# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ywfA 296 9.20e-01 1w2yA 229 9.27e-01 a.204.1.1 109140 1s69A 124 1.02e+00 a.1.1.1 105305 1hlvA 131 1.10e+00 a.4.1.7,a.4.1.7 65854,65855 1a41 234 1.72e+00 1a41 d.163.1.2 42174 1b8zA 90 1.91e+00 1huuA a.55.1.1 17902 1z77A 200 2.00e+00 1ekeA 230 2.70e+00 1ekeA c.55.3.1 33572 1g5cA 170 2.77e+00 1g5cA c.53.2.1 60264 1rkbA 173 2.81e+00 1p7tA 731 2.98e+00 c.1.13.1 94319 1zljA 78 3.46e+00 1ugjA 141 3.97e+00 b.41.1.3 107826 2a97A 439 4.15e+00 1sedA 117 4.33e+00 a.219.1.1 105449 1iw0A 215 4.54e+00 a.132.1.1 83720 2cg4A 152 4.74e+00 1wzdA 215 5.04e+00 1x3lA 440 5.17e+00 2gfnA 209 5.39e+00 2fx0A 201 6.02e+00 1whzA 70 6.12e+00 1qh5A 260 6.12e+00 1qh5A d.157.1.2 42057 2cfaA 217 6.82e+00 2bjbA 462 8.35e+00 1knvA 293 8.82e+00 c.52.1.7 68707 2cfxA 144 9.30e+00 1pb6A 212 1.07e+01 a.4.1.9,a.121.1.1 88017,88018 1aua 296 1.12e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1n0wA 243 1.18e+01 c.37.1.11 79772 1tgrA 52 1.18e+01 2fnuA 375 1.19e+01 1neeA 138 1.22e+01 d.241.1.1,g.59.1.1 91841,91842 1kdgA 546 1.23e+01 c.3.1.2,d.16.1.1 77337,77338 1v2zA 111 1.26e+01 a.186.1.1 108300 5eau 548 1.30e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1io2A 213 1.31e+01 1ekeA c.55.3.1 62612 2ccmA 191 1.31e+01 1pyaB 228 1.43e+01 1pyaB 1d8bA 81 1.44e+01 1d8bA a.60.8.1 18094 2c30A 321 1.46e+01 1fc3A 120 1.46e+01 1fc3A a.4.6.3 16237 1zbsA 291 1.49e+01 1pufA 77 1.56e+01 a.4.1.1 95131 3tmkA 216 1.57e+01 3tmkA c.37.1.1 31920 1u20A 212 1.61e+01 1l9vA 317 1.66e+01 d.13.2.1,d.216.1.1 73760,73761 1keaA 221 1.66e+01 a.96.1.2 68491 1iv3A 152 1.67e+01 d.79.5.1 76828 1wovA 250 1.71e+01 1i88A 389 1.85e+01 c.95.1.2,c.95.1.2 66070,66071 1nnwA 252 1.88e+01 d.159.1.5 80674 1t3qA 168 1.96e+01 a.56.1.1,d.15.4.2 106367,106368 1u0mA 382 2.01e+01 c.95.1.2,c.95.1.2 107557,107558 1t2dA 322 2.01e+01 c.2.1.5,d.162.1.1 99084,99085 3kvt 115 2.06e+01 1t1dA d.42.1.2 38642 1ow1A 195 2.10e+01 b.131.1.3 93625 1dciA 275 2.18e+01 1dciA c.14.1.3 30918 1nn5A 215 2.19e+01 c.37.1.1 85892 2fexA 188 2.20e+01 1ffyA 917 2.20e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1ta3B 303 2.21e+01 c.1.8.3 106732 1sd4A 126 2.24e+01 a.4.5.39 105428 1tca 317 2.25e+01 1tca c.69.1.17 34726 1gu9A 177 2.32e+01 a.152.1.1 65540 2g7gA 213 2.33e+01 1my6A 199 2.34e+01 a.2.11.1,d.44.1.1 85232,85233 1jnrA 643 2.38e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 2fjbA 643 2.39e+01 1yemA 179 2.41e+01 2guhA 214 2.44e+01 1zuhA 168 2.48e+01 2c4nA 250 2.48e+01 1ri5A 298 2.58e+01 c.66.1.34 97502 1nrvA 105 