# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v2xA 194 1.97e-19 c.116.1.1 100274 1x7oA 287 1.50e-18 1zjrA 211 4.97e-18 1mxiA 160 1.46e-16 c.116.1.1 79646 1z85A 234 2.70e-03 1k3rA 268 3.48e-02 b.40.4.10,c.116.1.2 72018,72019 1o6dA 163 4.76e-02 c.116.1.3 92567 1v6zA 228 8.85e-02 1vhyA 257 2.03e-01 b.122.1.2,c.116.1.5 100714,100715 1othA 321 2.63e-01 1othA c.78.1.1,c.78.1.1 35260,35261 1h1yA 228 2.95e-01 c.1.2.2 76506 1ualA 274 3.18e-01 c.116.1.4 88383 1zjjA 263 3.62e-01 1zxxA 319 5.14e-01 1vbuA 328 7.98e-01 1rreA 200 9.25e-01 d.14.1.10 97791 1o5zA 442 1.14e+00 c.59.1.2,c.72.2.2 92530,92531 1pieA 419 1.21e+00 d.14.1.5,d.58.26.7 94706,94707 1b77A 228 1.50e+00 1b77A d.131.1.2,d.131.1.2 41362,41363 1jztA 246 1.67e+00 c.104.1.1 63319 1u7pA 164 1.99e+00 1kt6A 183 2.22e+00 b.60.1.1 84466 5nul 138 2.37e+00 5nul c.23.5.1 31191 1o7jA 327 2.47e+00 c.88.1.1 81140 1d5rA 324 2.58e+00 1d5rA b.7.1.1,c.45.1.1 23181,32697 1gca 309 2.85e+00 1gca c.93.1.1 35659 1g38A 393 2.98e+00 2admA c.66.1.27 60235 1s9rA 410 3.28e+00 d.126.1.4 98758 1oflA 481 3.38e+00 b.80.1.4 103934 1vmeA 410 3.60e+00 c.23.5.1,d.157.1.3 108893,108894 2ceyA 306 3.89e+00 1duvG 333 3.90e+00 1othA c.78.1.1,c.78.1.1 35228,35229 1eokA 290 4.47e+00 1eokA c.1.8.5 28991 1ns5A 155 4.50e+00 c.116.1.3 80705 1xkrA 206 4.57e+00 1zrn 232 4.66e+00 1qq5A c.108.1.1 43323 1ee8A 266 5.05e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2fhpA 187 5.13e+00 1yzyA 413 5.14e+00 1yz1A 174 5.27e+00 1uok 558 5.60e+00 1uok b.71.1.1,c.1.8.1 27801,28788 2f6uA 234 5.65e+00 1p3dA 475 5.87e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1vpqA 273 5.87e+00 1t9hA 307 6.18e+00 1vd6A 224 6.37e+00 1j8mF 297 6.95e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 2as0A 396 7.06e+00 1zsyA 357 7.40e+00 1te2A 226 7.53e+00 c.108.1.6 106792 8dfr 189 7.90e+00 1aoeA c.71.1.1 34895 1ef8A 261 8.00e+00 1ef8A c.14.1.3 30921 1yh1A 359 8.21e+00 2anuA 255 8.28e+00 2jdxA 385 8.43e+00 1jdw d.126.1.2 41139 1sl4A 155 8.53e+00 d.169.1.1 105710 1fmjA 351 9.00e+00 c.37.1.5 59879 1uufA 369 9.18e+00 b.35.1.2,c.2.1.1 100006,100007 1zq6A 359 9.37e+00 1ag9A 175 9.47e+00 1rcf c.23.5.1 31178 1xm7A 195 9.89e+00 1f28A 297 1.02e+01 1bkpA d.117.1.1 59608 1avaC 181 1.02e+01 1avaC b.42.4.1 25604 1zmtA 254 1.03e+01 1qyiA 384 1.04e+01 c.108.1.13 96595 1pvvA 315 1.07e+01 c.78.1.1,c.78.1.1 95190,95191 1qamA 244 1.07e+01 2ercA c.66.1.24 34220 1o98A 511 1.08e+01 c.105.1.1,c.76.1.3 86684,86685 1st9A 143 1.16e+01 c.47.1.10 98987 1pwxA 254 1.16e+01 c.2.1.2 95262 1d2nA 272 1.16e+01 1d2nA c.37.1.20 32428 2ghrA 302 1.19e+01 1kngA 156 1.22e+01 c.47.1.10 72777 1e87A 118 1.26e+01 1b6e d.169.1.1 42327 2bpqA 373 1.28e+01 1ypfA 336 1.30e+01 1x3lA 440 1.30e+01 2g8lA 299 1.31e+01 2czdA 208 1.43e+01 1ta3A 274 1.44e+01 c.1.8.5 106731 