Best Alignments for T0333

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2c1xA/T0333-2c1xA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c1xA/T0333-2c1xA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4846e-311.05e-128
2acvA/T0333-2acvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2acvA/T0333-2acvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3216e-301.50e-123
1f0kA/T0333-1f0kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f0kA/T0333-1f0kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.1423e-292.28e-121 1f0kA c.87.1.2
1vgvA/T0333-1vgvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vgvA/T0333-1vgvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9900e-288.46e-98 c.87.1.3
1iirA/T0333-1iirA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1iirA/T0333-1iirA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.7806e-265.10e-122 1iirA c.87.1.5
2acwA/T0333-2acwA-t04-global-adpstyle1.a2m 2acwA/T0333-2acwA-t04-global-adpstyle1.al 2.3228e-151.09e-75
1rzuA/T0333-1rzuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rzuA/T0333-1rzuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1221e-121.09e-64 c.87.1.8
1pswA/T0333-1pswA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pswA/T0333-1pswA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1912e-081.36e-53 c.87.1.7
2bfwA/T0333-2bfwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bfwA/T0333-2bfwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.6192e-065.93e-26
2bisA/T0333-2bisA-t04-global-adpstyle1.a2m 2bisA/T0333-2bisA-t04-global-adpstyle1.al 9.3243e-061.80e-30

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001