# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 2.19e-04 1ci0A b.45.1.1 25753 1g79A 218 3.06e-04 1ci0A b.45.1.1 25752 1nrgA 261 1.37e-03 b.45.1.1 80694 1t9mA 214 4.62e-03 1ty9A 222 1.09e-02 1rfeA 162 3.30e-02 1vl7A 157 1.62e-01 b.45.1.1 108732 2fhqA 141 1.64e-01 2furA 209 3.78e-01 2av5A 120 6.36e-01 2aq6A 147 8.10e-01 1xxoA 147 1.13e+00 1w9aA 147 1.19e+00 1r6xA 395 1.50e+00 b.122.1.3,c.26.1.5 97167,97168 1cjxA 357 1.87e+00 1cjxA d.32.1.3,d.32.1.3 38516,38517 1g8fA 511 3.88e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1ld8A 382 5.37e+00 a.118.6.1 73838 1tn6A 382 5.53e+00 1mszA 86 6.97e+00 d.68.7.1 79428 2acvA 463 7.31e+00 2pvaA 345 8.00e+00 3pvaA d.153.1.3 41850 3pvaA 335 8.04e+00 3pvaA d.153.1.3 41854 1qvzA 237 8.08e+00 c.23.16.2 96453 2fcjA 119 1.07e+01 1oe4A 247 1.09e+01 c.18.1.3 86895 1rw7A 243 1.22e+01 c.23.16.2 97963 1zdrA 164 1.41e+01 2fg9A 178 1.63e+01 1xfcA 384 1.70e+01 1bdfA 235 1.76e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 2bduA 297 1.92e+01 2g09A 297 2.06e+01 1svpA 161 2.24e+01 1svpA b.47.1.3 26384 1zndA 174 2.43e+01 1uf2A 1019 2.53e+01 e.28.1.2 99289 1mup 166 2.57e+01 1mup b.60.1.1 27133 2aibA 98 2.74e+01 2aeeA 211 2.76e+01 1qy1A 174 2.79e+01 b.60.1.1 96568 1yl36 82 2.90e+01 2chnA 716 3.01e+01 1iso 416 3.06e+01 1iso c.77.1.1 35065 1gewA 356 3.13e+01 1gewA c.67.1.1 60470 1jv4A 162 3.30e+01 b.60.1.1 67343 1i06A 180 3.45e+01 1mup b.60.1.1 27131 2fnuA 375 3.47e+01 1j57A 143 3.60e+01 d.221.1.1 77079 1jw2A 72 3.68e+01 a.23.5.1 67372 2cruA 118 3.75e+01 1u7eB 154 3.78e+01 2pooA 355 3.85e+01 1qlgA b.68.3.1 27626 1u9cA 224 3.86e+01 1w1hA 151 3.90e+01 1nnhA 294 4.02e+01 d.104.1.1 92005 1i05A 180 4.02e+01 1mup b.60.1.1 27130 2cu3A 64 4.02e+01 1h6lA 353 4.02e+01 b.68.3.1 60687 1vqzA 341 4.08e+01 1jwqA 179 4.13e+01 c.56.5.6 90921 1qyiA 384 4.33e+01 c.108.1.13 96595 1akhA 61 4.41e+01 1akhA a.4.1.1 15980 1q7lA 198 4.59e+01 c.56.5.4 96044 1mjc 69 4.60e+01 1mjc b.40.4.5 25319 1knqA 175 4.90e+01 c.37.1.17 72786 1xo0A 324 4.94e+01 1x3zA 335 5.09e+01 1y7yA 74 5.11e+01 1umuA 116 5.15e+01 1umuA b.87.1.1 28382 2biiA 424 5.16e+01 1o65A 246 5.17e+01 b.58.1.2 92544 1lriA 98 5.24e+01 a.134.1.1 74223 1zhhB 242 5.27e+01 2fwkA 121 5.29e+01 1r5iD 216 5.39e+01 a.202.1.1 97091 2eshA 118 5.41e+01 1ne6A 283 5.42e+01 b.82.3.2,b.82.3.2 91831,91832 1xbrA 184 5.44e+01 1xbrA b.2.5.4 22458 1bxm 99 5.47e+01 1bxm a.134.1.1 19618 1x1gA 129 5.57e+01 1q44A 326 5.71e+01 c.37.1.5 95779 1j5sA 463 5.82e+01 c.1.9.8 71580 1e5kA 201 5.84e+01 1fr9A c.68.1.8 34578 1wdjA 187 5.85e+01 1b5fB 87 5.94e+01 1b5fB 2csgA 424 5.96e+01 1wy6A 172 5.97e+01 1zud1 251 5.99e+01 1oj7A 408 6.01e+01 e.22.1.2 103971 1kdxB 28 6.03e+01 1c3cA 429 6.13e+01 1c3cA a.127.1.1 19425 1wj9A 211 6.20e+01 1f44A 324 6.21e+01 a.60.9.1,d.163.1.1 64982,64983 1amx 180 6.24e+01 1amx b.2.3.1 22410 1wrjA 156 6.47e+01 1epwA 1290 6.51e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1s9uA 207 6.54e+01 a.184.1.1 105390 1fg7A 356 6.70e+01 1gewA c.67.1.1 59819 1qamA 244 6.80e+01 2ercA c.66.1.24 34220 1pb1A 416 6.89e+01 c.77.1.1 88014 1vor3 53 6.89e+01 1kewA 361 6.90e+01 c.2.1.2 68544 1nofA 383 6.93e+01 b.71.1.2,c.1.8.3 92020,92021 2bh9A 489 7.14e+01 1ux8A 132 7.36e+01 4crxA 322 7.38e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 1c9oA 66 7.63e+01 1mjc b.40.4.5 25325 1uuhA 159 7.71e+01 d.169.1.4 100008 1lc5A 364 7.74e+01 c.67.1.1 73827 1ru8A 232 7.85e+01 c.26.2.1 97849 1ejeA 192 8.09e+01 1ejeA b.45.1.2 25757 1d8dA 377 8.10e+01 1ft1A a.118.6.1 19185 2c78A 405 8.15e+01 1g8lA 411 8.22e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2akaA 776 8.23e+01 2cyeA 133 8.28e+01 1d2fA 390 8.33e+01 1d2fA c.67.1.3 34411 1m1hA 248 8.56e+01 b.114.1.1,d.58.42.1 78415,78416 2a7oA 112 8.79e+01 1yf2A 425 8.89e+01 1pbyA 489 8.89e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1yeyA 444 8.89e+01 1r9wA 145 8.93e+01 d.89.1.2 97264 1q8yA 373 8.94e+01 d.144.1.7 96234 2c46A 241 8.99e+01