# TARGET T0330 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0330.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 12 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 L 0.001 0.024 0.794 0.001 0.009 0.029 0.001 0.002 0.021 0.047 0.014 0.026 0.030 2 K 0.001 0.069 0.789 0.002 0.010 0.019 0.001 0.001 0.028 0.019 0.018 0.007 0.035 3 V 0.004 0.031 0.600 0.002 0.040 0.067 0.001 0.002 0.020 0.114 0.081 0.017 0.021 4 E 0.001 0.007 0.322 0.003 0.045 0.095 0.001 0.001 0.010 0.285 0.214 0.005 0.011 5 S 0.001 0.013 0.249 0.001 0.075 0.310 0.001 0.001 0.006 0.182 0.147 0.003 0.012 6 M 0.001 0.012 0.110 0.001 0.039 0.649 0.001 0.001 0.002 0.080 0.098 0.004 0.004 7 N 0.001 0.007 0.130 0.001 0.024 0.698 0.001 0.001 0.003 0.052 0.081 0.001 0.005 8 R 0.001 0.001 0.013 0.001 0.010 0.951 0.001 0.001 0.001 0.009 0.015 0.001 0.001 9 R 0.001 0.001 0.003 0.001 0.006 0.975 0.001 0.001 0.001 0.004 0.011 0.001 0.001 10 V 0.001 0.001 0.003 0.001 0.004 0.981 0.001 0.001 0.001 0.002 0.008 0.001 0.001 11 L 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 12 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 D 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 14 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 15 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 16 I 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.007 0.001 0.001 17 E 0.001 0.001 0.001 0.001 0.002 0.946 0.001 0.001 0.001 0.001 0.049 0.001 0.001 18 V 0.001 0.001 0.009 0.001 0.006 0.908 0.001 0.001 0.001 0.016 0.059 0.001 0.001 19 Y 0.001 0.006 0.025 0.001 0.011 0.767 0.001 0.001 0.007 0.025 0.153 0.002 0.003 20 G 0.001 0.002 0.175 0.002 0.025 0.212 0.001 0.001 0.004 0.075 0.499 0.001 0.004 21 T 0.001 0.018 0.554 0.004 0.025 0.042 0.001 0.001 0.008 0.243 0.083 0.008 0.015 22 E 0.002 0.063 0.373 0.006 0.058 0.029 0.001 0.001 0.025 0.164 0.168 0.040 0.070 23 G 0.004 0.043 0.315 0.003 0.052 0.024 0.003 0.001 0.015 0.265 0.205 0.029 0.040 24 S 0.001 0.031 0.534 0.006 0.040 0.022 0.001 0.001 0.015 0.230 0.090 0.007 0.023 25 T 0.001 0.012 0.200 0.007 0.145 0.051 0.001 0.001 0.008 0.236 0.314 0.005 0.020 26 G 0.001 0.008 0.120 0.008 0.159 0.061 0.001 0.002 0.006 0.179 0.441 0.010 0.006 27 S 0.003 0.021 0.258 0.005 0.155 0.062 0.001 0.002 0.010 0.224 0.214 0.011 0.034 28 H 0.006 0.055 0.443 0.004 0.043 0.060 0.001 0.002 0.015 0.213 0.067 0.041 0.050 29 D 0.006 0.055 0.415 0.015 0.062 0.059 0.001 0.002 0.008 0.150 0.153 0.019 0.055 30 F 0.010 0.044 0.316 0.020 0.095 0.066 0.001 0.001 0.006 0.152 0.230 0.026 0.032 31 S 0.007 0.027 0.249 0.005 0.106 0.070 0.001 0.001 0.004 0.156 0.329 0.014 0.030 32 G 0.005 0.019 0.222 0.003 0.088 0.076 0.001 0.001 0.004 0.220 0.332 0.011 0.019 33 K 0.004 0.015 0.276 0.002 0.061 0.253 0.001 0.001 0.003 0.196 0.160 0.010 0.019 34 M 0.004 0.026 0.186 0.004 0.030 0.490 0.001 0.001 0.004 0.117 0.111 0.006 0.020 35 D 0.003 0.009 0.151 0.004 0.018 0.665 0.001 0.001 0.004 0.090 0.033 0.010 0.010 36 G 0.002 0.002 0.032 0.002 0.016 0.905 0.001 0.001 0.002 0.014 0.016 0.001 0.006 37 A 0.006 0.002 0.009 0.001 0.016 0.934 0.002 0.001 0.003 0.006 0.014 0.003 0.003 38 I 0.007 0.003 0.006 0.001 0.009 0.940 0.004 0.002 0.005 0.003 0.015 0.002 0.005 39 I 0.010 0.001 0.006 0.001 0.005 0.945 0.004 0.002 0.005 