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Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0332 TARBP1, Homo sapiens, 159 res
    • gi|52783328|sp|Q9JUU8|RLMB_NEIMA_94:243 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251 2'-O-methyltransferase) [Taxonomy]
    • gi|24987283|pdb|1GZ0|H_104:251 Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb [Taxonomy]
    • gi|24987282|pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb [Taxonomy]
    • gi|24987281|pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb [Taxonomy]
    • gi|24987280|pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb [Taxonomy]
    • gi|24987279|pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb [Taxonomy]
    • gi|24987278|pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb [Taxonomy]
    • gi|24987277|pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb [Taxonomy]
    • gi|24987276|pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb [Taxonomy]
    • gi|68563041|ref|ZP_00602256.1|_84:233 RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM 9941]
    • gi|68510791|gb|EAN34683.1| RNA methyltransferase TrmH, group 3 [Rubrobacter xylanophilus DSM 9941]
    • gi|418440|sp|P32813|YGL3_BACST_4:153 Hypothetical tRNA/rRNA methyltransferase in gldA 3'region (ORF3) [Taxonomy]
    • gi|142979|gb|AAA22478.1| ORF3 is homologous to an ORF downstream of the spoT gene of E.coli; ORF3 [Taxonomy]
    • gi|55589660|ref|XP_514281.1|_1032:1182 PREDICTED: similar to TAR RNA binding protein 1; TAR RNA loop binding protein; TAR (HIV) RNA-binding protein 1 [Pan troglodytes]
    • gi|11141830|gb|AAG32066.1|_125:278 rRNA methyltransferase [Streptomyces viridochromogenes]
    • gi|60593969|pdb|1X7P|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes In Complex With The Cofactor Adomet [Taxonomy]
    • gi|60593968|pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes In Complex With The Cofactor Adomet [Taxonomy]
    • gi|50741356|ref|XP_419559.1|_1440:1590 PREDICTED: similar to TAR RNA binding protein 1; TAR RNA loop binding protein; TAR (HIV) RNA-binding protein 1 [Gallus gallus]
    • gi|60593967|pdb|1X7O|B_125:278 Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes [Taxonomy]
    • gi|60593966|pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes [Taxonomy]
    • gi|22218790|pdb|1IPA|A_116:261 Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase [Taxonomy]
    • gi|68560895|ref|ZP_00600203.1|_77:219 tRNA/rRNA methyltransferase (SpoU) [Rubrobacter xylanophilus DSM 9941]
    • gi|68512965|gb|EAN36764.1| tRNA/rRNA methyltransferase (SpoU) [Rubrobacter xylanophilus DSM 9941]
    • gi|1717813|sp|P52393|TSNR_STRLU_117:261 rRNA (adenosine-2'-O-)-methyltransferase (23S rRNA [AM1067] 2'-O-methyltransferase) (23S rRNA methylase) (Thiostrepton-resistance methylase) [Taxonomy]
    • gi|763508|gb|AAA99931.1| rRNA methyltransferase [Taxonomy]
    • gi|28829684|gb|AAO52200.1|_504:687 similar to Dictyostelium discoideum (Slime mold). Prespore-specific protein (Fragment) [Taxonomy]