2.59e+01 d.93.1.1 86126 1cqxA 403 2.63e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1wy5A 317 2.66e+01 1fvkA 189 2.68e+01 1fvkA c.47.1.13 90351 1fjlA 81 2.69e+01 2hddA a.4.1.1 16017 1s9jA 341 2.74e+01 1vi0A 206 2.75e+01 a.4.1.9,a.121.1.1 100720,100721 1m3kA 392 2.87e+01 c.95.1.1,c.95.1.1 78565,78566 1l7vA 326 2.88e+01 f.22.1.1 73672 1ci4A 89 2.89e+01 1qckA a.60.5.1 17970 1v7nV 163 2.89e+01 a.26.1.2 100476 1l6xB 34 2.94e+01 k.13.1.1 73644 2cu3A 64 2.97e+01 1m4tA 392 3.05e+01 c.95.1.1,c.95.1.1 78617,78618 1uz5A 402 3.07e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1v3yA 192 3.09e+01 1afwA 393 3.11e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1j55A 95 3.13e+01 a.39.1.2 77078 1ui5A 215 3.16e+01 a.4.1.9,a.121.1.1 107856,107857 1lw1A 177 3.28e+01 a.152.1.1 74290 1rktA 205 3.41e+01 a.4.1.9,a.121.1.1 97623,97624 1vjxA 157 3.49e+01 a.25.1.1 100837 1oaoA 674 3.57e+01 e.26.1.2 86744 1pmzA 86 3.62e+01 a.39.1.10 104195 1o4sA 389 3.65e+01 c.67.1.1 86620 1yz4A 160 3.90e+01 1sfxA 109 3.94e+01 a.4.5.50 105505 2f1lA 187 3.94e+01 1l8nA 679 3.97e+01 c.1.8.10,d.92.2.2 84564,84565 1wudA 89 3.97e+01 1o6zA 303 3.98e+01 c.2.1.5,d.162.1.1 81107,81108 1tg7A 971 3.98e+01 1wy9A 147 4.01e+01 1x74A 360 4.01e+01 1aisB 200 4.03e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1pb1A 416 4.05e+01 c.77.1.1 88014 1tedA 393 4.11e+01 c.95.1.2 106807 1dlyA 164 4.12e+01 1dlyA a.1.1.1 14983 2aeuA 374 4.13e+01 1wb0A 445 4.16e+01 2cchB 260 4.20e+01 2d3dA 88 4.31e+01 1q0pA 223 4.32e+01 c.62.1.1 95507 1alu 186 4.35e+01 1alu a.26.1.1 16826 1mla 309 4.36e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1vljA 407 4.38e+01 e.22.1.2 108832 1je8A 82 4.39e+01 a.4.6.2 77108 1mswD 883 4.41e+01 e.8.1.3 79427 1tv8A 340 4.41e+01 c.1.28.3 107352 1wh5A 80 4.41e+01 1u7kA 131 4.42e+01 1eexB 224 4.49e+01 1dioB c.51.3.1 33213 1kutA 230 4.56e+01 d.143.1.1 73017 2cr5A 109 4.61e+01 1xk7A 408 4.64e+01 1lqvA 193 4.64e+01 d.19.1.1 74206 1pa2A 306 4.71e+01 1bgp a.93.1.1 18693 1h4vB 421 4.73e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1vrmA 325 4.74e+01 2dafA 118 4.76e+01 1u14A 172 4.77e+01 c.51.4.3 107579 1jqlB 140 4.93e+01 c.37.1.20 63234 1v32A 101 5.05e+01 a.42.1.1 100277 2b9hA 353 5.05e+01 1rlzA 369 5.07e+01 c.31.1.1 104989 1yn4A 99 5.09e+01 1xfhA 422 5.13e+01 1n1fA 159 5.21e+01 a.26.1.3 79803 1j54A 186 5.22e+01 c.55.3.5 77077 1hqsA 423 5.41e+01 1iso c.77.1.1 61154 1nzjA 298 5.43e+01 c.26.1.1 92377 6ldh 330 5.58e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 1w36B 1180 5.64e+01 2h21A 440 