# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 1.27e-12 1ci0A b.45.1.1 25753 1g79A 218 2.53e-12 1ci0A b.45.1.1 25752 2fhqA 141 1.05e-11 1rfeA 162 3.53e-11 1nrgA 261 4.56e-11 b.45.1.1 80694 1ty9A 222 7.73e-10 1vl7A 157 2.78e-08 b.45.1.1 108732 2fg9A 178 4.49e-08 2aq6A 147 2.58e-06 2furA 209 3.24e-06 1w9aA 147 5.72e-06 2asfA 137 4.13e-05 1xhnA 184 9.70e-03 2fcjA 119 1.69e-02 2arzA 247 3.14e-02 1ejeA 192 1.08e-01 1ejeA b.45.1.2 25757 2bv2A 83 1.08e-01 1c1lA 136 2.56e-01 1c1lA b.29.1.3 24219 1u09A 476 4.47e-01 e.8.1.4 107545 1yc5A 246 5.01e-01 2dcnA 311 5.61e-01 3thiA 371 6.43e-01 2thiA c.94.1.1 35792 1ye8A 178 6.70e-01 1flmA 122 7.00e-01 1axj b.45.1.1 25747 1udzA 182 7.18e-01 b.51.1.1 99239 1nmeA 146 7.18e-01 c.17.1.1 85874 1r2zA 274 8.59e-01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1zmtA 254 8.97e-01 1wnyA 186 9.77e-01 1vc1A 110 1.09e+00 c.13.2.1 108493 1zirA 173 1.17e+00 1pwxA 254 1.18e+00 c.2.1.2 95262 1pvmA 184 1.30e+00 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2av5A 120 1.40e+00 1jalA 363 1.74e+00 c.37.1.8,d.15.10.2 84138,84139 1a7j 290 1.77e+00 1a7j c.37.1.6 31952 1t77A 414 1.86e+00 2gwgA 350 1.97e+00 1q32A 544 2.67e+00 d.136.1.3,d.136.1.3 104507,104508 1tfr 305 2.79e+00 1tfr a.60.7.1,c.120.1.2 18081,33351 1jw9B 249 3.34e+00 c.111.1.1 67377 1ylnA 252 3.62e+00 2d0iA 333 3.85e+00 1m8uA 173 4.06e+00 b.11.1.1,b.11.1.1 91233,91234 1st9A 143 4.17e+00 c.47.1.10 98987 1up9A 107 4.28e+00 1zpwX 90 4.55e+00 1weoA 93 4.55e+00 1v3vA 333 4.96e+00 b.35.1.2,c.2.1.1 108345,108346 1vjgA 218 5.08e+00 c.23.10.6 100810 1no5A 114 5.09e+00 d.218.1.5 92014 2a1fA 247 5.38e+00 1npsA 88 5.85e+00 1prs b.11.1.1 23622 2g09A 297 5.94e+00 1di6A 195 6.53e+00 1di6A c.57.1.1 33863 1mjfA 281 6.62e+00 c.66.1.17 79198 1i24A 404 6.71e+00 c.2.1.2 83663 1hyp 80 7.12e+00 1hyp a.52.1.1 17806 1zud1 251 7.20e+00 1v0wA 506 8.09e+00 d.136.1.2,d.136.1.2 108220,108221 1yhtA 367 8.21e+00 1fp3A 402 8.21e+00 1fp3A a.102.1.3 18842 1jwqA 179 8.36e+00 c.56.5.6 90921 1is3A 135 8.47e+00 b.29.1.3 76773 2sli 679 8.59e+00 2sli b.29.1.9,b.68.1.1 24274,27611 1h6kA 757 8.59e+00 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1zybA 232 8.99e+00 1j1lA 290 9.20e+00 b.82.1.12 90766 2ayuA 417 1.00e+01 2f46A 156 1.02e+01 1o98A 511 1.03e+01 c.105.1.1,c.76.1.3 86684,86685 1zsyA 357 1.04e+01 1rgzA 363 1.04e+01 e.3.1.1 97457 2f0aA 98 1.05e+01 1vliA 385 