Best Alignments for T0330

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1hlvA/T0330-1hlvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hlvA/T0330-1hlvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1691e-012.98e-01 a.4.1.7
a.4.1.7
1s69A/T0330-1s69A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1s69A/T0330-1s69A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.5856e-012.01e-08 a.1.1.1
1w2yA/T0330-1w2yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w2yA/T0330-1w2yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3092e+002.41e-01 a.204.1.1
1b8zA/T0330-1b8zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b8zA/T0330-1b8zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1466e+002.90e-05 1huuA a.55.1.1
1whzA/T0330-1whzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1whzA/T0330-1whzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5436e+003.65e-03
1zljA/T0330-1zljA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zljA/T0330-1zljA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7893e+001.86e-05
1rkbA/T0330-1rkbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rkbA/T0330-1rkbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.9712e+004.42e-03
2cg4A/T0330-2cg4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cg4A/T0330-2cg4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6978e+005.35e-07
1ywfA/T0330-1ywfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ywfA/T0330-1ywfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.7739e+006.09e-01
2cfxA/T0330-2cfxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cfxA/T0330-2cfxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.0558e+004.89e-03

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001