(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0331 FG7459A, Streptococcus suis, 149 res 
                     10         20        30        40         50      
                     |          |         |         |          |      
   1 ...M.E...LKDIMHIL.EDMKVGVFATLDEYGNPHARHAHITAANEEG.IFFMTSPETHFYDQL
   2 ...M.E...LKDIMHIL.EDMKVGVFATLDEYGNPHARHAHITAANEEG.IFFMTSPETHFYDQL
   3 ...M.D...LKEIAQFL.DDNAPAFLATLGTCGNPRVRPIQSPLLVRDK.IYFCTANTKGLFKHI
   4 ...M.D...LKEIAQFL.DDNAPAFLATLGTCGNPRVRPIQSPLLVGDK.IYFCTANTKGLFKHI
   5 ...M.D...LKEIAQFL.DDNAPAFLATLGTCGNPRVRPIQSPLLVGDK.IYFCTANTKGLFKHI
   6 m..M.D...LKEIAQFL.DDNAPAFLATLGTCGNPRVRPIQSPLLVGDK.IYFCTANTKGLFKHI
   7 ...-.-...MKEVLDML.PAPCYGSLATVAG-GKPRVRPFAFMYEENGR.FYFCTASNKEVYRQL
   8 ...M.D...FKDCIKFA.NETPVCYLATVEG-DQPRVRALGFWFADESG.FYFQIGATKDMYSQL
   9 ...-.-...MKEVVDFL.MKSQIQYFATVGTDGKPKVRPFQLMMEEGGK.LYFCTSNKKEVFKEV
  10 ...M.D...LKEIEQFL.DENTPAFLATLGTCGNPRVRPMQSPLLVGDR.IYFCTSNNKGLFKHI
  11 lrgG.G...MEDPLEFL.RNIKSVAVATVDD-GKPAVRMSDVMLVEHEK.LYFLTARGKPYYRQL
  12 ...-.-...MQEVVRFL.NENSTGFLATAEE-GKPKVRPFQFMLEDDGK.LYFCTANTKDVFKQL
  13 ...-.-...MDEVLKFL.TDNPVFYIATVDG-GRPRVRPFGFVMKYEGK.LWFCTNNQKNVYKQL
  14 nddS.T...NNDFLDFVtDDIHNAVVSTVDKYDHPYAQVCDMLYHTDGK.LYLMTKEGNELFNCI
  15 ...-.-...MIDFSKFL.KENLNGIFTTVEN-GKPKSRAFQFLFSDGKK.VYFCTENNKAVYKQI
  16 ...M.N...QQQILELI.NRNSAFFLATVED-GEPRVRGMLLYRAEENG.IIFHTGAMKDVHRQM
  17 ...M.N...IEDIYKKF.DKIGCLTFATIDK-GTPQTRIAHLFAYDHEG.LYFRTMITKPFYEQL
  18 ...MtN...VEKISEFL.TQAKVFTFLTVDN-GQPKGRPFGFHLVDGDR.IYFGTGTFKNCFKQL
  19 nnqT.S...NEEFLEFAtNEVHNVDVAT-THHGAPSAQVCDLVLNKNGK.LYIVTSSQNPFFQDL
  20 ...S.NqeaVETVKKLI.DKIETAMLTTISDEGL-VSRPMQTQDIEFDGdLWFLTSKDTGKYNEI


