# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fhqA 141 9.33e-11 1rfeA 162 7.26e-10 1dnlA 199 8.27e-10 1ci0A b.45.1.1 25753 1g79A 218 9.97e-10 1ci0A b.45.1.1 25752 1nrgA 261 1.50e-08 b.45.1.1 80694 1ty9A 222 1.72e-08 1vl7A 157 3.69e-08 b.45.1.1 108732 2fg9A 178 5.02e-07 2aq6A 147 1.27e-06 2furA 209 5.61e-06 2asfA 137 8.72e-06 1w9aA 147 1.47e-05 1xhnA 184 4.03e-05 2arzA 247 2.33e-04 1flmA 122 1.93e-02 1axj b.45.1.1 25747 2a1fA 247 1.92e-01 1ejeA 192 5.88e-01 1ejeA b.45.1.2 25757 1c8uA 285 1.49e+00 1c8uA d.38.1.3,d.38.1.3 38547,38548 1v0wA 506 1.97e+00 d.136.1.2,d.136.1.2 108220,108221 3fib 249 2.38e+00 3fib d.171.1.1 42455 2bneA 241 2.49e+00 1v54B 227 3.16e+00 b.6.1.2,f.17.2.1 100322,100323 1zkjA 359 3.17e+00 1w1hA 151 3.26e+00 1vlyA 338 3.33e+00 b.44.2.1,d.250.1.1 108871,108872 1rgzA 363 3.48e+00 e.3.1.1 97457 2g09A 297 3.96e+00 2f6kA 307 5.18e+00 1x72A 334 5.19e+00 d.126.1.6 109495 2bv2A 83 5.22e+00 1r6xA 395 6.09e+00 b.122.1.3,c.26.1.5 97167,97168 1aly 146 6.96e+00 1aly b.22.1.1 23856 1zybA 232 7.34e+00 2cmuA 342 7.61e+00 1cbs 137 7.99e+00 1hmt b.60.1.2 27201 1j1lA 290 8.32e+00 b.82.1.12 90766 1sx5A 244 9.29e+00 c.52.1.2 99023 2fauA 341 1.04e+01 2d37A 176 1.10e+01 1ye8A 178 1.10e+01 1vpkA 378 1.12e+01 1oacA 727 1.15e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1qwdA 177 1.19e+01 b.60.1.1 96471 1jwqA 179 1.29e+01 c.56.5.6 90921 1rl6A 177 1.30e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1ockA 412 1.38e+01 c.117.1.1 86802 1crzA 403 1.42e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1l3iA 192 1.53e+01 c.66.1.22 77676 1udzA 182 1.59e+01 b.51.1.1 99239 1fxkC 133 1.61e+01 1fxkC a.2.5.1 15702 1s5jA 847 1.66e+01 1zdzA 302 1.69e+01 1u7bA 261 1.73e+01 1e4iA 447 1.76e+01 1e70M c.1.8.4 59225 1d2fA 390 1.79e+01 1d2fA c.67.1.3 34411 2b5eA 504 1.86e+01 1di6A 195 1.88e+01 1di6A c.57.1.1 33863 1rgyA 360 1.91e+01 e.3.1.1 97456 1z2wA 192 1.94e+01 2ahuA 531 2.00e+01 2fp4B 395 2.02e+01 1q1uA 144 2.12e+01 b.42.1.1 95608 1rloA 271 2.13e+01 2fcbA 173 2.18e+01 2fcbA b.1.1.4,b.1.1.4 21781,21782 1t77A 414 2.20e+01 1txvA 452 2.22e+01 1wnyA 186 2.24e+01 1yymG 313 2.25e+01 1d8hA 311 2.31e+01 1d8iA d.63.1.1 39544 1si6X 282 2.36e+01 2cfxA 144 2.36e+01 2gefA 217 2.43e+01 1zx5A 300 2.47e+01 1ee8A 266 2.54e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1xdfA 157 2.56e+01 2erfA 209 2.57e+01 1i0rA 169 2.57e+01 1i0rA b.45.1.2 61489 2bgiA 