# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v2xA 194 1.05e-18 c.116.1.1 100274 1x7oA 287 1.32e-17 1zjrA 211 3.02e-17 1ipaA 274 1.51e-16 c.116.1.1,d.79.3.3 71254,71255 1mxiA 160 6.35e-16 c.116.1.1 79646 1z85A 234 1.47e-02 1o6dA 163 1.74e-01 c.116.1.3 92567 1k3rA 268 2.33e-01 b.40.4.10,c.116.1.2 72018,72019 1v6zA 228 3.40e-01 1aqb 183 5.88e-01 1aqb b.60.1.1 27084 1hbq 183 6.36e-01 1aqb b.60.1.1 27078 1ualA 274 7.56e-01 c.116.1.4 88383 1kt6A 183 7.60e-01 b.60.1.1 84466 1nxzA 246 7.70e-01 b.122.1.2,c.116.1.5 86391,86392 1zjjA 263 7.79e-01 1othA 321 8.64e-01 1othA c.78.1.1,c.78.1.1 35260,35261 1vhyA 257 8.86e-01 b.122.1.2,c.116.1.5 100714,100715 1h1yA 228 9.02e-01 c.1.2.2 76506 1s9rA 410 1.07e+00 d.126.1.4 98758 1vbuA 328 1.15e+00 1u7pA 164 1.28e+00 1rreA 200 1.41e+00 d.14.1.10 97791 1b77A 228 3.40e+00 1b77A d.131.1.2,d.131.1.2 41362,41363 1pieA 419 3.91e+00 d.14.1.5,d.58.26.7 94706,94707 1gca 309 3.93e+00 1gca c.93.1.1 35659 2gbp 309 4.55e+00 1gca c.93.1.1 35657 5nul 138 4.83e+00 5nul c.23.5.1 31191 1qorA 327 5.36e+00 1qorA b.35.1.2,c.2.1.1 24766,29782 1jztA 246 5.46e+00 c.104.1.1 63319 1zxxA 319 5.52e+00 1yavA 159 5.76e+00 1eokA 290 5.88e+00 1eokA c.1.8.5 28991 1o7jA 327 5.99e+00 c.88.1.1 81140 1td5A 202 6.55e+00 d.110.2.2 106767 1edzA 320 6.98e+00 1ee9A c.2.1.7,c.58.1.2 30287,33935 8dfr 189 7.01e+00 1aoeA c.71.1.1 34895 1xkrA 206 7.05e+00 1vmeA 410 7.16e+00 c.23.5.1,d.157.1.3 108893,108894 1yzyA 413 7.41e+00 1ee8A 266 7.47e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1g38A 393 8.07e+00 2admA c.66.1.27 60235 1d5rA 324 8.15e+00 1d5rA b.7.1.1,c.45.1.1 23181,32697 2ceyA 306 8.33e+00 1om0A 274 8.38e+00 c.1.8.5 87058 1ta3A 274 8.73e+00 c.1.8.5 106731 1ns5A 155 8.92e+00 c.116.1.3 80705 1yh1A 359 9.06e+00 1ef8A 261 9.08e+00 1ef8A c.14.1.3 30921 1fezA 256 9.38e+00 1fezA c.108.1.3 43343 1js8A 394 9.97e+00 a.86.1.1,b.112.1.1 67219,67220 1zq6A 359 1.03e+01 1fgs 428 1.03e+01 1fgs c.59.1.2,c.72.2.2 33959,34962 1o5zA 442 1.04e+01 c.59.1.2,c.72.2.2 92530,92531 1rdfA 267 1.04e+01 c.108.1.3 104884 1ws6A 171 1.05e+01 2bpqA 373 1.05e+01 1dboA 506 1.07e+01 1dbgA b.80.1.4 28034 1ru8A 232 1.08e+01 c.26.2.1 97849 2g8lA 299 1.10e+01 1ii7A 333 1.12e+01 1ii7A d.159.1.4 62415 1zrn 232 1.14e+01 1qq5A c.108.1.1 43323 1te2A 226 1.14e+01 c.108.1.6 106792 2jdxA 385 1.15e+01 1jdw d.126.1.2 41139 1t9hA 307 1.19e+01 1oflA 481 1.19e+01 b.80.1.4 103934 1q9jA 422 1.20e+01 c.43.1.2,c.43.1.2 104590,104591 2ghrA 302 1.22e+01 1dbgA 506 1.26e+01 1dbgA b.80.1.4 28033 1yz1A 174 1.26e+01 1aerA 205 1.31e+01 1aerA d.166.1.1 42249 2czdA 208 1.31e+01 1p3dA 475 1.34e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2f6uA 234 1.34e+01 1sl4A 155 1.34e+01 