1.07e+01 b.85.1.1,c.1.10.6 108830,108831 1bco 327 1.13e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1wekA 217 1.17e+01 1l5pA 93 1.22e+01 d.15.4.1 73598 2f6kA 307 1.27e+01 1a76 326 1.29e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 2cu3A 64 1.39e+01 1sl4A 155 1.41e+01 d.169.1.1 105710 2f9sA 151 1.42e+01 1a92A 50 1.51e+01 1a92A h.4.6.1 45791 2biiA 424 1.58e+01 1i3cA 149 1.59e+01 c.23.1.1 71112 1wy2A 351 1.65e+01 2fdbM 164 1.67e+01 1o8xA 146 1.69e+01 c.47.1.10 86681 1w1hA 151 1.71e+01 1vqtA 213 1.78e+01 1d8bA 81 1.80e+01 1d8bA a.60.8.1 18094 1lmb3 92 1.82e+01 1lmb3 1tif 78 1.83e+01 1tif d.15.8.1 37836 1epuA 591 1.84e+01 1dn1A e.25.1.1 43358 1q5nA 454 1.90e+01 a.127.1.1 95901 1bouB 302 2.01e+01 1bouB c.56.6.1 33859 1tr8A 102 2.10e+01 2auwA 170 2.12e+01 1jfuA 186 2.33e+01 c.47.1.10 62940 1vr3A 191 2.37e+01 1sx5A 244 2.41e+01 c.52.1.2 99023 1gxuA 91 2.41e+01 d.58.10.1 76378 1q8yA 373 2.44e+01 d.144.1.7 96234 2ck3A 510 2.48e+01 2a9uA 144 2.48e+01 1iz6A 138 2.53e+01 b.34.5.2,b.40.4.5 76976,76977 2b0aA 186 2.57e+01 1ln1A 214 2.63e+01 d.129.3.2 74038 1x82A 190 2.67e+01 1o4rA 108 2.67e+01 d.93.1.1 92469 2bwrA 401 2.80e+01 1h6pA 203 2.83e+01 a.146.1.1 60690 2cwpA 112 2.90e+01 1sxvA 172 2.96e+01 1zkjA 359 2.97e+01 1gr3A 160 3.04e+01 b.22.1.1 65476 1f74A 293 3.10e+01 1nal3 c.1.10.1 29079 1knqA 175 3.11e+01 c.37.1.17 72786 1bn8A 420 3.26e+01 1pcl b.80.1.1 28022 1gdvA 85 3.28e+01 1ctj a.3.1.1 60458 1qlmA 316 3.31e+01 1qlmA d.147.1.1 41765 1jztA 246 3.31e+01 c.104.1.1 63319 1lzlA 323 3.37e+01 c.69.1.2 78306 1pme 380 3.41e+01 1hcl d.144.1.7 41653 1ptmA 329 3.42e+01 c.77.1.3 95104 1h8eA 510 3.43e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1nrlA 316 3.51e+01 a.123.1.1 92091 1vimA 200 3.57e+01 c.80.1.3 100758 1e5pA 151 3.64e+01 1bj7 b.60.1.1 59272 1jjvA 206 3.74e+01 c.37.1.1 71698 1dbwA 126 3.79e+01 1dbwA c.23.1.1 31095 1iueA 98 3.80e+01 d.15.4.1 90697 1v33A 366 3.80e+01 d.264.1.1 100278 1whrA 124 3.87e+01 1x72A 334 3.89e+01 d.126.1.6 109495 1ijaA 148 4.07e+01 1ijaA b.100.1.1 62484 1r6xA 395 4.18e+01 b.122.1.3,c.26.1.5 97167,97168 2etvA 346 4.30e+01 2bneA 241 4.32e+01 1vd6A 224 4.58e+01 1wu9A 80 4.65e+01 1vgjA 184 4.87e+01 1s5jA 847 4.89e+01 1gvnB 287 4.90e+01 c.37.1.21 76354 1ux8A 132 4.91e+01 2fwuA 157 4.93e+01 1ybdA 239 4.95e+01 1q44A 326 4.96e+01 c.37.1.5 95779 1cozA 129 4.99e+01 1cozA c.26.1.2 31598 1hyoA 421 5.01e+01 