# TARGET T0330 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0330.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.54411 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 L 0.001 0.005 0.917 0.002 0.001 0.005 0.001 0.001 0.003 0.024 0.003 0.023 0.016 2 K 0.002 0.044 0.817 0.001 0.002 0.014 0.001 0.001 0.010 0.010 0.005 0.022 0.072 3 V 0.006 0.030 0.491 0.012 0.046 0.169 0.003 0.002 0.014 0.057 0.045 0.019 0.106 4 E 0.004 0.004 0.264 0.019 0.097 0.328 0.001 0.001 0.008 0.144 0.073 0.038 0.019 5 S 0.002 0.003 0.167 0.001 0.124 0.490 0.001 0.001 0.008 0.100 0.063 0.008 0.033 6 M 0.002 0.010 0.090 0.001 0.044 0.743 0.001 0.001 0.007 0.030 0.045 0.010 0.015 7 N 0.002 0.005 0.083 0.003 0.013 0.807 0.001 0.001 0.004 0.027 0.043 0.005 0.007 8 R 0.001 0.001 0.017 0.001 0.004 0.949 0.001 0.001 0.001 0.013 0.014 0.001 0.001 9 R 0.001 0.001 0.011 0.001 0.002 0.970 0.001 0.001 0.001 0.006 0.007 0.001 0.001 10 V 0.001 0.001 0.007 0.001 0.002 0.978 0.001 0.001 0.001 0.003 0.005 0.001 0.002 11 L 0.001 0.001 0.005 0.001 0.001 0.986 0.001 0.001 0.001 0.002 0.004 0.001 0.001 12 A 0.001 0.001 0.005 0.001 0.002 0.982 0.001 0.001 0.001 0.002 0.007 0.001 0.001 13 D 0.001 0.001 0.004 0.001 0.001 0.983 0.001 0.001 0.001 0.003 0.009 0.001 0.001 14 A 0.001 0.001 0.002 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.008 0.001 0.001 15 L 0.001 0.001 0.003 0.001 0.001 0.987 0.001 0.001 0.001 0.002 0.006 0.001 0.001 16 I 0.001 0.001 0.003 0.001 0.003 0.978 0.001 0.001 0.001 0.003 0.013 0.001 0.001 17 E 0.001 0.001 0.002 0.001 0.008 0.956 0.001 0.001 0.001 0.003 0.031 0.001 0.001 18 V 0.001 0.001 0.004 0.001 0.007 0.924 0.001 0.001 0.001 0.005 0.059 0.001 0.001 19 Y 0.001 0.007 0.027 0.001 0.007 0.657 0.001 0.002 0.003 0.042 0.251 0.001 0.002 20 G 0.001 0.013 0.299 0.004 0.006 0.124 0.001 0.001 0.005 0.246 0.289 0.005 0.006 21 T 0.001 0.012 0.657 0.002 0.006 0.020 0.001 0.001 0.006 0.226 0.054 0.005 0.012 22 E 0.001 0.025 0.248 0.005 0.043 0.035 0.001 0.001 0.008 0.281 0.334 0.007 0.013 23 G 0.003 0.031 0.243 0.004 0.039 0.028 0.001 0.001 0.010 0.357 0.244 0.018 0.020 24 S 0.004 0.055 0.456 0.006 0.042 0.028 0.002 0.001 0.012 0.219 0.116 0.019 0.040 25 T 0.006 0.032 0.394 0.005 0.070 0.046 0.001 0.001 0.006 0.137 0.250 0.012 0.040 26 G 0.011 0.025 0.301 0.006 0.062 0.049 0.002 0.001 0.006 0.209 0.261 0.042 0.028 27 S 0.013 0.031 0.375 0.007 0.056 0.043 0.002 0.001 0.005 0.189 0.196 0.013 0.069 28 H 0.016 0.058 0.396 0.005 0.028 0.044 0.003 0.001 0.006 0.206 0.101 0.088 0.047 29 D 0.009 0.033 0.492 0.003 0.026 0.045 0.001 0.001 0.002 0.152 0.139 0.018 0.081 30 F 0.009 0.034 0.284 0.005 0.074 0.063 0.001 0.001 0.001 0.160 0.296 0.040 0.033 31 S 0.009 0.020 0.209 0.004 0.096 0.127 0.001 0.001 0.001 0.121 0.359 0.012 0.040 32 G 0.010 0.018 0.195 0.002 0.086 0.133 0.001 0.001 0.001 0.291 0.208 0.033 0.022 33 K 0.008 0.016 0.245 0.002 0.062 0.241 0.001 0.001 0.001 0.119 0.259 0.004 0.042 34 M 0.018 0.035 0.188 0.001 0.033 0.350 0.002 0.001 0.001 0.120 0.191 0.038 0.021 35 D 0.002 0.009 0.371 0.007 0.012 0.260 0.001 0.001 0.001 0.131 0.186 0.005 0.015 36 G 0.001 0.001 0.087 0.006 0.022 0.369 0.001 0.001 0.001 0.202 0.306 0.003 0.002 37 A 0.021 0.013 0.100 0.001 0.010 0.642 0.006 0.004 0.010 0.059 0.074 0.020 0.041 38 I 0.083 0.022 0.047 0.001 0.009 0.651 0.025 0.009 0.028 0.016 0.014 0.020 