d.169.1.1 105710 1v8eA 224 1.48e+01 1thx 115 1.50e+01 1thx c.47.1.1 32732 1otkA 249 1.52e+01 a.25.1.2 93521 2fhpA 187 1.62e+01 1qyiA 384 1.63e+01 c.108.1.13 96595 1ag9A 175 1.63e+01 1rcf c.23.5.1 31178 1xhfA 123 1.74e+01 1vd6A 224 1.76e+01 1vjrA 271 1.81e+01 c.108.1.14 100832 1oivA 191 1.84e+01 c.37.1.8 93076 1vpqA 273 1.85e+01 1fjgB 256 1.89e+01 1fjfB c.23.15.1 31400 2d0oA 610 1.92e+01 1xm7A 195 1.93e+01 1gudA 288 1.97e+01 c.93.1.1 83326 1qo2A 241 1.97e+01 1qo2A c.1.2.1 28533 1e87A 118 1.99e+01 1b6e d.169.1.1 42327 1ursA 402 2.02e+01 c.94.1.1 99833 1uufA 369 2.10e+01 b.35.1.2,c.2.1.1 100006,100007 1jdw 423 2.14e+01 1jdw d.126.1.2 41129 1kngA 156 2.16e+01 c.47.1.10 72777 1u7zA 226 2.16e+01 1v3vA 333 2.19e+01 b.35.1.2,c.2.1.1 108345,108346 2ebn 289 2.23e+01 2ebn c.1.8.5 28990 1khdA 345 2.29e+01 a.46.2.1,c.27.1.1 77400,77401 1swvA 267 2.30e+01 1z7wA 322 2.32e+01 1dqpA 230 2.36e+01 1dqnA c.61.1.1 34069 1x3lA 440 2.37e+01 1wzcA 249 2.37e+01 1st9A 143 2.42e+01 c.47.1.10 98987 1qo3C 137 2.45e+01 1qo3C d.169.1.1 42350 2as0A 396 2.47e+01 1l7mA 211 2.50e+01 c.108.1.4 73664 1f28A 297 2.52e+01 1bkpA d.117.1.1 59608 1t0bA 252 2.57e+01 c.23.16.6 106199 2c0cA 362 2.62e+01 1vs0A 310 2.66e+01 1wa3A 205 2.67e+01 1ep3A 311 2.73e+01 2dorA c.1.4.1 28597 1ur1A 378 2.76e+01 c.1.8.3 99804 1edt 271 2.76e+01 2ebn c.1.8.5 28993 1rpjA 288 2.77e+01 2dri c.93.1.1 35656 2f9lA 199 2.83e+01 1nsf 273 2.84e+01 1d2nA c.37.1.20 32429 1j97A 211 2.87e+01 1f5sA c.108.1.4 62753 1yhtA 367 2.87e+01 1fjgQ 105 2.87e+01 1fjfQ b.40.4.5 25352 1h7nA 342 2.89e+01 1b4kA c.1.10.3 60726 2anuA 255 3.00e+01 1yb5A 351 3.01e+01 1i6aA 219 3.04e+01 c.94.1.1 61827 1j1hA 144 3.05e+01 b.111.1.1 77056 1m4jA 142 3.07e+01 d.109.1.2 78602 2d5xA 141 3.09e+01 1duvG 333 3.12e+01 1othA c.78.1.1,c.78.1.1 35228,35229 2aamA 309 3.20e+01 1tf1A 198 3.21e+01 d.110.2.2 106826 1914 232 3.22e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1xuuA 349 3.24e+01 1kmqA 184 3.28e+01 c.37.1.8 84412 1e3jA 352 3.33e+01 1e3jA b.35.1.2,c.2.1.1 24765,29781 1ohlA 342 3.38e+01 c.1.10.3 87035 1tfr 305 3.40e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1rqlA 267 3.45e+01 c.108.1.3 97750 2b8nA 429 3.48e+01 2f9sA 151 3.48e+01 1iwhB 146 3.49e+01 a.1.1.2 76883 1xyzA 347 3.53e+01 1taxA c.1.8.3 28804 1jbeA 128 3.53e+01 3chy c.23.1.1 62845 1zp4A 304 3.54e+01 1o4wA 147 3.62e+01 c.120.1.1 86629 1o4uA 285 3.66e+01 c.1.17.1,d.41.2.1 86624,86625 1o98A 511 3.67e+01 c.105.1.1,c.76.1.3 86684,86685 1c93A 265 3.67e+01 2ebn c.1.8.5 28998 1o17A 345 3.68e+01 a.46.2.1,c.27.1.1 80765,80766 2c4nA 250 3.74e+01 1n4qB 377 3.75e+01 a.102.4.3 91636 1ituA 369 3.83e+01 c.1.9.7 71423 1oixA 191 3.84e+01 1vlwA 217 3.85e+01 c.1.10.1 