.075 FUGUE_AL3-scwrl costs 84325.3 real_cost = 636.308 FUGUE_AL2-scwrl costs 161295 real_cost = 675.403 FUGUE_AL1-scwrl costs 181913 real_cost = 648.357 FUGMOD_TS5-scwrl costs 517.5 real_cost = 421.476 FUGMOD_TS4-scwrl costs 305.207 real_cost = 359.866 FUGMOD_TS3-scwrl costs 291.575 real_cost = 370.219 FUGMOD_TS2-scwrl costs 298.434 real_cost = 355.623 FUGMOD_TS1-scwrl costs 294.651 real_cost = 370.057 FPSOLVER-SERVER_TS5-scwrl costs 352.849 real_cost = 400.025 FPSOLVER-SERVER_TS4-scwrl costs 352.751 real_cost = 383.479 FPSOLVER-SERVER_TS3-scwrl costs 349.465 real_cost = 379.317 FPSOLVER-SERVER_TS2-scwrl costs 347.865 real_cost = 404.846 FPSOLVER-SERVER_TS1-scwrl costs 353.13 real_cost = 387.686 FORTE2_AL5-scwrl costs 55761.2 real_cost = 648.965 FORTE2_AL4-scwrl costs 44864.5 real_cost = 675.24 FORTE2_AL3-scwrl costs 82824.6 real_cost = 723.123 FORTE2_AL2-scwrl costs 189070 real_cost = 670.418 FORTE2_AL1-scwrl costs 159521 real_cost = 663.594 FORTE1_AL5-scwrl costs 56830.6 real_cost = 654.167 FORTE1_AL4-scwrl costs 83851.1 real_cost = 714.269 FORTE1_AL3-scwrl costs 52709.4 real_cost = 678.071 FORTE1_AL2-scwrl costs 189250 real_cost = 674.288 FORTE1_AL1-scwrl costs 162538 real_cost = 655.481 FOLDpro_TS5-scwrl costs 301.808 real_cost = 371.067 FOLDpro_TS4-scwrl costs 301.364 real_cost = 363.309 FOLDpro_TS3-scwrl costs 301.569 real_cost = 369.797 FOLDpro_TS2-scwrl costs 320.62 real_cost = 370.124 FOLDpro_TS1-scwrl costs 328.554 real_cost = 366.014 FAMS_TS5-scwrl costs 334.024 real_cost = 372.684 FAMS_TS4-scwrl costs 321.327 real_cost = 378.856 FAMS_TS3-scwrl costs 321.327 real_cost = 378.856 FAMS_TS2-scwrl costs 313.727 real_cost = 360.314 FAMS_TS1-scwrl costs 323.714 real_cost = 357.716 FAMSD_TS5-scwrl costs 333.237 real_cost = 372.755 FAMSD_TS4-scwrl costs 373.048 real_cost = 384.333 FAMSD_TS3-scwrl costs 329.026 real_cost = 370.7 FAMSD_TS2-scwrl costs 334.024 real_cost = 372.684 FAMSD_TS1-scwrl costs 321.327 real_cost = 378.856 Distill_TS5-scwrl costs 3705.28 real_cost = 801.682 Distill_TS4-scwrl costs 3708.37 real_cost = 787.78 Distill_TS3-scwrl costs 3704.72 real_cost = 797.247 Distill_TS2-scwrl costs 3701.77 real_cost = 787.769 Distill_TS1-scwrl costs 3706.35 real_cost = 789.028 CaspIta-FOX_TS5-scwrl costs 468.939 real_cost = 389.961 CaspIta-FOX_TS4-scwrl costs 521.41 real_cost = 403.381 CaspIta-FOX_TS3-scwrl costs 422.462 real_cost = 379.45 CaspIta-FOX_TS2-scwrl costs 474.488 real_cost = 398.988 CaspIta-FOX_TS1-scwrl costs 477.834 real_cost = 408.825 CPHmodels_TS1-scwrl costs 612.655 real_cost = 448.789 CIRCLE_TS5-scwrl costs 321.327 real_cost = 378.856 CIRCLE_TS4-scwrl costs 325.854 real_cost = 