# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hlvA 131 1.77e-01 a.4.1.7,a.4.1.7 65854,65855 1x3lA 440 1.77e-01 1y2mA 716 2.99e-01 1w2yA 229 3.03e-01 a.204.1.1 109140 1b8zA 90 6.48e-01 1huuA a.55.1.1 17902 1x42A 232 1.00e+00 1pyaB 228 1.09e+00 1pyaB 2aaxA 275 1.12e+00 1l6xB 34 1.58e+00 k.13.1.1 73644 1rkbA 173 1.74e+00 1s69A 124 2.04e+00 a.1.1.1 105305 1wkaA 147 2.13e+00 1t3qA 168 2.19e+00 a.56.1.1,d.15.4.2 106367,106368 1paqA 189 2.20e+00 a.118.1.14 94413 1whzA 70 2.22e+00 2cfxA 144 2.53e+00 1u5tB 169 2.73e+00 a.4.5.54,a.4.5.54 107686,107687 1z8uA 102 2.75e+00 1t7rA 269 2.96e+00 a.123.1.1 106635 1ui0A 205 3.22e+00 c.18.1.2 99411 1tqhA 247 3.52e+00 c.69.1.29 107225 1vqzA 341 3.55e+00 1ugjA 141 3.61e+00 b.41.1.3 107826 1l9vA 317 3.63e+00 d.13.2.1,d.216.1.1 73760,73761 1e6bA 221 4.01e+00 1e6bA a.45.1.1,c.47.1.5 59294,59295 1szwA 379 4.03e+00 d.265.1.4 99047 2vhbA 146 4.21e+00 2vhbA a.1.1.2 15629 1neeA 138 4.34e+00 d.241.1.1,g.59.1.1 91841,91842 1zbsA 291 4.55e+00 1oxxK 353 4.61e+00 b.40.6.3,c.37.1.12 93715,93716 2fpnA 216 4.64e+00 2g09A 297 4.78e+00 1v96A 149 4.83e+00 2bsjA 133 4.93e+00 1pufA 77 4.94e+00 a.4.1.1 95131 2au5A 139 5.06e+00 1qc7A 101 5.29e+00 1qc7A a.118.14.1 18456 2f1lA 187 5.57e+00 1zv1A 65 5.62e+00 1kdgA 546 5.80e+00 c.3.1.2,d.16.1.1 77337,77338 2cg4A 152 6.11e+00 1fvkA 189 6.12e+00 1fvkA c.47.1.13 90351 1sd4A 126 6.14e+00 a.4.5.39 105428 2cu3A 64 6.15e+00 1vj7A 393 6.26e+00 a.211.1.1,d.218.1.8 100801,100802 1sedA 117 6.32e+00 a.219.1.1 105449 1to2E 281 6.32e+00 1khyA 148 6.36e+00 a.174.1.1 77410 4bcl 366 6.58e+00 4bcl b.75.1.1 27968 1t1jA 125 6.61e+00 c.137.1.1 106249 1sqnA 261 6.87e+00 a.123.1.1 105944 1dcs 311 7.45e+00 1dcs b.82.2.1 28124 1sur 215 8.81e+00 1sur c.26.2.2 31620 1fc3A 120 8.90e+00 1fc3A a.4.6.3 16237 1my6A 199 8.95e+00 a.2.11.1,d.44.1.1 85232,85233 1whvA 100 9.13e+00 1ej6D 418 9.21e+00 i.7.1.1 45970 2aplA 157 9.30e+00 1p7tA 731 9.31e+00 c.1.13.1 94319 2bhoA 130 1.00e+01 1r1uA 106 1.01e+01 a.4.5.5 104771 2a6cA 83 1.02e+01 1uz5A 402 1.07e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1zklA 353 1.08e+01 1u9lA 70 1.10e+01 a.60.4.2 107751 1xsvA 113 1.18e+01 1tedA 393 1.18e+01 c.95.1.2 106807 2hddA 61 1.19e+01 2hddA a.4.1.1 15971 2dbbA 151 1.24e+01 1res 43 1.26e+01 1ret a.4.1.2 16023 1v7bA 185 1.37e+01 1v7nV 163 1.41e+01 a.26.1.2 100476 2f2sA 406 1.41e+01 1qu1A 155 1.44e+01 1qu1A h.3.1.1 45670 2f4mB 61 1.45e+01 1ctf 74 1.47e+01 1ctf d.45.1.1 38759 1wu4A 396 1.49e+01 1nrlA 316 1.51e+01 a.123.1.1 92091 2cr5A 109 1.51e+01 1x58A 62 1.52e+01 1ayl 541 