        60             70             80         90                100 
        |              |              |          |                  | 
   1 MGDQRVAMTAISE.....EG..YLIQ..V.VRVEGTARPVEND.YL.K.T.VF...ADNP...YY
   2 MGDQRVAMTAISE.....EG..YLIQ..V.VRVEGTARPVEND.YL.K.T.VF...ADNP...YY
   3 KNYNGIEFCSCAK.....DG..TF--..-.LRLRANAVFEPNL.EV.K.KmMF...EKYP...YL
   4 KNYNGIEFCSCAK.....DG..TF--..-.LRLRANAVFEPNL.EV.K.KmMF...KKYP...YL
   5 KNYNDIEFCSCAK.....DG..TF--..-.LRLRANAVFEPNL.EV.K.KmMF...KKYP...YL
   6 KNYNDIEFCSCAK.....DG..TF--..-.LRLRANAVFEPNL.EV.K.KmMF...KKYP...YL
   7 TETPFIEFTRTDE.....Q-..--MR..W.LRIGGEITFDEDIkSR.E.K.CF...ANYP...ML
   8 QANPKVEACFWQP.....GE..ATGK..M.MRVAGKIEFVEDP.GL.K.KkVL...EDRP...FL
   9 QKQPHVELCA-SG.....EN..F--S..W.LRLKGKVVFSNEL.TL.KaK.VL...EASP...LV
  10 QNYNGIEFCSCSR.....EG..VF--..-.LRLRANAVFEPNA.KV.K.ElMF...EKYP...YL
  11 KKNPEIALVGM-D.....KN..YVM-..-.VRVRGRIEFVENI.FL.E.K.IF...EINP...VL
  12 KVNPFVEFSASTP.....Q-..--FA..W.IRLSGEVKFSNDL.GI.KeK.IL...ERSA...LV
  13 RENPYFELCTASP.....DR..---K..W.LRLKGRAVFNSTP.QA.KaK.AL...EVMP...EL
  14 KRAPELVITASKG.....DG..TMGS..VgIALKGKAYIVDHK.YQ.S.E.IF...ATNP...YL
  15 KENPNVSFCTHKT.....D-..-FSY..V.LSISGKATFVNDI.NL.K.TrAL...NEYP...ML
  16 IANPAVELC-FND.....WQ..T-QQ..Q.VRVRGTARLVEDS.AL.K.E.EI...VNSPgreFL
  17 SKTKKASICGMYPkt8nwEGmpYFPPgyT.IRATGNVREIPFD.VL.KeK.SV...ADEM...FL
  18 SADPHVEVMAVNG.....GK..FM--..-.-RYDGLAKIVKDD.ALlA.K.VH...EAMP...QL
  19 IHQPKVIINGYKG.....DG..TMDS..CgFSIRGIIKNVEHE.YI.D.E.IF...EKND...YL
  20 LKNPNVN-VAYVD.....KS..Y---..-.VSIRGKAEFVEDV.AR.K.K.ELwspRYEA...YL


                  110       120               130            140       
                   |         |                 |              |       
   1 QHIYK...DE...SSDTMQVFQIYAGHGFYHS..L.T.....QGHKYI...FS..IGQGEHSEVR
   2 QHIYK...DE...SSDTMQVFQIYAGHGFYHS..L.T.....QGHKYI...FS..IGQGEHSEVR
   3 VNLYE...TP...QNPKFEVFYLDHL------..-.-.....------...--..----------
   4 VNLYE...TP...QNPKFEVFYLDHL------..-.-.....------...--..----------
   5 VNLYE...TP...QNPKFEVFYLDHL------..-.-.....------...--..----------
   6 VNLYE...TP...QNPKFEVFYLDHL------..-.-.....------...--..----------
   7 KDIYQ...TP...DNPLFKVFYLEHGAASVNS..L.T.....EPPKN-...FE..F---------
   8 KEFGL...TF...DHPGLIIFRIARGEAYFWT..M.Etnl..EPKKFI...-K..FGN-------
   9 KSIYN...SP...DNPAFEVFYLADAVATIAD..F.S.....GNPPRT...YN..L---------
  10 VSLYE...NP...QNSRFEVFYLDNL------..-.-.....------...--..----------
  11 DEIYP...ED...TKDILEVFCLSSGVGEMYD..L.Sgi...PPKRER...FA..FGGAKVAEPG
  12 KSIYQ...TA...DNPVFEAFYIEHGTAVIAD..F.Sg....QPPKVV...-E..----------
  13 KAMYS...AD...D-PIFEVFYVEEGEATFYS..L.T.....GETRTV...-K..----------
  14 NQIYAshlEE...AKEYMHTIEVQLESGSIYDirL.N.....PIYQRK...FQ..F---------
  15 KEIFK...TS...DNPVFELFYVDVEEVDTFD..FvN.....GSKKEK...--..----------
  16 KPLVE...KM...GLNVLSVFRVESCRAHIWT..M.E.....TN----...--..----------
  17 LGVKD...IE...KYPAMTTFCLYEAWGEVYD..F.DyemehRSHKLLregFS..FGGALIP-FR
  18 KETYD...KN...GWEIV-LFYLENGHAEIRG..L.F.....EV----...--..----------
  19 NEIYA...DDiegAKEDLRVLEITPKEAAYLD..H.R.....T-----...--..----------
  20 GTTYE...DP...KVVLIKVNTEGAEYWETGN..T.T.....KSVKQL...LKkaVGNDDSNEIN


           
          
   1 AL...
   2 AL...
   3 --...
   4 --...
   5 --...
   6 --...
   7 --...
   8 --...
   9 --...
  10 --...
  11 YKit.
  12 --...
  13 --...
  14 --...
  15 --...
  16 --...
  17 GVrit
  18 --...
  19 --...
  20 KKvdl