# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1dnlA	199	6.32e-04	1ci0A	b.45.1.1	25753
1g79A	218	9.36e-04	1ci0A	b.45.1.1	25752
1nrgA	261	5.66e-03		b.45.1.1	80694
1t9mA	214	1.35e-02			
1ty9A	222	2.41e-02			
1rfeA	162	2.94e-02			
1vl7A	157	5.14e-02		b.45.1.1	108732
2furA	209	5.74e-02			
2fhqA	141	8.24e-02			
2aq6A	147	2.87e-01			
2av5A	120	6.13e-01			
1w9aA	147	7.49e-01			
1xxoA	147	7.79e-01			
1cjxA	357	5.26e+00	1cjxA	d.32.1.3,d.32.1.3	38516,38517
1r6xA	395	5.84e+00		b.122.1.3,c.26.1.5	97167,97168
1c9oA	66	8.02e+00	1mjc	b.40.4.5	25325
2aibA	98	1.00e+01			
1ld8A	382	1.06e+01		a.118.6.1	73838
1tn6A	382	1.08e+01			
1mszA	86	1.14e+01		d.68.7.1	79428
2fg9A	178	1.26e+01			
1i06A	180	1.29e+01	1mup	b.60.1.1	27131
1mup	166	1.40e+01	1mup	b.60.1.1	27133
1mjc	69	1.50e+01	1mjc	b.40.4.5	25319
1bxm	99	1.56e+01	1bxm	a.134.1.1	19618
1i05A	180	1.59e+01	1mup	b.60.1.1	27130
1k5dB	201	1.85e+01		b.55.1.3	68169
1jv4A	162	1.88e+01		b.60.1.1	67343
2acvA	463	1.92e+01			
1lriA	98	2.10e+01		a.134.1.1	74223
1flmA	122	2.16e+01	1axj	b.45.1.1	25747
1g8fA	511	2.21e+01	1g8fA	b.122.1.3,c.26.1.5,c.37.1.15	60348,60349,60350
1w1hA	151	2.24e+01			
1zdrA	164	2.47e+01			
1azpA	66	2.54e+01	1azpA	b.34.13.1	37467
1u9cA	224	2.57e+01			
1ru8A	232	2.66e+01		c.26.2.1	97849
1tueA	212	2.68e+01		c.37.1.20	107323
1v05A	96	2.74e+01			
1qy1A	174	2.78e+01		b.60.1.1	96568
1whrA	124	2.97e+01			
1cwvA	492	2.97e+01	1cwvA	b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3	22373,22374,22375,22376,42442
1fp2A	352	3.01e+01	1fpxA	a.4.5.29,c.66.1.12	59941,59942
1jyhA	157	3.30e+01		d.60.1.3	71956
1xfcA	384	3.32e+01			
1kewA	361	3.61e+01		c.2.1.2	68544
1umuA	116	3.71e+01	1umuA	b.87.1.1	28382
2aefA	234	3.87e+01			
2fcjA	119	3.89e+01			
1oe8A	211	3.93e+01		a.45.1.1,c.47.1.5	86905,86906
1ej2A	181	4.08e+01	1f9aA	c.26.1.3	59414
2eshA	118	4.44e+01			
2asuB	234	4.46e+01			
2akaA	776	4.51e+01			
1u2hA	99	4.53e+01			
1zud1	251	4.55e+01			
2pooA	355	4.56e+01	1qlgA	b.68.3.1	27626
1rw7A	243	4.74e+01		c.23.16.2	97963
1m8jA	181	4.74e+01		c.26.1.3	84875
2aenA	164	4.75e+01			
1qvzA	237	5.05e+01		c.23.16.2	96453
2bduA	297	5.14e+01			
2czrA	226	5.30e+01			
1zthA	258	5.34e+01			
1h6lA	353	5.44e+01		b.68.3.1	60687
1xuvA	178	5.49e+01			
2givA	295	5.62e+01			
2g09A	297	5.65e+01			
1zndA	174	5.70e+01			
1j57A	143	5.74e+01		d.221.1.1	77079
1xyiA	66	6.05e+01			
2d13A	227	6.10e+01			
1hw7A	255	6.21e+01	1i7fA	d.193.1.1	61297
1u2kA	309	6.49e+01			
1wdcC	156	6.60e+01	1wdcC	a.39.1.5	17317
1wy6A	172	6.61e+01			
2adzA	178	6.66e+01			
1q44A	326	6.76e+01		c.37.1.5	95779
2cyeA	133	7.03e+01			
1u5kA	244	7.03e+01			
1q7lA	198	7.13e+01		c.56.5.4	96044
2biiA	424	7.23e+01			
1mf7A	194	7.25e+01		c.62.1.1	84937
1ux8A	132	7.45e+01			
1dfmA	223	7.49e+01	1d2iA	c.52.1.5	33295
1ifrA	121	7.59e+01		b.1.16.1	71203
1pbyA	489	7.67e+01		a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	94417,94418,94419,94420,94421
1yg2A	179	7.70e+01			
2f06A	144	7.78e+01			
1w5tA	412	7.81e+01			
1yl36	82	7.97e+01			
1b5fB	87	8.08e+01	1b5fB		
1f44A	324	8.16e+01		a.60.9.1,d.163.1.1	64982,64983
2c46A	241	8.28e+01			
1y7yA	74	8.46e+01			
1kdxB	28	8.52e+01			
1c8cA	64	8.58e+01	1azpA	b.34.13.1	59084
1nnhA	294	8.58e+01		d.104.1.1	92005
1bdfA	235	8.60e+01	1bdfA	d.74.3.1,d.181.1.1	39727,42602
1tkiA	321	8.67e+01	1tkiA	d.144.1.7	41638
1y9uA	323	8.82e+01			
1xo0A	324	8.90e+01