1.56e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1w0hA 204 1.60e+01 1yemA 179 1.62e+01 2bh1X 96 1.67e+01 1nq6A 302 1.68e+01 c.1.8.3 92046 1q7eA 428 1.72e+01 c.123.1.1 96035 2as0A 396 1.73e+01 2scpA 174 1.82e+01 2scpA a.39.1.5 17256 1zk8A 183 1.84e+01 1pu1A 94 1.87e+01 d.266.1.1 104307 1cxzB 86 1.90e+01 1cxzB a.2.6.1 15705 1bed 181 1.91e+01 1fvkA c.47.1.13 90330 1xg2B 153 1.91e+01 2fu2A 102 1.91e+01 1mijA 152 1.93e+01 a.4.1.1 79150 1v32A 101 1.96e+01 a.42.1.1 100277 1dofA 403 1.96e+01 1c3cA a.127.1.1 19429 2ccmA 191 2.01e+01 1zd0A 150 2.01e+01 1ustA 93 2.01e+01 a.4.5.13 99884 2afaA 425 2.05e+01 2fgqX 332 2.06e+01 1fjlA 81 2.10e+01 2hddA a.4.1.1 16017 1aua 296 2.12e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1xk7A 408 2.13e+01 1vkeA 133 2.18e+01 a.152.1.2 108650 1vmeA 410 2.20e+01 c.23.5.1,d.157.1.3 108893,108894 1or4A 178 2.24e+01 a.1.1.2 93447 1tkeA 224 2.26e+01 1wddS 128 2.31e+01 1htwA 158 2.35e+01 c.37.1.18 71083 1txjA 171 2.38e+01 b.88.1.2 107424 1s6cA 183 2.49e+01 a.39.1.5 98594 1o4sA 389 2.51e+01 c.67.1.1 86620 1afwA 393 2.51e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1m0kA 262 2.51e+01 f.13.1.1 78344 1vf6C 72 2.51e+01 a.194.1.1 100602 1xqwA 293 2.54e+01 2f5uA 447 2.55e+01 1pufB 73 2.57e+01 a.4.1.1 95132 1h3qA 140 2.58e+01 d.110.4.3 76652 1pne 140 2.65e+01 1pne d.110.1.1 40866 2aeuA 374 2.66e+01 1y9iA 178 2.72e+01 2fm9A 215 2.72e+01 2af6A 258 2.77e+01 1zljA 78 2.84e+01 1k8kC 372 2.86e+01 b.69.4.1 68308 1tca 317 3.02e+01 1tca c.69.1.17 34726 1tv8A 340 3.04e+01 c.1.28.3 107352 1hgxA 183 3.06e+01 1tc1A c.61.1.1 34027 2rslA 140 3.07e+01 2rslA c.53.1.1 33345 1iv3A 152 3.16e+01 d.79.5.1 76828 1wi6A 88 3.16e+01 1y43B 173 3.18e+01 2b5hA 200 3.21e+01 3kvt 115 3.21e+01 1t1dA d.42.1.2 38642 1s7zA 117 3.26e+01 a.159.3.1 98715 1z54A 132 3.31e+01 1k0eA 453 3.32e+01 d.161.1.1 67938 1wrdA 103 3.36e+01 1ve4A 206 3.40e+01 1t7lA 766 3.44e+01 1u7kA 131 3.51e+01 1g5cA 170 3.54e+01 1g5cA c.53.2.1 60264 1bg4 302 3.55e+01 1taxA c.1.8.3 28806 1y0uA 96 3.56e+01 2dafA 118 3.56e+01 1xjuA 163 3.59e+01 1ispA 181 3.59e+01 c.69.1.18 76778 1nmeA 146 3.61e+01 c.17.1.1 85874 1oeyJ 107 3.76e+01 d.15.2.2 92804 1n0wA 243 3.77e+01 c.37.1.11 79772 1u20A 212 3.77e+01 1gcvB 136 3.81e+01 1cg5B a.1.1.2 15589 1i0lA 221 3.84e+01 c.61.1.1 71096 1b8aA 438 3.87e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1pgyA 47 3.87e+01 a.5.2.1 94696 1yozA 116 3.89e+01 3tmkA 216 3.93e+01 3tmkA c.37.1.1 31920 1u04A 771 3.94e+01 b.34.14.1,c.55.3.10 107539,107540 1nlwB 76 3.96e+01 a.38.1.1 80634 1z96A 40 3.97e+01 1wmiB 67 