108868 1iwhA 141 3.86e+01 a.1.1.2 76882 1h5rA 293 3.89e+01 c.68.1.6 65623 1ockA 412 3.95e+01 c.117.1.1 86802 1vhvA 268 3.97e+01 c.90.1.1 100704 1z7yA 322 4.02e+01 1qbkB 890 4.06e+01 1qbkB a.118.1.1 19127 2cw6A 298 4.06e+01 1dqnA 230 4.09e+01 1dqnA c.61.1.1 34067 2agaA 190 4.14e+01 1o1zA 234 4.17e+01 c.1.18.3 86555 1ea9C 583 4.17e+01 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2phlA 397 4.19e+01 1dgwA b.82.1.2,b.82.1.2 28082,28083 1qxoA 388 4.21e+01 d.258.1.1 96539 2d5xB 146 4.33e+01 1eqjA 511 4.36e+01 1ejjA c.105.1.1,c.76.1.3 59495,59496 1i3dA 146 4.38e+01 a.1.1.2 61587 1fmjA 351 4.39e+01 c.37.1.5 59879 1vzwA 244 4.39e+01 1w6kA 732 4.41e+01 1j0hA 588 4.43e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1j8mF 297 4.44e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1byfA 125 4.50e+01 1byfA d.169.1.1 42419 1qtwA 285 4.54e+01 1qumA c.1.15.1 29392 1yr0A 175 4.55e+01 7taa 478 4.60e+01 7taa b.71.1.1,c.1.8.1 27778,28765 2basA 431 4.68e+01 1iooA 196 4.69e+01 d.124.1.1 71250 1w6sA 599 4.74e+01 1p7gA 222 4.85e+01 a.2.11.1,d.44.1.1 94223,94224 1hd2A 161 4.86e+01 c.47.1.10 60962 1n0xL 215 4.88e+01 b.1.1.1,b.1.1.2 91532,91533 5ukdA 194 4.91e+01 1zin c.37.1.1 31851 1lngA 87 4.96e+01 d.201.1.1 74045 1drw 273 4.99e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1ecsA 126 5.04e+01 1ecsA d.32.1.2 59407 1dvjA 246 5.05e+01 1dvjA c.1.2.3 28546 1oz7A 131 5.09e+01 d.169.1.1 93806 1bmtA 246 5.10e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 3chy 128 5.15e+01 3chy c.23.1.1 31038 1o08A 221 5.20e+01 c.108.1.6 86525 1nbwA 607 5.21e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 2fi1A 190 5.22e+01 1xbtA 193 5.24e+01 1qf9A 194 5.25e+01 1zin c.37.1.1 31848 1tn3 137 5.26e+01 1htn d.169.1.1 42423 1a12A 413 5.27e+01 1a12A b.69.5.1 27663 1m65A 245 5.33e+01 c.6.3.1 84847 1qamA 244 5.41e+01 2ercA c.66.1.24 34220 1vk3A 615 5.48e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1j8yF 297 5.50e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 2b0cA 206 5.51e+01 1xwwA 157 5.55e+01 1tljA 213 5.63e+01 d.282.1.1 107126 1uslA 170 5.64e+01 c.121.1.1 99871 2csbA 519 5.67e+01 1ypfA 336 5.76e+01 1xphA 150 5.78e+01 2fv1A 377 5.83e+01 1l6wA 220 5.89e+01 c.1.10.1 73632 1w0mA 226 5.91e+01 c.1.1.1 109027 1wviA 257 5.92e+01 1bxeA 113 5.95e+01 1bxeA d.55.1.1 38898 1z5yE 149 5.97e+01 1nnlA 225 6.03e+01 c.108.1.4 85906 1o0uA 429 6.04e+01 c.118.1.1 80743 1et0A 269 6.06e+01 1et0A e.17.1.1 43289 1u2pA 163 6.11e+01 1rkuA 206 6.15e+01 c.108.1.11 97627 1k4mA 213 6.17e+01 c.26.1.3 77258 1ydiA 263 6.17e+01 1zmtA 254 6.19e+01 1xwtA 405 6.25e+01 2b5oA 402 6.25e+01 2fliA 220 6.26e+01 2d13A 227 6.31e+01 1szqA 483 6.31e+01 e.44.1.1 99045 2bm8A 236 