# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 2.84e-08 1ci0A b.45.1.1 25753 1g79A 218 3.12e-08 1ci0A b.45.1.1 25752 2fhqA 141 8.52e-08 1rfeA 162 9.72e-08 1nrgA 261 1.55e-07 b.45.1.1 80694 1vl7A 157 1.88e-06 b.45.1.1 108732 1ty9A 222 3.50e-06 2fg9A 178 3.66e-05 2aq6A 147 4.45e-04 2furA 209 7.14e-04 1w9aA 147 1.73e-03 2asfA 137 2.92e-03 1xhnA 184 1.52e-01 1ejeA 192 1.98e-01 1ejeA b.45.1.2 25757 2fcjA 119 7.90e-01 2av5A 120 8.14e-01 2fwuA 157 1.03e+00 1u09A 476 1.13e+00 e.8.1.4 107545 1flmA 122 1.26e+00 1axj b.45.1.1 25747 1bouB 302 2.39e+00 1bouB c.56.6.1 33859 2arzA 247 3.24e+00 1m8uA 173 3.28e+00 b.11.1.1,b.11.1.1 91233,91234 1s5jA 847 3.55e+00 1zirA 173 3.75e+00 1c1lA 136 4.02e+00 1c1lA b.29.1.3 24219 1vjgA 218 4.04e+00 c.23.10.6 100810 1v3vA 333 4.15e+00 b.35.1.2,c.2.1.1 108345,108346 1jalA 363 5.26e+00 c.37.1.8,d.15.10.2 84138,84139 2bv2A 83 6.44e+00 1u9cA 224 6.63e+00 1zud1 251 6.81e+00 1w1hA 151 6.90e+00 2etvA 346 8.10e+00 1cvrA 435 8.23e+00 1cvrA b.1.18.12,c.17.1.2 21949,31006 1zpwX 90 9.39e+00 1xhkA 187 9.57e+00 1y0zA 330 9.75e+00 1zybA 232 1.04e+01 2f6kA 307 1.06e+01 1hyp 80 1.10e+01 1hyp a.52.1.1 17806 1ti6B 274 1.22e+01 b.3.5.1,d.58.1.5 106976,106977 1vheA 373 1.31e+01 b.49.3.1,c.56.5.4 100669,100670 2ayuA 417 1.32e+01 1q32A 544 1.40e+01 d.136.1.3,d.136.1.3 104507,104508 1yc5A 246 1.41e+01 1is3A 135 1.44e+01 b.29.1.3 76773 1nmeA 146 1.67e+01 c.17.1.1 85874 1wekA 217 1.68e+01 1w7lA 422 1.87e+01 c.67.1.1 109226 1zd9A 188 1.89e+01 1yfsA 465 2.17e+01 1yqyA 523 2.24e+01 1r0vA 305 2.41e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1hgxA 183 2.47e+01 1tc1A c.61.1.1 34027 1amm 174 2.50e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1uxaA 194 2.62e+01 b.21.1.1 108091 2d4qA 257 2.64e+01 1f6bA 198 2.70e+01 c.37.1.8 64986 2dcnA 311 2.72e+01 1yfqA 342 2.78e+01 1fp3A 402 2.83e+01 1fp3A a.102.1.3 18842 1vqtA 213 2.86e+01 1i0rA 169 2.96e+01 1i0rA b.45.1.2 61489 1weoA 93 2.98e+01 1vc1A 110 3.00e+01 c.13.2.1 108493 1x89A 178 3.11e+01 1ye8A 178 3.19e+01 1fo0B 112 3.25e+01 1kb5B b.1.1.1 20631 1ylnA 252 3.64e+01 1mjfA 281 3.74e+01 c.66.1.17 79198 1p2xA 159 3.75e+01 a.40.1.1 104062 2bjrA 368 3.75e+01 1j57A 143 3.77e+01 d.221.1.1 77079 2b0aA 186 3.89e+01 2gqrA 237 3.92e+01 1m6jA 261 4.18e+01 c.1.1.1 78693 1j09A 468 4.22e+01 a.97.1.1,c.26.1.1 77025,77026 1jw9B 249 4.25e+01 c.111.1.1 67377 1wzaA 488 4.32e+01 1sl4A 155 4.39e+01 d.169.1.1 105710 1e5pA 151 4.53e+01 1bj7 b.60.1.1 59272 1tfr 305 4.61e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1dvpA 220 4.67e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1i6aA 219 4.77e+01 c.94.1.1 61827 1yhtA 367 4.96e+01 1fjrA 195 5.09e+01 1fjrA b.102.1.1 59855 1st9A 143 5.13e+01 c.47.1.10 98987 1itbB 315 5.18e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1e58A 249 5.29e+01 1qhfA c.60.1.1 59262 1vd6A 224 5.36e+01 1fyhB 229 5.39e+01 1jrhI b.1.2.1,b.1.2.1 22055,22056 1yixA 265 5.45e+01 2gukA 120 5.57e+01 1rz1A 161 5.63e+01 b.45.1.2 98124 1vimA 200 5.66e+01 c.80.1.3 100758 2f9sA 151 5.75e+01 1lmb3 92 5.78e+01 1lmb3 1jfuA 186 6.03e+01 c.47.1.10 62940 1pbyA 489 6.10e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 2a1fA 247 6.24e+01 2bdrA 175 6.27e+01 1pme 380 6.35e+01 1hcl d.144.1.7 41653 1uf3A 228 6.45e+01 d.159.1.6 99317 1oxkB 134 6.65e+01 c.23.1.1 93691 1umwA 237 6.66e+01 d.223.1.2,d.223.1.2 99631,99632 1ykdA 398 6.71e+01 1r6xA 395 6.78e+01 b.122.1.3,c.26.1.5 97167,97168 1bvyF 191 6.82e+01 1bvyF c.23.5.1 31207 1xipA 388 6.82e+01 2afaA 425 7.00e+01 1f74A 293 7.06e+01 1nal3 c.1.10.1 29079 1jeoA 180 7.25e+01 c.80.1.3 66611 1mvcA 240 7.25e+01 a.123.1.1 79499 2gclA 261 7.29e+01 1t77A 414 7.53e+01 1ptmA 329 7.58e+01 c.77.1.3 95104 2eveA 157 7.64e+01 1c7qA 445 7.70e+01 2pgi c.80.1.2 35307 1faoA 126 7.76e+01 1faoA b.55.1.1 26974 2f62A 161 7.98e+01 1bn8A 420 7.98e+01 1pcl b.80.1.1 28022 1zmtA 254 8.02e+01 1qzzA 374 8.05e+01 a.4.5.29,c.66.1.12 96719,96720 1cnzA 363 8.07e+01 1cnzA c.77.1.1 35061 2biiA 424 8.12e+01 1xphA 150 8.21e+01 1d1gA 168 8.39e+01 1d1gA c.71.1.1 34889 2g09A 297 8.48e+01 1fkqA 124 8.65e+01 3lzt d.2.1.2 36601 2sli 679 8.77e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1n5nA 180 8.77e+01 d.167.1.1 85336 1gxuA 91 8.83e+01 d.58.10.1 76378 1v54B 227 8.86e+01 b.6.1.2,f.17.2.1 100322,100323 1vk4A 298 8.95e+01 c.72.1.1 100850