0.002 0.014 0.002 0.005 40 Y 0.004 0.001 0.008 0.001 0.002 0.969 0.001 0.001 0.002 0.003 0.005 0.002 0.002 41 E 0.002 0.001 0.005 0.001 0.003 0.977 0.001 0.001 0.001 0.002 0.005 0.001 0.003 42 V 0.002 0.001 0.003 0.001 0.003 0.977 0.001 0.001 0.001 0.003 0.007 0.001 0.001 43 L 0.001 0.001 0.003 0.001 0.007 0.969 0.001 0.001 0.001 0.002 0.015 0.001 0.001 44 S 0.001 0.001 0.005 0.001 0.024 0.897 0.001 0.001 0.001 0.004 0.066 0.001 0.001 45 N 0.001 0.001 0.012 0.001 0.069 0.618 0.001 0.001 0.001 0.018 0.280 0.001 0.001 46 V 0.001 0.001 0.027 0.001 0.043 0.206 0.001 0.001 0.001 0.122 0.599 0.001 0.001 47 G 0.001 0.004 0.106 0.001 0.013 0.034 0.001 0.001 0.002 0.095 0.744 0.001 0.001 48 L 0.001 0.030 0.753 0.001 0.001 0.007 0.001 0.001 0.003 0.191 0.012 0.001 0.002 49 E 0.001 0.011 0.958 0.001 0.001 0.003 0.001 0.001 0.001 0.022 0.001 0.001 0.002 50 R 0.001 0.001 0.027 0.001 0.159 0.687 0.001 0.001 0.001 0.014 0.112 0.001 0.001 51 A 0.001 0.001 0.007 0.001 0.186 0.685 0.001 0.001 0.001 0.012 0.109 0.001 0.001 52 E 0.001 0.001 0.013 0.001 0.206 0.738 0.001 0.001 0.001 0.012 0.029 0.001 0.001 53 I 0.001 0.003 0.017 0.001 0.018 0.933 0.001 0.001 0.002 0.010 0.016 0.001 0.001 54 A 0.001 0.001 0.005 0.001 0.042 0.907 0.001 0.001 0.001 0.004 0.041 0.001 0.001 55 D 0.001 0.001 0.005 0.001 0.032 0.822 0.001 0.001 0.001 0.007 0.132 0.001 0.001 56 K 0.001 0.001 0.018 0.001 0.018 0.881 0.001 0.001 0.001 0.008 0.073 0.001 0.001 57 F 0.001 0.001 0.025 0.001 0.002 0.929 0.001 0.001 0.001 0.033 0.010 0.001 0.001 58 D 0.001 0.001 0.001 0.001 0.002 0.987 0.001 0.001 0.001 0.001 0.010 0.001 0.001 59 K 0.001 0.001 0.001 0.001 0.002 0.991 0.001 0.001 0.001 0.002 0.005 0.001 0.001 60 A 0.001 0.001 0.002 0.001 0.002 0.992 0.001 0.001 0.001 0.001 0.003 0.001 0.001 61 K 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 62 E 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 63 T 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.009 0.001 0.001 64 Y 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 65 I 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 66 A 0.001 0.001 0.001 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.008 0.001 0.001 67 L 0.001 0.001 0.001 0.001 0.002 0.977 0.001 0.001 0.001 0.002 0.017 0.001 0.001 68 F 0.001 0.001 0.008 0.001 0.004 0.961 0.001 0.001 0.001 0.007 0.019 0.001 0.001 69 R 0.001 0.001 0.008 0.001 0.018 0.943 0.001 0.001 0.001 0.002 0.027 0.001 0.001 70 E 0.001 0.001 0.009 0.001 0.022 0.866 0.001 0.001 0.001 0.017 0.084 0.001 0.001 71 R 0.001 0.001 0.031 0.001 0.020 0.543 0.001 0.001 0.001 0.043 0.360 0.001 0.001 72 A 0.001 0.022 0.353 0.001 0.008 0.323 0.001 0.001 0.001 0.189 0.100 0.001 0.004 73 R 0.001 0.009 0.843 0.001 0.008 0.045 0.001 0.001 0.001 0.079 0.011 0.001 0.002 74 R 0.001 0.001 0.063 0.001 0.539 0.226 0.001 0.001 0.001 0.036 0.133 0.001 0.001 75 E 0.001 0.001 0.015 0.001 0.558 0.167 0.001 0.001 0.001 0.049 0.207 0.001 0.001 76 D 0.001 0.005 0.071 0.001 0.511 0.163 0.001 0.001 0.004 0.061 0.176 0.003 0.005 77 I 0.005 0.055 0.443 0.001 0.028 0.131 0.005 0.001 0.065 0.089 0.093 0.014 0.070 78 T 0.004 0.040 0.763 0.002 0.004 0.025 0.004 0.001 0.051 0.009 0.022 0.034 0.041 79 L 0.001 0.006 0.936 0.001 0.002 0.013 0.001 0.001 0.007 0.006 0.002 0.004 0.023