272 2.58e+01 1zd7A 159 2.60e+01 1pvmA 184 2.67e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1sl4A 155 2.71e+01 d.169.1.1 105710 1bfg 146 2.72e+01 1bfg b.42.1.1 25485 1w6sA 599 2.73e+01 1v30A 124 2.74e+01 1rlmA 271 2.80e+01 1e19A 314 2.84e+01 1b7bA c.73.1.1 34967 2gcfA 73 2.84e+01 1r1mA 164 2.84e+01 d.79.7.1 96820 1mkmA 249 2.85e+01 a.4.5.33,d.110.2.2 79242,79243 1n3lA 372 2.88e+01 c.26.1.1 79966 1vggA 161 2.89e+01 2fe7A 166 2.93e+01 1mw9X 592 2.93e+01 e.10.1.1 91480 1z90A 469 3.00e+01 1d1gA 168 3.05e+01 1d1gA c.71.1.1 34889 3pcgA 200 3.06e+01 3pchA b.3.6.1 22647 1vkbA 161 3.07e+01 d.269.1.1 108643 1kgdA 180 3.09e+01 c.37.1.1 68582 1c7sA 858 3.10e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1yc5A 246 3.11e+01 2cwkA 160 3.35e+01 1gky 187 3.43e+01 1gky c.37.1.1 31839 1xo0A 324 3.46e+01 1wzoA 246 3.51e+01 1lr7A 74 3.53e+01 g.3.11.3,g.68.1.1 84679,84680 1twfK 120 3.53e+01 1zt3A 80 3.54e+01 1vc1A 110 3.59e+01 c.13.2.1 108493 1ex7A 186 3.63e+01 1gky c.37.1.1 59537 1gd1O 334 3.80e+01 1dssG c.2.1.3,d.81.1.1 29962,39877 1z84A 351 3.82e+01 1bdfA 235 3.90e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1t5rA 284 3.90e+01 f.6.1.1 106465 1p80A 753 3.90e+01 c.23.16.3,e.5.1.1 94337,94338 2ghrA 302 3.93e+01 1a92A 50 3.95e+01 1a92A h.4.6.1 45791 2bjrA 368 3.98e+01 1yzsA 121 3.99e+01 1uzxA 169 3.99e+01 d.20.1.2 100238 2azeA 155 4.00e+01 1xw3A 110 4.01e+01 1q79A 514 4.03e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1ksiA 642 4.10e+01 1ksiB b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1w3oA 216 4.15e+01 1v84A 253 4.17e+01 c.68.1.7 108419 1c0pA 363 4.18e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1gxuA 91 4.24e+01 d.58.10.1 76378 1c7qA 445 4.24e+01 2pgi c.80.1.2 35307 2g6fX 59 4.28e+01 1vgyA 393 4.29e+01 c.56.5.4,d.58.19.1 100620,100621 2rspA 124 4.31e+01 2rspB b.50.1.1 26771 1b7yA 350 4.31e+01 1pysA d.104.1.1 40776 1z4eA 153 4.45e+01 1tfr 305 4.52e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 2fpeA 62 4.53e+01 2fwuA 157 4.59e+01 1o8vA 134 4.60e+01 b.60.1.2 86680 2g58A 121 4.64e+01 1or0B 528 4.65e+01 1zirA 173 4.71e+01 1iooA 196 4.71e+01 d.124.1.1 71250 1bouB 302 4.75e+01 1bouB c.56.6.1 33859 1q7fA 286 4.78e+01 b.68.9.1 96036 1f2tB 148 4.84e+01 1f2tB 1ash 150 4.86e+01 1ash a.1.1.2 15622 2ae5B 528 4.87e+01 1yfsA 465 4.89e+01 2bfxA 284 4.91e+01 1zxtA 76 4.98e+01 1c1lA 136 5.12e+01 1c1lA b.29.1.3 24219 1nmeA 