3.98e+01 1zchA 255 3.98e+01 1m55A 197 3.99e+01 d.89.1.3 74469 2af4C 333 4.00e+01 1cs1A 386 4.01e+01 1ibjA c.67.1.3 34399 1wqgA 185 4.03e+01 1x9mA 698 4.05e+01 1mtyB 384 4.06e+01 1mtyB a.25.1.2 16740 1a41 234 4.10e+01 1a41 d.163.1.2 42174 1g291 372 4.22e+01 1g291 1r2qA 170 4.26e+01 c.37.1.8 96874 2blkA 122 4.26e+01 1b0nA 111 4.26e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1r1tA 122 4.29e+01 a.4.5.5 104769 1l0wA 580 4.33e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1kblA 873 4.34e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1lj9A 144 4.38e+01 a.4.5.28 78035 1mh1 186 4.46e+01 1eesA c.37.1.8 32002 1r0rE 274 4.50e+01 c.41.1.1 96735 1xg7A 250 4.51e+01 1ecmA 109 4.52e+01 1ecmA a.130.1.1 19492 1gps 47 4.55e+01 1gpt g.3.7.5 44176 1u14A 172 4.56e+01 c.51.4.3 107579 1zxxA 319 4.57e+01 1wveC 80 4.59e+01 2bvlA 543 4.60e+01 1tig 94 4.63e+01 1tig d.68.1.1 39566 1roaA 122 4.64e+01 d.17.1.2 105024 1txnA 328 4.70e+01 1pd3A 58 4.74e+01 a.30.3.1 94512 1fpoA 171 4.77e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1i3cA 149 4.87e+01 c.23.1.1 71112 1vrvA 101 4.87e+01 1eexG 173 4.88e+01 1dioG a.23.2.1 16490 1r6jA 82 4.92e+01 b.36.1.1 97151 1q8bA 105 4.95e+01 d.58.4.6 96201 1xkpB 124 4.97e+01 2agaA 190 4.98e+01 2if1 126 5.00e+01 2if1 d.64.1.1 39547 2cwzA 141 5.01e+01 2bxxA 134 5.01e+01 1sw5A 275 5.05e+01 c.94.1.1 106069 1t9bA 677 5.05e+01 1ufwA 95 5.06e+01 d.58.7.1 99358 1q0pA 223 5.06e+01 c.62.1.1 95507 1vi0A 206 5.08e+01 a.4.1.9,a.121.1.1 100720,100721 1k61A 60 5.09e+01 a.4.1.1 77270 2cmxA 118 5.09e+01 1gpeA 587 5.10e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1wl4A 397 5.10e+01 2glfA 450 5.17e+01 2ah5A 210 5.23e+01 1t06A 235 5.28e+01 a.118.1.17 106194 1s28A 132 5.30e+01 d.198.1.1 105223 1wzcA 249 5.34e+01 1hs7A 97 5.35e+01 1hs7A a.47.2.1 61236 1axn 323 5.36e+01 1avc a.65.1.1 18149 2av5A 120 5.39e+01 2glzA 153 5.41e+01 1o08A 221 5.42e+01 c.108.1.6 86525 1useA 45 5.45e+01 1v3wA 173 5.49e+01 b.81.1.5 100291 1ngnA 155 5.53e+01 a.96.1.2 85697 1guxA 218 5.54e+01 1guxA a.74.1.3 18388 1dm5A 315 5.54e+01 1avc a.65.1.1 18186 2fswA 107 5.60e+01 2bnuA 203 5.61e+01 1mldA 314 5.62e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1u55A 188 5.68e+01 d.278.1.1 107677 1ybzA 91 5.71e+01 1o26A 232 5.73e+01 d.207.1.1 86566 2bniA 34 5.73e+01 1j75A 67 5.75e+01 a.4.5.19 62673 1oaiA 59 5.82e+01 a.5.2.3 81255 1wy5A 317 5.82e+01 2fd5A 180 5.85e+01 2gfnA 209 5.86e+01 2g40A 224 5.86e+01 1p5fA 189 5.86e+01 c.23.16.2 94142 2d9kA 75 5.88e+01 1qbjA 81 5.88e+01 1qbjA a.4.5.19 16155 2auwA 170 5.92e+01 