a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0330
- gi|71482043|ref|ZP_00661744.1|_15:93 Haloacid dehalogenase-like hydrolase [Prosthecochloris vibrioformis DSM 265]
- gi|71283191|gb|EAO15019.1| Haloacid dehalogenase-like hydrolase [Prosthecochloris vibrioformis DSM 265]
- gi|21647718|gb|AAM72932.1|_15:93 hydrolase, haloacid dehalogenase-like family [Chlorobium tepidum TLS]
- gi|21674525|ref|NP_662590.1| hydrolase, haloacid dehalogenase-like family [Chlorobium tepidum TLS]
- gi|68551962|ref|ZP_00591355.1|_15:93 Haloacid dehalogenase-like hydrolase [Prosthecochloris aestuarii DSM 271]
- gi|68241085|gb|EAN23353.1| Haloacid dehalogenase-like hydrolase [Prosthecochloris aestuarii DSM 271]
- gi|67934830|ref|ZP_00527856.1|_15:93 Haloacid dehalogenase-like hydrolase [Chlorobium phaeobacteroides DSM 266]
- gi|67776323|gb|EAM35983.1| Haloacid dehalogenase-like hydrolase [Chlorobium phaeobacteroides DSM 266]
- gi|67919418|ref|ZP_00512996.1|_15:93 Haloacid dehalogenase-like hydrolase [Chlorobium limicola DSM 245]
- gi|67782957|gb|EAM42358.1| Haloacid dehalogenase-like hydrolase [Chlorobium limicola DSM 245]
- gi|78167434|gb|ABB24532.1|_15:93 hydrolase, haloacid dehalogenase-like family [Pelodictyon luteolum DSM 273]
- gi|78187532|ref|YP_375575.1| hydrolase, haloacid dehalogenase-like family [Pelodictyon luteolum DSM 273]
- gi|68548819|ref|ZP_00588288.1|_15:93 Haloacid dehalogenase-like hydrolase [Pelodictyon phaeoclathratiforme BU-1]
- gi|68244377|gb|EAN26569.1| Haloacid dehalogenase-like hydrolase [Pelodictyon phaeoclathratiforme BU-1]
- gi|67938065|ref|ZP_00530595.1|_15:93 Haloacid dehalogenase-like hydrolase [Chlorobium phaeobacteroides BS1]
- gi|67915926|gb|EAM65244.1| Haloacid dehalogenase-like hydrolase [Chlorobium phaeobacteroides BS1]
- gi|78170595|gb|ABB27691.1|_15:93 hydrolase, haloacid dehalogenase-like family [Chlorobium chlorochromatii CaD3]
- gi|78188396|ref|YP_378734.1| hydrolase, haloacid dehalogenase-like family [Chlorobium chlorochromatii CaD3]

                 10        20        30        40        50        60  
                 |         |         |         |         |         |  
   1 ...LKVESMNRRVLADALIEVYGTEGSTGSHDFSGKMDGAIIYEVLSNVGLERAEIADKFDKAKE
   2 gtlLSVGSINRRVLCDALREVYGTEGTACSCNFAGKMDSGIIYEALRPAGLDDEEIGRKFNQARQ
   3 gtlLKVESMNRRVLADALIEVYGTEGSTGSHDFSGKMDGAIIYEVLSNVGLERAEIADKFDKAKE
   4 gtlLTVGNINRQTLIDALIEVYDTEGSARQHNFAGKMDSVIIYEVLQSTGLTDKEIALGFEQVKQ
   5 gtlLKVGNINRQVLADALMAVYGTEGNVRHHDFSGKMDNRIIYEVLQHVGLSLSAISEKFDAVKA
   6 gtlLRIGCINRQILINALKEIYGTEGSAGHHDFSGKMDSSIIYEVLSDTELEQHEIEAKFDAVKQ
   7 gtlLNVGPVNRRVIQDALLEVYGTEGTAATHSFAGRMDNVIIHEVLEDTGLTRTEIEAKFERAKQ
   8 gtlLSVNKINRSVLVDALTEVYGTAGSAGTHNFAGKMDSTIFYEVLRNAGLSEGDIAAKFELAKK
   9 gtlLLASNTNRQILIDALMAVYGTEGNARSYNFAGKMDSVIIHDVLKHAGLKDKHISEKFTTIKN
  10 gtlLSMTSANRRILADALLAVYGTAGSSYTHNFAGKMDSAIIYEVLAADGLTRKEVASRFDLAKE


            70            
            |            
   1 TYIALFRERARREDITL...
   2 TYCDLFRQHASLSDITLmag
   3 TYIALFRERARREDITLleg
   4 TYIELFRQQAKADDIILmng
   5 TYIDMFRKNTTPDDVRLleg
   6 SYIRRFRAETRSSDITLmag
   7 TYIDLFRKRATKDDITLtlg
   8 TYIEMFRAHAKPSDVLLmeg
   9 TYIDLVKKHLRHEDIQLlng
  10 MYITFMQKVARVDDVTLmpg