# TARGET T0330 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0330.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 7.57999 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 L 0.045 0.406 0.409 0.037 0.049 0.031 0.005 0.001 0.015 0.001 0.001 2 K 0.026 0.445 0.283 0.020 0.042 0.121 0.012 0.001 0.046 0.002 0.001 3 V 0.286 0.361 0.176 0.069 0.023 0.048 0.004 0.001 0.031 0.001 0.001 4 E 0.653 0.080 0.073 0.124 0.026 0.010 0.013 0.004 0.009 0.008 0.001 5 S 0.511 0.072 0.083 0.139 0.076 0.023 0.052 0.019 0.012 0.011 0.002 6 M 0.819 0.045 0.060 0.053 0.008 0.006 0.004 0.001 0.003 0.001 0.001 7 N 0.725 0.023 0.082 0.046 0.007 0.067 0.012 0.003 0.032 0.003 0.001 8 R 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 R 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 V 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 D 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 A 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 L 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 I 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 E 0.989 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 V 0.949 0.004 0.002 0.042 0.001 0.001 0.001 0.001 0.002 0.001 0.001 19 Y 0.365 0.021 0.026 0.540 0.003 0.005 0.022 0.002 0.015 0.001 0.001 20 G 0.158 0.007 0.080 0.042 0.057 0.006 0.099 0.404 0.001 0.147 0.001 21 T 0.379 0.185 0.127 0.233 0.041 0.016 0.003 0.002 0.012 0.003 0.001 22 E 0.217 0.108 0.217 0.287 0.061 0.044 0.025 0.008 0.024 0.009 0.001 23 G 0.132 0.088 0.228 0.097 0.251 0.013 0.022 0.057 0.007 0.104 0.001 24 S 0.054 0.205 0.358 0.069 0.121 0.084 0.022 0.004 0.071 0.008 0.003 25 T 0.434 0.086 0.166 0.210 0.042 0.017 0.019 0.010 0.008 0.004 0.005 26 G 0.265 0.053 0.105 0.091 0.150 0.006 0.032 0.169 0.005 0.124 0.001 27 S 0.205 0.224 0.181 0.251 0.069 0.028 0.013 0.005 0.018 0.003 0.003 28 H 0.091 0.327 0.227 0.087 0.107 0.050 0.042 0.006 0.054 0.008 0.001 29 D 0.159 0.122 0.402 0.110 0.037 0.099 0.027 0.005 0.032 0.007 0.002 30 F 0.426 0.102 0.060 0.245 0.039 0.028 0.053 0.020 0.019 0.007 0.001 31 S 0.278 0.108 0.146 0.308 0.042 0.012 0.066 0.010 0.023 0.007 0.001 32 G 0.117 0.013 0.065 0.035 0.088 0.003 0.058 0.449 0.001 0.168 0.001 33 K 0.394 0.196 0.196 0.117 0.036 0.027 0.011 0.004 0.012 0.006 0.001 34 M 0.377 0.213 0.191 0.109 0.029 0.035 0.013 0.003 0.019 0.008 0.001 35 D 0.386 0.084 0.296 0.041 0.032 0.078 0.022 0.001 0.052 0.007 0.001 36 G 0.966 0.001 0.005 0.018 0.001 0.001 0.002 0.005 0.001 0.001 0.001 37 A 0.973 0.004 0.005 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 I 0.987 0.004 0.003 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 I 0.990 0.003 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 Y 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 E 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 V 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 L 0.993 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 S 0.991 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 N 0.941 0.003 0.005 0.045 0.001 0.001 0.003 0.001 0.001 0.001 0.001 46 V 0.328 0.003 0.009 0.658 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 G 0.016 0.001 0.003 0.013 0.002 0.001 0.259 0.669 0.002 0.034 0.001 48 L 0.029 0.131 0.744 0.024 0.015 0.044 0.003 0.001 0.008 0.001 0.001 49 E 0.024 0.071 0.801 0.008 0.013 0.069 0.001 0.001 0.009 0.003 0.001 50 R 0.963 0.005 0.012 0.013 0.002 0.002 0.001 0.001 0.001 0.001 0.001 51 A 0.977 0.001 0.003 0.015 0.001 0.001 0.001 0.002 0.001 0.001 0.001 52 E 0.966 0.001 0.003 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 I 0.955 0.002 0.003 0.037 0.001 0.002 0.001 0.001 0.001 0.001 0.001 54 A 0.991 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 D 0.978 0.001 0.002 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 K 0.864 0.001 0.001 0.131 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 F 0.793 0.017 0.038 0.127 0.002 0.008 0.005 0.002 0.006 0.001 0.001 58 D 0.965 0.001 0.004 0.008 0.001 0.004 0.016 0.001 0.001 0.001 0.001 59 K 0.974 0.002 0.002 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 A 0.962 0.002 0.004 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 K 0.994 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 E 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 T 0.993 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 Y 0.993 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 I 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 L 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 F 0.977 0.002 0.002 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 R 0.965 0.003 0.004 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 E 0.939 0.005 0.017 0.035 0.002 0.001 0.001 0.001 0.001 0.001 0.001 71 R 0.406 0.005 0.014 0.540 0.002 0.006 0.017 0.003 0.007 0.001 0.001 72 A 0.112 0.120 0.573 0.090 0.023 0.039 0.013 0.005 0.023 0.002 0.001 73 R 0.054 0.203 0.529 0.028 0.065 0.076 0.007 0.002 0.026 0.010 0.001 74 R 0.822 0.023 0.065 0.064 0.006 0.007 0.004 0.003 0.004 0.002 0.001 75 E 0.755 0.025 0.060 0.133 0.009 0.005 0.006 0.003 0.003 0.002 0.001 76 D 0.234 0.030 0.068 0.554 0.009 0.046 0.035 0.002 0.021 0.001 0.001 77 I 0.054 0.465 0.325 0.041 0.032 0.036 0.006 0.001 0.038 0.001 0.001 78 T 0.043 0.307 0.401 0.024 0.007 0.142 0.008 0.001 0.067 0.001 0.001 79 L 0.093 0.272 0.487 0.041 0.016 0.058 0.004 0.001 0.024 0.002 0.001