1khdA 345 1.44e+01 a.46.2.1,c.27.1.1 77400,77401 1ii7A 333 1.49e+01 1ii7A d.159.1.4 62415 1jbeA 128 1.51e+01 3chy c.23.1.1 62845 2basA 431 1.52e+01 1kmqA 184 1.53e+01 c.37.1.8 84412 1v3vA 333 1.54e+01 b.35.1.2,c.2.1.1 108345,108346 1914 232 1.54e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1jdw 423 1.55e+01 1jdw d.126.1.2 41129 2b8nA 429 1.56e+01 1yavA 159 1.56e+01 1ecsA 126 1.59e+01 1ecsA d.32.1.2 59407 1otkA 249 1.62e+01 a.25.1.2 93521 1o1zA 234 1.62e+01 c.1.18.3 86555 2ebn 289 1.63e+01 2ebn c.1.8.5 28990 2d5xA 141 1.63e+01 1j0hA 588 1.64e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2fr1A 486 1.65e+01 1h5rA 293 1.66e+01 c.68.1.6 65623 2f9sA 151 1.68e+01 1qo3C 137 1.68e+01 1qo3C d.169.1.1 42350 1w96A 554 1.72e+01 1jixA 351 1.74e+01 1c3jA c.87.1.1 63081 1edt 271 1.79e+01 2ebn c.1.8.5 28993 2d0oA 610 1.84e+01 1xvaA 292 1.84e+01 1xvaA c.66.1.5 34183 1ursA 402 1.90e+01 c.94.1.1 99833 1wa3A 205 1.90e+01 2bibA 547 1.98e+01 1js8A 394 2.00e+01 a.86.1.1,b.112.1.1 67219,67220 1pwaA 162 2.02e+01 b.42.1.1 95211 1gudA 288 2.14e+01 c.93.1.1 83326 1nbwA 607 2.16e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1eemA 241 2.17e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1yb5A 351 2.17e+01 1qxoA 388 2.19e+01 d.258.1.1 96539 1qo2A 241 2.28e+01 1qo2A c.1.2.1 28533 1szqA 483 2.34e+01 e.44.1.1 99045 1wraA 308 2.35e+01 1i6aA 219 2.37e+01 c.94.1.1 61827 1ohfA 644 2.41e+01 b.121.4.8 93014 1t0bA 252 2.46e+01 c.23.16.6 106199 1i3dA 146 2.47e+01 a.1.1.2 61587 1wzcA 249 2.49e+01 1rdfA 267 2.53e+01 c.108.1.3 104884 2agaA 190 2.53e+01 2aeeA 211 2.54e+01 1xuuA 349 2.55e+01 1pswA 348 2.55e+01 c.87.1.7 88287 2go7A 207 2.63e+01 1ur1A 378 2.64e+01 c.1.8.3 99804 1vzwA 244 2.67e+01 1j4aA 333 2.67e+01 c.2.1.4,c.23.12.1 71502,71503 1ydiA 263 2.71e+01 1jvbA 347 2.72e+01 b.35.1.2,c.2.1.1 77181,77182 1o4wA 147 2.73e+01 c.120.1.1 86629 1ohlA 342 2.74e+01 c.1.10.3 87035 2b0cA 206 2.78e+01 1qf9A 194 2.79e+01 1zin c.37.1.1 31848 2d5xB 146 2.85e+01 1qwgA 251 2.85e+01 c.1.27.1 96473 2fv1A 377 2.95e+01 1xg5A 279 2.98e+01 1vk3A 615 3.06e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1yrtA 364 3.09e+01 1gs5A 258 3.13e+01 c.73.1.2 70395 1gk9B 557 3.22e+01 2f9lA 199 3.25e+01 1hf8A 289 3.28e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1byfA 125 3.31e+01 1byfA d.169.1.1 42419 1vhvA 268 3.32e+01 c.90.1.1 100704 1u7zA 226 3.34e+01 1efpB 252 3.34e+01 1efvB c.26.2.3 31636 1tn3 137 3.34e+01 1htn d.169.1.1 42423 1inlA 296 3.35e+01 c.66.1.17 66220 1w6sA 599 3.38e+01 1yt5A 258 3.46e+01 1j2rA 199 3.49e+01 c.33.1.3 90788 1zghA 260 3.49e+01 1m3sA 186 3.50e+01 c.80.1.3 78573 1xx6A 191 3.54e+01 1ucrA 78 3.54e+01 a.4.5.45 99188 1ockA 412 3.56e+01 c.117.1.1 86802 1c93A 265 3.57e+01 2ebn c.1.8.5 28998 1n4qB 377 3.67e+01 a.102.4.3 