1qcnA b.34.8.1,d.177.1.1 59001,59002 1qo2A 241 5.04e+01 1qo2A c.1.2.1 28533 1d2fA 390 5.05e+01 1d2fA c.67.1.3 34411 1ryp2 233 5.07e+01 1ryp2 2bjrA 368 5.22e+01 2an9A 207 5.25e+01 1u6tA 121 5.26e+01 1ek0A 170 5.26e+01 1ctqA c.37.1.8 32076 1u7nA 336 5.29e+01 c.77.1.4 107726 1pmi 440 5.34e+01 1pmi b.82.1.3 28114 1yixA 265 5.36e+01 1wr8A 231 5.38e+01 2a1kA 233 5.47e+01 2b4yA 271 5.49e+01 1upqA 123 5.67e+01 2f8yA 223 5.67e+01 1n1bA 549 5.69e+01 a.102.4.1,a.128.1.3 79799,79800 1w7lA 422 5.73e+01 c.67.1.1 109226 1lm8V 160 5.79e+01 b.3.3.1 74035 1myn 44 5.80e+01 1gpt g.3.7.4 44172 1u9cA 224 5.92e+01 2ajgA 196 6.12e+01 2adzA 178 6.17e+01 2b82A 211 6.33e+01 1q8dA 108 6.42e+01 a.228.1.1 104554 1khdA 345 6.54e+01 a.46.2.1,c.27.1.1 77400,77401 1ekjA 221 6.60e+01 1ekjB c.53.2.1 33364 1gpc 218 6.62e+01 1gpc b.40.4.7 25393 1rmwA 212 6.64e+01 1i7dA 659 6.67e+01 1d6mA e.10.1.1 61886 1hh1A 143 6.69e+01 1gefA c.52.1.18 61036 1k12A 158 6.78e+01 b.18.1.15 71978 2bw3A 534 6.79e+01 1yqyA 523 6.85e+01 1nowA 507 6.89e+01 c.1.8.6,d.92.2.1 85936,85937 1ni9A 338 6.90e+01 e.7.1.2 85739 1r0vA 305 7.02e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1i1jA 108 7.09e+01 1i1jA b.34.2.1 61531 1j09A 468 7.19e+01 a.97.1.1,c.26.1.1 77025,77026 2fdiA 211 7.35e+01 1i6aA 219 7.47e+01 c.94.1.1 61827 1amm 174 7.56e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1bfg 146 7.63e+01 1bfg b.42.1.1 25485 1n3lA 372 7.65e+01 c.26.1.1 79966 2cfxA 144 7.80e+01 2cmuA 342 7.82e+01 2eveA 157 7.84e+01 1l3iA 192 7.85e+01 c.66.1.22 77676 1byyA 53 7.86e+01 j.12.1.1 46147 1g57A 217 7.91e+01 1g57A d.115.1.2 60253 1oxkB 134 7.92e+01 c.23.1.1 93691 2d1pB 119 7.93e+01 1vyiA 112 7.97e+01 2flsA 132 7.97e+01 1p9kA 79 8.00e+01 d.66.1.6 94392 2etgA 296 8.00e+01 1xkzA 255 8.03e+01 2eu9A 355 8.24e+01 1obdA 306 8.27e+01 d.143.1.1 86767 1s8iA 121 8.28e+01 a.133.1.2 98735 1qnaA 200 8.33e+01 1ytbA d.129.1.1,d.129.1.1 41226,41227 1n0wA 243 8.36e+01 c.37.1.11 79772 1zt3A 80 8.41e+01 1xg7A 250 8.42e+01 1zo2A 129 8.44e+01 1yfsA 465 8.46e+01 1s96A 219 8.46e+01 c.37.1.1 98740 1pbyA 489 8.54e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1hgxA 183 8.68e+01 1tc1A c.61.1.1 34027 1q9uA 130 8.76e+01 d.129.7.1 96314 1lwdA 413 8.78e+01 c.77.1.1 78265 2axpA 173 8.80e+01 1zi8A 236 8.85e+01 1zhcA 76 8.85e+01 1jykA 254 8.91e+01 c.68.1.13 67458 2ey4C 82 8.97e+01 1vk4A 298 8.98e+01 c.72.1.1 100850