5.66e+01 2g8lA 299 5.68e+01 2hddA 61 5.77e+01 2hddA a.4.1.1 15971 1r1tA 122 5.84e+01 a.4.5.5 104769 1j1vA 94 5.91e+01 a.4.12.2 83981 2ah5A 210 5.93e+01 2ahyA 110 5.99e+01 1o8rA 94 5.99e+01 d.234.1.1 86677 1yzxA 226 6.04e+01 1vcc 77 6.10e+01 1vcc d.121.1.1 41092 2fp4B 395 6.13e+01 1qu9A 128 6.18e+01 1qu9A d.79.1.1 39755 1xuuA 349 6.20e+01 1yhvA 297 6.22e+01 1rybA 212 6.24e+01 c.56.3.1 98098 2c7nA 74 6.38e+01 1z2iA 358 6.40e+01 2if1 126 6.44e+01 2if1 d.64.1.1 39547 1i0dA 332 6.52e+01 1pscA c.1.9.3 61487 1res 43 6.52e+01 1ret a.4.1.2 16023 1cojA 212 6.57e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1pmnA 364 6.60e+01 d.144.1.7 94907 1w0hA 204 6.61e+01 1t1jA 125 6.66e+01 c.137.1.1 106249 1qjcA 158 6.72e+01 1b6tA c.26.1.3 63328 1wkuA 254 6.74e+01 1bg4 302 6.78e+01 1taxA c.1.8.3 28806 1u0jA 267 6.78e+01 c.37.1.20 107546 1ka1A 357 6.81e+01 e.7.1.1 68369 1yrcA 414 6.86e+01 1fnnA 389 6.89e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1z8uA 102 7.02e+01 1bed 181 7.11e+01 1fvkA c.47.1.13 90330 1x47A 98 7.19e+01 1cjwA 166 7.19e+01 1cjwA d.108.1.1 40818 1i39A 225 7.20e+01 1ekeA c.55.3.1 61585 1m6eX 359 7.23e+01 c.66.1.35 91188 2f4mB 61 7.34e+01 1khyA 148 7.44e+01 a.174.1.1 77410 1u7gA 385 7.46e+01 f.44.1.1 107723 1f7uA 607 7.59e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1vkeA 133 7.62e+01 a.152.1.2 108650 2fokA 579 7.65e+01 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 2b0cA 206 7.71e+01 1jixA 351 7.74e+01 1c3jA c.87.1.1 63081 1kewA 361 7.79e+01 c.2.1.2 68544 1gcvB 136 7.80e+01 1cg5B a.1.1.2 15589 1x42A 232 7.85e+01 1po5A 476 7.90e+01 a.104.1.1 94963 1hruA 188 7.94e+01 1hruA d.115.1.1 40926 1y89A 238 7.94e+01 1u61A 138 7.95e+01 a.149.1.1 107696 2a11A 242 7.98e+01 1x0lA 333 8.06e+01 1ct9A 553 8.23e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1gwiA 411 8.31e+01 a.104.1.1 76364 2gtsA 86 8.45e+01 1k8kA 418 8.49e+01 c.55.1.1,c.55.1.1 68305,68306 1k8uA 90 8.57e+01 a.39.1.2 72181 1mba 147 8.67e+01 2fal a.1.1.2 15149 2cobA 70 8.75e+01 2bfwA 200 8.77e+01 1yh2A 175 8.82e+01 1mdc 133 8.86e+01 1hmt b.60.1.2 27198 2tct 207 8.86e+01 2tct a.4.1.9,a.121.1.1 16063,19240 2ct9A 208 8.86e+01 1rylA 167 8.86e+01 d.276.1.1 105124 3thiA 371 8.89e+01 2thiA c.94.1.1 35792 1qc7A 101 8.89e+01 1qc7A a.118.14.1 18456 1ux8A 132 8.91e+01 1h3qA 140 8.93e+01 d.110.4.3 76652 1ok7A 366 8.93e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1txdA 385 8.94e+01 a.87.1.1,b.55.1.1 107422,107423 2fgqX 332 8.94e+01 2ciwA 299 8.95e+01 1vhyA 257 8.97e+01 b.122.1.2,c.116.1.5 100714,100715