91636 1hd2A 161 3.70e+01 c.47.1.10 60962 1dusA 194 3.72e+01 1dusA c.66.1.4 34182 1r5yA 386 3.74e+01 c.1.20.1 97134 1nzjA 298 3.76e+01 c.26.1.1 92377 1irdA 141 3.84e+01 a.1.1.2 66286 1mjfA 281 3.84e+01 c.66.1.17 79198 1xphA 150 3.84e+01 2cw6A 298 3.88e+01 1p7gA 222 3.89e+01 a.2.11.1,d.44.1.1 94223,94224 1pne 140 3.95e+01 1pne d.110.1.1 40866 1vkpA 383 3.95e+01 d.126.1.6 108686 1lvwA 295 3.99e+01 c.68.1.6 84723 1o17A 345 4.00e+01 a.46.2.1,c.27.1.1 80765,80766 1vi2A 300 4.01e+01 c.2.1.7,c.58.1.5 100726,100727 1jk0B 345 4.04e+01 a.25.1.2 63143 1ybdA 239 4.06e+01 1vs0A 310 4.06e+01 1xg8A 111 4.09e+01 1thx 115 4.10e+01 1thx c.47.1.1 32732 1a12A 413 4.12e+01 1a12A b.69.5.1 27663 1xyzA 347 4.13e+01 1taxA c.1.8.3 28804 1xwwA 157 4.13e+01 1nnlA 225 4.21e+01 c.108.1.4 85906 1geqA 248 4.21e+01 2tysA c.1.2.4 28589 1uslA 170 4.24e+01 c.121.1.1 99871 2d13A 227 4.25e+01 1g6sA 427 4.32e+01 1eps d.68.2.2 39584 1it2A 146 4.36e+01 a.1.1.2 66365 7taa 478 4.36e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1p2fA 220 4.42e+01 a.4.6.1,c.23.1.1 87720,87721 1z5yE 149 4.44e+01 1efvB 255 4.47e+01 1efvB c.26.2.3 31634 2c4nA 250 4.47e+01 1swvA 267 4.49e+01 2a67A 167 4.50e+01 2bm8A 236 4.54e+01 1zp4A 304 4.56e+01 1tfr 305 4.63e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 2af4C 333 4.64e+01 1l7mA 211 4.64e+01 c.108.1.4 73664 1x1zA 252 4.67e+01 1w0mA 226 4.71e+01 c.1.1.1 109027 1fjgQ 105 4.74e+01 1fjfQ b.40.4.5 25352 1o08A 221 4.74e+01 c.108.1.6 86525 1mhqA 148 4.75e+01 a.118.9.2 84973 1yqdA 366 4.77e+01 1kblA 873 4.77e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1cqxA 403 4.78e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1p4xA 250 4.78e+01 a.4.5.28,a.4.5.28 87784,87785 1q3eA 207 4.81e+01 b.82.3.2 95669 1szwA 379 4.82e+01 d.265.1.4 99047 1u4nA 310 4.82e+01 1ep3A 311 4.86e+01 2dorA c.1.4.1 28597 1lj9A 144 4.91e+01 a.4.5.28 78035 1jf8A 131 4.91e+01 c.44.1.1 66621 1o97D 320 4.99e+01 c.26.2.3,c.31.1.2 81233,81234 1v4xB 146 4.99e+01 a.1.1.2 108364 1ceo 343 5.05e+01 1ceo c.1.8.3 28808 1q8iA 783 5.06e+01 c.55.3.5,e.8.1.1 96208,96209 1k4mA 213 5.16e+01 c.26.1.3 77258 1ma3A 253 5.20e+01 c.31.1.5 78883 1m65A 245 5.21e+01 c.6.3.1 84847 1iueA 98 5.22e+01 d.15.4.1 90697 1qtwA 285 5.22e+01 1qumA c.1.15.1 29392 2bvcA 486 5.23e+01 1ituA 369 5.25e+01 c.1.9.7 71423 1vizA 240 5.30e+01 c.1.4.1 100784 1aihA 170 5.42e+01 1aihA d.163.1.1 42149 1tljA 213 5.47e+01 d.282.1.1 107126 1o7fA 469 5.49e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1vjnA 220 5.54e+01 d.157.1.4 100825 2c2qA 199 5.57e+01 2cdcA 366 5.58e+01 2aamA 309 5.59e+01 2f2hA 773 5.61e+01 1r6xA 395 5.62e+01 b.122.1.3,c.26.1.5 97167,97168 1tc5A 194 5.64e+01 c.110.1.1 106752 1n0xL 215 5.68e+01 b.1.1.1,b.1.1.2 91532,91533 1m4jA 142 5.73e+01 d.109.1.2 78602 1yhtA 367 