1x47A 98 5.92e+01 2pgd 482 5.92e+01 2pgd a.100.1.1,c.2.1.6 18778,30190 1yg2A 179 5.94e+01 1yh2A 175 5.97e+01 8rucI 123 6.00e+01 1rboC d.73.1.1 39629 1ywfA 296 6.03e+01 1sfxA 109 6.04e+01 a.4.5.50 105505 1mdc 133 6.07e+01 1hmt b.60.1.2 27198 1jogA 146 6.10e+01 a.24.16.2 77142 2cxxA 190 6.10e+01 1r69 69 6.10e+01 1r69 a.35.1.2 17028 1m1hA 248 6.17e+01 b.114.1.1,d.58.42.1 78415,78416 1xgsA 295 6.25e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1nkpB 83 6.25e+01 a.38.1.1 80574 1qrvA 73 6.29e+01 1cktA a.21.1.1 16425 1je8A 82 6.39e+01 a.4.6.2 77108 1d4oA 184 6.42e+01 1d4oA c.31.1.4 31748 1nf3A 195 6.42e+01 c.37.1.8 85594 1f3mA 80 6.46e+01 1f3mA j.66.1.1 46358 1keaA 221 6.53e+01 a.96.1.2 68491 2b1eA 564 6.62e+01 1vcc 77 6.63e+01 1vcc d.121.1.1 41092 2f4eA 180 6.64e+01 1ka2A 499 6.72e+01 d.92.1.5 77305 2fkiA 126 6.75e+01 1rktA 205 6.76e+01 a.4.1.9,a.121.1.1 97623,97624 1u5pA 216 6.80e+01 1o0yA 260 6.85e+01 c.1.10.1 80756 1colA 204 6.87e+01 1a87 f.1.1.1 43378 1tffA 234 6.88e+01 d.3.1.11 106854 2g7gA 213 6.98e+01 1tgrA 52 6.99e+01 2ewtA 71 7.09e+01 2auhB 59 7.09e+01 1tc3C 51 7.13e+01 1tc3C a.4.1.2 16025 1no4A 97 7.14e+01 h.1.24.1 85918 1j5wA 298 7.18e+01 d.104.1.1 71589 1t2dA 322 7.24e+01 c.2.1.5,d.162.1.1 99084,99085 1us5A 314 7.25e+01 c.94.1.1 99856 1t56A 216 7.31e+01 a.4.1.9,a.121.1.1 106428,106429 1z2kA 109 7.34e+01 1y88A 199 7.41e+01 1sh0A 510 7.46e+01 e.8.1.4 98876 1j1vA 94 7.49e+01 a.4.12.2 83981 1sw5B 275 7.50e+01 c.94.1.1 106070 1w85A 368 7.51e+01 1r4gA 53 7.55e+01 a.8.5.1 96996 1jggA 60 7.55e+01 2hddA a.4.1.1 62950 1xccA 220 7.64e+01 1yviA 149 7.65e+01 2fexA 188 7.68e+01 1oxkB 134 7.69e+01 c.23.1.1 93691 1ifqA 138 7.74e+01 1ifqA d.110.4.1 62350 1h4vB 421 7.75e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 2cw9A 194 7.80e+01 1es5A 262 7.89e+01 1skf e.3.1.1 42679 2gfgA 193 7.95e+01 2ftbA 125 7.97e+01 2cvhA 220 7.98e+01 1pbwA 216 8.02e+01 1pbwA a.116.1.1 19103 1v63A 101 8.02e+01 a.21.1.1 108391 1vkcA 158 8.08e+01 1wm3A 72 8.20e+01 2bmjA 178 8.26e+01 1ka8A 100 8.27e+01 a.4.5.20 72241 1ddf 127 8.30e+01 1ddf a.77.1.2 18423 1k8uA 90 8.31e+01 a.39.1.2 72181 1yn4A 99 8.33e+01 1tr8A 102 8.34e+01 1m4tA 392 8.42e+01 c.95.1.1,c.95.1.1 78617,78618 1ukfA 188 8.49e+01 d.3.1.10 99488 1m1nA 491 8.54e+01 c.92.2.3 78417 1g6uA 48 8.57e+01 1g6uA k.9.1.1 46425 1j1jA 240 8.62e+01 a.118.16.1 90762 1x3kA 152 8.69e+01 1ypyA 184 8.87e+01 1q6uA 245 8.92e+01 d.26.1.1 95998 1muwA 386 8.93e+01 c.1.15.3 79495 2cosA 54 8.94e+01 1v4aA 440 8.96e+01 a.24.16.4,d.218.1.9 108350,108351 1gz2A 142 8.97e+01 d.169.1.1 83392