# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 6.49e-05 1ci0A b.45.1.1 25753 1g79A 218 6.97e-05 1ci0A b.45.1.1 25752 1nrgA 261 4.18e-04 b.45.1.1 80694 2fhqA 141 6.05e-04 1ty9A 222 1.04e-03 1t9mA 214 2.17e-03 1rfeA 162 8.73e-03 1vl7A 157 1.58e-02 b.45.1.1 108732 1w9aA 147 3.40e-02 1xxoA 147 3.65e-02 2aq6A 147 3.89e-02 1r6xA 395 5.10e-01 b.122.1.3,c.26.1.5 97167,97168 2furA 209 8.61e-01 1g8fA 511 1.26e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2fg9A 178 1.59e+00 2asfA 137 2.12e+00 1flmA 122 4.61e+00 1axj b.45.1.1 25747 1z6jT 211 4.74e+00 2giyA 191 5.70e+00 2chnA 716 5.87e+00 1wqvT 218 6.74e+00 1kewA 361 8.23e+00 c.2.1.2 68544 2acvA 463 1.10e+01 1vgyA 393 1.12e+01 c.56.5.4,d.58.19.1 100620,100621 1q7lA 198 1.13e+01 c.56.5.4 96044 1d2fA 390 1.18e+01 1d2fA c.67.1.3 34411 1w1hA 151 1.18e+01 1s6lA 212 1.42e+01 1dkgA 197 1.53e+01 1dkgA b.73.1.1,h.1.9.1 27812,45626 2hft 218 1.54e+01 1boy b.1.2.1,b.1.2.1 21951,21952 1vqzA 341 1.59e+01 1j6wA 175 1.65e+01 1j98A d.185.1.2 62663 1s68A 249 1.81e+01 d.142.2.4 98591 1r55A 214 1.82e+01 1zxtA 76 1.84e+01 1ejeA 192 1.90e+01 1ejeA b.45.1.2 25757 1fljA 260 2.04e+01 2cba b.74.1.1 27954 1p42A 270 2.13e+01 d.14.1.7,d.14.1.7 87754,87755 2f96A 224 2.28e+01 1jfrA 262 2.34e+01 1jfrA c.69.1.16 34724 2adzA 178 2.69e+01 1vc1A 110 2.69e+01 c.13.2.1 108493 2arzA 247 2.70e+01 1yirA 408 2.75e+01 1vheA 373 2.82e+01 b.49.3.1,c.56.5.4 100669,100670 2etjA 250 3.12e+01 1rfmA 344 3.40e+01 c.122.1.1 97385 1umuA 116 3.70e+01 1umuA b.87.1.1 28382 2czrA 226 3.76e+01 1j5sA 463 3.88e+01 c.1.9.8 71580 1amx 180 3.91e+01 1amx b.2.3.1 22410 2a6hA 315 4.04e+01 1gqiA 708 4.24e+01 c.1.8.10,d.92.2.2 76279,76280 1vefA 395 4.26e+01 1u9cA 224 4.41e+01 1on3A 523 4.45e+01 c.14.1.4,c.14.1.4 87107,87108 1yl36 82 4.68e+01 1qa7A 217 4.85e+01 1havA b.47.1.4 26425 1v5rA 97 4.94e+01 2a1fA 247 5.13e+01 1xwl 580 5.15e+01 1xwl c.55.3.5,e.8.1.1 33708,43001 2cyeA 133 5.20e+01 1nk4A 580 5.22e+01 c.55.3.5,e.8.1.1 91923,91924 1l3sA 580 5.24e+01 c.55.3.5,e.8.1.1 84521,84522 1u4bA 580 5.26e+01 c.55.3.5,e.8.1.1 107664,107665 2av5A 120 5.29e+01 1ka1A 357 5.55e+01 e.7.1.1 68369 1vajA 214 5.61e+01 1jfuA 186 5.67e+01 c.47.1.10 62940 1r6dA 337 5.68e+01 c.2.1.2 97148 1ru8A 232 5.78e+01 c.26.2.1 97849 1ve6A 582 5.93e+01 1rw7A 243 6.04e+01 c.23.16.2 97963 2btvA 901 6.13e+01 2btvA e.28.1.1 43376 1l7mA 211 6.16e+01 c.108.1.4 73664 1di2A 69 6.22e+01 1di2A d.50.1.1 38780 1gr0A 367 6.24e+01 c.2.1.3,d.81.1.3 70379,70380 1s2wA 295 6.25e+01 c.1.12.7 98407 1pkp 150 6.41e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1qgxA 357 6.41e+01 1qgxA e.7.1.1 42973 1j97A 211 6.45e+01 1f5sA c.108.1.4 62753 1mwwA 128 6.45e+01 d.80.1.4 91483 1h4uA 265 6.54e+01 1h4uA d.22.1.2,g.3.11.5 60622,60623 2d37A 176 6.59e+01 1xhnA 184 6.68e+01 1mi8A 158 6.80e+01 b.86.1.2 91279 1wduA 245 6.85e+01 d.151.1.1 109286 1r1mA 164 6.88e+01 d.79.7.1 96820 1v72A 356 6.88e+01 1r6lA 239 7.01e+01 d.14.1.4,d.101.1.1 97153,97154 1eajA 126 7.08e+01 1f5wA b.1.1.1 59401 1jwqA 179 7.26e+01 c.56.5.6 90921 2ai4A 119 7.26e+01 1regX 122 7.32e+01 1regX d.58.27.1 39406 2fibA 269 7.41e+01 3fib d.171.1.1 42457 3fib 249 7.56e+01 3fib d.171.1.1 42455 1zm8A 259 7.62e+01 1cwvA 492 7.66e+01 1cwvA b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 2eshA 118 7.68e+01 2f6kA 307 7.82e+01 1ockA 412 7.94e+01 c.117.1.1 86802 2cw5A 255 7.94e+01 1souA 194 7.98e+01 c.124.1.6 105858 1xw4X 110 8.07e+01 1lid 131 8.17e+01 1hmt b.60.1.2 27184 1u0kA 288 8.19e+01 d.21.1.2,d.21.1.2 107547,107548 1do6A 124 8.19e+01 1do6A b.1.13.1 22361 1mxmA 254 8.25e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1pxfA 111 8.58e+01 b.40.4.4 88341 1mh9A 197 8.63e+01 c.108.1.8 79118 1r9hA 135 8.70e+01 d.26.1.1 97260 1ovnA 248 8.92e+01 a.71.1.1,c.47.1.7 93602,93603