Best Alignments for T0330

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1rkbA/T0330-1rkbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rkbA/T0330-1rkbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8116e+005.92e-04
1zljA/T0330-1zljA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zljA/T0330-1zljA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8534e+006.24e-04
1vkeA/T0330-1vkeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vkeA/T0330-1vkeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6385e+001.28e-10 a.152.1.2
1b8zA/T0330-1b8zA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b8zA/T0330-1b8zA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2190e+008.20e-06 1huuA a.55.1.1
1ibvB/T0330-1ibvB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ibvB/T0330-1ibvB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2886e+003.21e-03
2fexA/T0330-2fexA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fexA/T0330-2fexA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3709e+005.45e-04
1s69A/T0330-1s69A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1s69A/T0330-1s69A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5681e+009.58e-07 a.1.1.1
2au5A/T0330-2au5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2au5A/T0330-2au5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5684e+002.78e-03
1bw6A/T0330-1bw6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1bw6A/T0330-1bw6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6537e+004.20e+00 1bw6A a.4.1.7
1a23/T0330-1a23-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a23/T0330-1a23-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1822e+004.77e-13 1fvkA c.47.1.13

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001