6.36e+01 1eemA 241 6.42e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1lmeA 176 6.42e+01 d.167.1.1 84629 1cozA 129 6.43e+01 1cozA c.26.1.2 31598 1ii5A 233 6.48e+01 c.94.1.1 62412 2cvhA 220 6.57e+01 1lrwA 600 6.59e+01 b.70.1.1 91111 1wb9A 800 6.63e+01 1inlA 296 6.67e+01 c.66.1.17 66220 1p2fA 220 6.68e+01 a.4.6.1,c.23.1.1 87720,87721 1pgjA 478 6.71e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1n5nA 180 6.73e+01 d.167.1.1 85336 1i8jA 323 6.75e+01 1b4kA c.1.10.3 61968 1pvvA 315 6.79e+01 c.78.1.1,c.78.1.1 95190,95191 2bvcA 486 6.85e+01 1cc1L 498 6.91e+01 1h2rL e.18.1.1 43301 1lfpA 249 7.00e+01 e.39.1.1 73885 2an1A 292 7.00e+01 1n82A 331 7.03e+01 c.1.8.3 91703 1zsyA 357 7.05e+01 1irdA 141 7.06e+01 a.1.1.2 66286 1jvbA 347 7.06e+01 b.35.1.2,c.2.1.1 77181,77182 1lvwA 295 7.07e+01 c.68.1.6 84723 1p6pA 125 7.10e+01 b.60.1.2 87839 1q3eA 207 7.14e+01 b.82.3.2 95669 2aaa 484 7.14e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1nktA 922 7.20e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 1qczA 169 7.22e+01 1qczA c.23.8.1 31276 1fgkA 310 7.22e+01 1fgkA d.144.1.7 41693 2aeeA 211 7.23e+01 1pswA 348 7.29e+01 c.87.1.7 88287 1k9jA 139 7.31e+01 d.169.1.1 68353 1np6A 174 7.31e+01 c.37.1.10 85954 1l6sA 323 7.31e+01 c.1.10.3 73627 1j7yA 141 7.39e+01 a.1.1.2 66426 1zq1A 438 7.44e+01 1t01A 255 7.46e+01 a.24.9.1,a.24.9.1 106188,106189 2cdcA 366 7.54e+01 1w96A 554 7.55e+01 2bce 581 7.58e+01 2bce c.69.1.1 34625 1uok 558 7.65e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1vi2A 300 7.69e+01 c.2.1.7,c.58.1.5 100726,100727 1r5yA 386 7.70e+01 c.1.20.1 97134 1ybdA 239 7.74e+01 1p4xA 250 7.77e+01 a.4.5.28,a.4.5.28 87784,87785 1avaC 181 7.78e+01 1avaC b.42.4.1 25604 1xwiA 322 7.80e+01 1mp4A 292 7.81e+01 c.68.1.6 79376 1xg4A 295 7.87e+01 1mumA 295 7.87e+01 c.1.12.7 85108 1gk9B 557 7.98e+01 1lj9A 144 7.99e+01 a.4.5.28 78035 1it2A 146 8.02e+01 a.1.1.2 66365 1tmy 120 8.05e+01 1dbwA c.23.1.1 31083 1ymqA 261 8.10e+01 1ohfA 644 8.14e+01 b.121.4.8 93014 1ryaA 160 8.30e+01 d.113.1.5 105122 2his 312 8.31e+01 1taxA c.1.8.3 28918 1dlfL 113 8.34e+01 8fabA b.1.1.1 20382 2ftbA 125 8.37e+01 1tx4B 178 8.39e+01 1ctqA c.37.1.8 32045 1mjfA 281 8.39e+01 c.66.1.17 79198 1xoyA 161 8.47e+01 1q59A 172 8.49e+01 f.1.4.1 95881 1wmuB 146 8.50e+01 a.1.1.2 109417 1y7pA 223 8.51e+01 1e3mA 800 8.59e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1u8vA 490 8.71e+01 1q8iA 783 8.75e+01 c.55.3.5,e.8.1.1 96208,96209 2go7A 207 8.78e+01 1em2A 229 8.82e+01 1em2A d.129.3.2 41321 1x1zA 252 8.85e+01 1ikpA 613 8.87e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 2f2hA 773 8.90e+01 1g6sA 427 8.96e+01 1eps d.68.2.2 39584 1d1qA 161 8.97e+01 1dg9A c.44.1.1 32642