5.75e+01 2csbA 519 5.77e+01 1qf5A 431 5.80e+01 1adeA c.37.1.10 32212 1ne2A 200 5.81e+01 c.66.1.32 85586 1dcfA 136 5.82e+01 1dcfA c.23.1.2 31124 1v2dA 381 5.85e+01 c.67.1.1 108281 1km4A 247 5.86e+01 c.1.2.3 72740 2bneA 241 5.93e+01 1qczA 169 5.93e+01 1qczA c.23.8.1 31276 1dxeA 256 6.13e+01 1dxeA c.1.12.5 29310 2d0iA 333 6.15e+01 1ii5A 233 6.19e+01 c.94.1.1 62412 1g66A 207 6.27e+01 1bs9 c.69.1.30 31329 2fxqA 264 6.29e+01 1vj2A 126 6.34e+01 b.82.1.10 100796 1tmy 120 6.37e+01 1dbwA c.23.1.1 31083 1wjxA 122 6.47e+01 2fi1A 190 6.48e+01 1xk7A 408 6.55e+01 1l3iA 192 6.56e+01 c.66.1.22 77676 1nsj 205 6.60e+01 1nsj c.1.2.4 28560 2fgqX 332 6.68e+01 1vkmA 297 6.68e+01 c.138.1.1 108670 1cjxA 357 6.70e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 2feaA 236 6.72e+01 2aj7A 163 6.75e+01 1p80A 753 6.78e+01 c.23.16.3,e.5.1.1 94337,94338 1rhs 296 6.83e+01 1rhs c.46.1.2,c.46.1.2 32703,32704 1gk8I 140 6.85e+01 d.73.1.1 65242 1jftA 340 6.87e+01 a.35.1.5,c.93.1.1 66652,66653 1o4sA 389 6.90e+01 c.67.1.1 86620 1vd5A 377 6.90e+01 a.102.1.7 108518 1nvvS 481 6.95e+01 a.117.1.1 86279 1g5tA 196 6.96e+01 1g5rA c.37.1.11 32366 1c30B 382 7.00e+01 c.8.3.1,c.23.16.1 30736,31413 1ptmA 329 7.04e+01 c.77.1.3 95104 1k8kG 151 7.08e+01 a.118.13.1 68313 1o50A 157 7.18e+01 d.37.1.1,d.37.1.1 92478,92479 1wkbA 810 7.21e+01 1ks8A 433 7.22e+01 a.102.1.2 77519 1qnrA 344 7.31e+01 1qnoA c.1.8.3 28834 1iooA 196 7.39e+01 d.124.1.1 71250 1jihA 531 7.42e+01 d.240.1.1,e.8.1.7 90374,90375 1ym3A 215 7.43e+01 1n82A 331 7.45e+01 c.1.8.3 91703 1u0sY 118 7.50e+01 c.23.1.1 107566 2fcr 173 7.56e+01 1rcf c.23.5.1 31151 1lngA 87 7.68e+01 d.201.1.1 74045 1aquA 297 7.71e+01 1aquA c.37.1.5 31942 1oboA 169 7.78e+01 c.23.5.1 86776 1ra9 159 7.86e+01 1vdrA c.71.1.1 34820 1xm8A 254 7.89e+01 1vl7A 157 8.00e+01 b.45.1.1 108732 1pt6A 213 8.00e+01 c.62.1.1 95091 1qx4A 274 8.01e+01 b.43.4.2,c.25.1.1 104624,104625 2b8tA 223 8.10e+01 1i2kA 269 8.13e+01 e.17.1.1 90661 1y1oA 203 8.14e+01 1uehA 253 8.15e+01 c.101.1.1 99259 1ryaA 160 8.17e+01 d.113.1.5 105122 1p0kA 349 8.28e+01 c.1.4.1 87648 1vbkA 307 8.29e+01 1i4jA 110 8.30e+01 d.55.1.1 76734 1xqbA 247 8.30e+01 1wlyA 333 8.40e+01 1hq1A 105 8.42e+01 1dulA a.36.1.1 17120 4dfrA 159 8.44e+01 1vdrA c.71.1.1 34822 1m5wA 243 8.46e+01 c.1.24.1 84836 1i1qB 192 8.46e+01 1qdlB c.23.16.1 61544 1yt8A 539 8.47e+01 8rucI 123 8.49e+01 1rboC d.73.1.1 39629 1rqjA 299 8.52e+01 a.128.1.1 97744 1em2A 229 8.58e+01 1em2A d.129.3.2 41321 1jm1A 204 8.62e+01 b.33.1.1 71745 1wxxA 382 8.63e+01 1b00A 127 8.69e+01 3chy c.23.1.1 31122 1q59A 172 8.69e+01 f.1.4.1 95881 1gtmA 419 8.73e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1l6wA 220 8.77e+01 c.1.10.1 73632 1np6A 174 8.77e+01 c.37.1.10 85954 2ftbA 125 8.87e+01 1prxA 224 8.87e+01 1prxA c.47.1.10 33076