367.164 CIRCLE_TS3-scwrl costs 322.596 real_cost = 360.264 CIRCLE_TS2-scwrl costs 313.727 real_cost = 360.314 CIRCLE_TS1-scwrl costs 322.074 real_cost = 363.403 Bilab-ENABLE_TS5-scwrl costs 289.529 real_cost = 357.609 Bilab-ENABLE_TS4-scwrl costs 292.165 real_cost = 367.06 Bilab-ENABLE_TS3-scwrl costs 302.461 real_cost = 365.793 Bilab-ENABLE_TS2-scwrl costs 290.558 real_cost = 366.668 Bilab-ENABLE_TS1-scwrl costs 316.082 real_cost = 365.77 BayesHH_TS1-scwrl costs 293.263 real_cost = 360.191 ABIpro_TS5-scwrl costs 407.036 real_cost = 358.502 ABIpro_TS4-scwrl costs 421.084 real_cost = 362.903 ABIpro_TS3-scwrl costs 445.228 real_cost = 335.93 ABIpro_TS2-scwrl costs 374.62 real_cost = 354.285 ABIpro_TS1-scwrl costs 386.87 real_cost = 357.425 3Dpro_TS5-scwrl costs 301.808 real_cost = 371.067 3Dpro_TS4-scwrl costs 301.364 real_cost = 363.309 3Dpro_TS3-scwrl costs 301.569 real_cost = 369.797 3Dpro_TS2-scwrl costs 328.554 real_cost = 366.014 3Dpro_TS1-scwrl costs 316.002 real_cost = 356.339 3D-JIGSAW_TS5-scwrl costs 393.407 real_cost = 371.042 3D-JIGSAW_TS4-scwrl costs 385.594 real_cost = 396.959 3D-JIGSAW_TS3-scwrl costs 418.35 real_cost = 377.979 3D-JIGSAW_TS2-scwrl costs 363.207 real_cost = 365.037 3D-JIGSAW_TS1-scwrl costs 361.497 real_cost = 364.576 3D-JIGSAW_RECOM_TS5-scwrl costs 398.585 real_cost = 379.97 3D-JIGSAW_RECOM_TS4-scwrl costs 389.535 real_cost = 378.231 3D-JIGSAW_RECOM_TS3-scwrl costs 386.18 real_cost = 396.918 3D-JIGSAW_RECOM_TS2-scwrl costs 402.291 real_cost = 378.841 3D-JIGSAW_RECOM_TS1-scwrl costs 387.704 real_cost = 377.932 3D-JIGSAW_POPULUS_TS5-scwrl costs 318.094 real_cost = 357.579 3D-JIGSAW_POPULUS_TS4-scwrl costs 306.104 real_cost = 363.188 3D-JIGSAW_POPULUS_TS3-scwrl costs 310.471 real_cost = 356.65 3D-JIGSAW_POPULUS_TS2-scwrl costs 312.856 real_cost = 365.828 3D-JIGSAW_POPULUS_TS1-scwrl costs 315.043 real_cost = 356.562 T0333.try6-opt2.repack-nonPC.pdb.gz costs 269.666 real_cost = 363.314 T0333.try6-opt2.pdb.gz costs 268.477 real_cost = 363.616 T0333.try6-opt2.gromacs0.repack-nonPC.pdb.gz costs 283.818 real_cost = 363.242 T0333.try6-opt2.gromacs0.pdb.gz costs 283.265 real_cost = 363.271 T0333.try6-opt1.pdb.gz costs 273.177 real_cost = 363.372 T0333.try6-opt1-scwrl.pdb.gz costs 278.433 real_cost = 363.077 T0333.try5-opt2.repack-nonPC.pdb.gz costs 276.641 real_cost = 351.594 T0333.try5-opt2.pdb.gz costs 275.525 real_cost = 350.621 T0333.try5-opt2.gromacs0.repack-nonPC.pdb.gz costs 289.307 real_cost = 350.838 T0333.try5-opt2.gromacs0.pdb.gz costs 288.482 real_cost = 350.305 T0333.try5-opt1.pdb.gz costs 279.167 real_cost = 350.892 T0333.try5-opt1-scwrl.pdb.gz costs 282.254 real_cost = 349.936 T0333.try4-opt2.repack-nonPC.pdb.gz costs 268.201 real_cost = 362.659 T0333.try4-opt2.pdb.gz costs 267.956 real_cost = 362.527 T0333.try4-opt2.gromacs0.repack-nonPC.pdb.gz costs 284.892 real_cost = 363.575 T0333.try4-opt2.gromacs0.pdb.gz costs 284.458 real_cost = 363.78 T0333.try4-opt1.pdb.gz costs 272.356 real_cost = 361.705 T0333.try4-opt1-scwrl.pdb.gz costs 276.79 real_cost = 361.08 T0333.try3-opt2.repack-nonPC.pdb.gz costs 274.028 real_cost = 365.557 T0333.try3-opt2.pdb.gz costs 275.914 real_cost = 365.251 T0333.try3-opt2.gromacs0.repack-nonPC.pdb.gz costs 294.321 real_cost = 365.358 T0333.try3-opt2.gromacs0.pdb.gz costs 294.547 real_cost = 364.261 T0333.try3-opt1.pdb.gz costs 290.572 real_cost = 367.021 T0333.try3-opt1-scwrl.pdb.gz costs 291.309 real_cost = 365.784 T0333.try2-opt2.repack-nonPC.pdb.gz costs 282.531 real_cost = 350.708 T0333.try2-opt2.pdb.gz costs 282.82 real_cost = 351.275 T0333.try2-opt2.gromacs0.pdb.gz costs 291.693 real_cost = 351.771 T0333.try2-opt1.pdb.gz costs 291.814 real_cost = 350.77 T0333.try2-opt1-scwrl.pdb.gz costs 294.273 real_cost = 350.833 T0333.try1-opt2.repack-nonPC.pdb.gz costs 276.613 real_cost = 362.996 T0333.try1-opt2.pdb.gz costs 276.112 real_cost = 362.975 T0333.try1-opt2.gromacs0.pdb.gz costs 298.161 real_cost = 365.019 T0333.try1-opt1.pdb.gz costs 288.85 real_cost = 366.701 T0333.try1-opt1-scwrl.pdb.gz costs 291.804 real_cost = 366.521 ../model5.ts-submitted costs 612.038 real_cost = 441.442 ../model4.ts-submitted costs 650.978 real_cost = 452.887 ../model3.ts-submitted costs 276.1 real_cost = 363.058 ../model2.ts-submitted costs 275.545 real_cost = 350.691 ../model1.ts-submitted costs 268.517 real_cost = 363.62 align5 costs 1212.7 real_cost = 488.142 align4 costs 1496.68 real_cost = 423.919 align3 costs 1068.2 real_cost = 468.272 align2 costs 881.704 real_cost = 426.673 align1 costs 994.053 real_cost = 447.663 T0333.try1-opt2.pdb costs 276.112 real_cost = 362.975 model5-scwrl costs 612.038 real_cost = 441.442 model4-scwrl costs 650.978 real_cost = 452.887 model3-scwrl costs 276.1 real_cost = 363.058 model2-scwrl costs 275.545 real_cost = 350.691 model1-scwrl costs 268.517 real_cost = 363.62 T0333 costs 539.334 real_cost = -885 # command:CPU_time= 1332.37 sec, elapsed time= 1418.69 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.predburial.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.predburial.rdb mv -f decoys/evaluate.predburial.pretty decoys/evaluate.predburial.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.predburial.rdb > decoys/evaluate.predburial.pretty make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0333'