0.075 39 I 0.065 0.003 0.019 0.004 0.007 0.828 0.013 0.006 0.011 0.003 0.006 0.017 0.017 40 Y 0.044 0.001 0.024 0.010 0.017 0.841 0.009 0.003 0.005 0.005 0.007 0.017 0.018 41 E 0.034 0.002 0.016 0.001 0.022 0.839 0.006 0.002 0.010 0.004 0.011 0.022 0.031 42 V 0.024 0.004 0.024 0.005 0.027 0.824 0.004 0.001 0.005 0.013 0.023 0.013 0.034 43 L 0.011 0.005 0.019 0.004 0.025 0.817 0.002 0.003 0.005 0.016 0.072 0.006 0.015 44 S 0.003 0.003 0.030 0.006 0.036 0.685 0.001 0.001 0.002 0.053 0.166 0.005 0.007 45 N 0.001 0.001 0.066 0.001 0.081 0.535 0.001 0.001 0.001 0.039 0.269 0.001 0.005 46 V 0.001 0.003 0.055 0.001 0.061 0.313 0.001 0.001 0.001 0.085 0.477 0.002 0.002 47 G 0.001 0.007 0.135 0.001 0.030 0.139 0.001 0.001 0.002 0.084 0.594 0.003 0.005 48 L 0.003 0.021 0.508 0.002 0.025 0.130 0.001 0.001 0.006 0.169 0.097 0.014 0.022 49 E 0.005 0.024 0.541 0.001 0.029 0.174 0.001 0.001 0.008 0.103 0.058 0.024 0.034 50 R 0.002 0.003 0.040 0.001 0.074 0.801 0.001 0.001 0.002 0.020 0.043 0.002 0.011 51 A 0.001 0.001 0.025 0.001 0.042 0.888 0.001 0.001 0.001 0.011 0.029 0.002 0.001 52 E 0.001 0.001 0.019 0.001 0.053 0.886 0.001 0.001 0.001 0.008 0.028 0.001 0.003 53 I 0.001 0.001 0.016 0.001 0.024 0.932 0.001 0.001 0.001 0.005 0.018 0.001 0.002 54 A 0.001 0.001 0.015 0.001 0.015 0.945 0.001 0.001 0.001 0.006 0.017 0.001 0.001 55 D 0.001 0.001 0.008 0.001 0.010 0.947 0.001 0.001 0.001 0.007 0.026 0.001 0.001 56 K 0.001 0.001 0.009 0.001 0.010 0.945 0.001 0.001 0.001 0.004 0.031 0.001 0.001 57 F 0.001 0.001 0.032 0.001 0.004 0.937 0.001 0.001 0.001 0.014 0.011 0.001 0.001 58 D 0.001 0.001 0.007 0.001 0.003 0.975 0.001 0.001 0.001 0.004 0.011 0.001 0.001 59 K 0.001 0.001 0.003 0.001 0.002 0.981 0.001 0.001 0.001 0.001 0.012 0.001 0.001 60 A 0.001 0.001 0.005 0.001 0.003 0.981 0.001 0.001 0.001 0.002 0.009 0.001 0.001 61 K 0.001 0.001 0.004 0.001 0.002 0.984 0.001 0.001 0.001 0.003 0.006 0.001 0.001 62 E 0.001 0.001 0.004 0.001 0.003 0.981 0.001 0.001 0.001 0.002 0.009 0.001 0.001 63 T 0.001 0.001 0.002 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.006 0.001 0.001 64 Y 0.001 0.001 0.002 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 65 I 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 66 A 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 67 L 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 68 F 0.001 0.001 0.003 0.001 0.001 0.985 0.001 0.001 0.001 0.002 0.007 0.001 0.001 69 R 0.001 0.001 0.009 0.001 0.006 0.945 0.001 0.001 0.001 0.007 0.029 0.001 0.001 70 E 0.001 0.001 0.011 0.001 0.012 0.868 0.001 0.001 0.001 0.015 0.091 0.001 0.001 71 R 0.001 0.001 0.035 0.001 0.018 0.716 0.001 0.001 0.001 0.023 0.204 0.001 0.001 72 A 0.001 0.013 0.257 0.001 0.014 0.478 0.001 0.001 0.003 0.100 0.125 0.003 0.005 73 R 0.001 0.022 0.582 0.002 0.019 0.216 0.001 0.001 0.005 0.068 0.065 0.004 0.015 74 R 0.001 0.004 0.157 0.003 0.165 0.418 0.001 0.001 0.003 0.057 0.181 0.003 0.008 75 E 0.001 0.001 0.035 0.004 0.167 0.161 0.001 0.001 0.002 0.102 0.520 0.004 0.003 76 D 0.003 0.005 0.102 0.011 0.149 0.099 0.001 0.001 0.011 0.112 0.481 0.005 0.020 77 I 0.015 0.067 0.451 0.003 0.015 0.051 0.010 0.007 0.090 0.081 0.025 0.106 0.080 78 T 0.010 0.052 0.651 0.005 0.004 0.022 0.006 0.007 0.074 0.021 0.016 0.024 0.107 79 L 0.003 0.015 0.785 0.008 0.023 0.021 0.001 0.002 0.024 0.046 0.021 0.014 0.037