146 5.15e+01 c.17.1.1 85874 1i39A 225 5.16e+01 1ekeA c.55.3.1 61585 1ylnA 252 5.21e+01 2ccjA 205 5.24e+01 2f91B 35 5.28e+01 1ka1A 357 5.33e+01 e.7.1.1 68369 1vgjA 184 5.35e+01 1kqfB 294 5.40e+01 d.58.1.5,f.23.22.1 75900,75901 1ttwA 138 5.43e+01 d.198.1.1 107308 1wmaA 276 5.43e+01 1o8xA 146 5.48e+01 c.47.1.10 86681 1vppX 20 5.59e+01 1z0wA 207 5.59e+01 1uu3A 310 5.68e+01 d.144.1.7 99999 1ud9A 245 5.71e+01 d.131.1.2,d.131.1.2 107768,107769 1x0pA 143 5.83e+01 1cseI 71 5.84e+01 1egpA d.40.1.1 38559 2ffyA 358 5.84e+01 1z0sA 278 5.90e+01 1z5bA 469 5.91e+01 2chnA 716 5.94e+01 1ysjA 404 5.98e+01 1pfo 500 6.03e+01 1pfo f.9.1.1 43826 1gweA 503 6.06e+01 e.5.1.1 70667 1j98A 157 6.07e+01 1j98A d.185.1.2 62755 1efvB 255 6.07e+01 1efvB c.26.2.3 31634 1i4uA 181 6.14e+01 b.60.1.1 61732 2agyA 361 6.15e+01 1r4pB 70 6.28e+01 b.40.2.1 97026 1te0A 318 6.28e+01 1wj9A 211 6.39e+01 2bhgA 209 6.40e+01 1ouwA 152 6.46e+01 b.77.3.1 93571 1xphA 150 6.46e+01 1mkfA 382 6.53e+01 b.116.1.1 79232 2bbkH 355 6.57e+01 2bbkH b.69.2.1 27634 2gr8A 99 6.76e+01 1pmi 440 6.82e+01 1pmi b.82.1.3 28114 1xksA 450 6.84e+01 1sgwA 214 6.86e+01 c.37.1.12 105541 1ojrA 274 6.88e+01 c.74.1.1 93147 2au3A 407 6.96e+01 2a5hA 416 6.97e+01 1ufyA 122 6.99e+01 d.79.1.2 88489 1ywqA 200 7.13e+01 1r2zA 274 7.15e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1qtnA 164 7.30e+01 1pauA c.17.1.1 30999 1vheA 373 7.32e+01 b.49.3.1,c.56.5.4 100669,100670 1yz4A 160 7.37e+01 2g40A 224 7.41e+01 2bzvA 181 7.48e+01 2dg5B 190 7.54e+01 1m8uA 173 7.56e+01 b.11.1.1,b.11.1.1 91233,91234 1kt6A 183 7.57e+01 b.60.1.1 84466 1yr2A 741 7.58e+01 1ugiA 84 7.68e+01 1ugiA d.17.5.1 38125 2ai4A 119 7.73e+01 1nhkL 144 7.75e+01 1npk d.58.6.1 39142 2bvfA 459 7.78e+01 1knqA 175 7.80e+01 c.37.1.17 72786 1suwA 249 7.85e+01 e.52.1.1 106027 2a97A 439 7.90e+01 1widA 130 7.91e+01 1gz8A 299 7.99e+01 d.144.1.7 83405 2f6eA 127 8.03e+01 1kb9D 246 8.04e+01 a.3.1.3,f.23.11.1 77317,77318 1z2nX 324 8.07e+01 1jfuA 186 8.13e+01 c.47.1.10 62940 1wb9A 800 8.13e+01 1gvp 87 8.15e+01 1gvp b.40.4.7 25369 1nqeA 594 8.30e+01 f.4.3.3 86027 1ve2A 235 8.32e+01 2bswA 146 8.48e+01 1vbkA 307 8.62e+01 1bupA 386 8.63e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1zsyA 357 8.64e+01 1b8dA 164 8.66e+01 1cpcA a.1.1.3 15665 1ybdA 239 8.72e+01 1s12A 94 8.76e+01 1evlA 401 8.82e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1my7A 114 8.97e+01 b.1.18.1 79675