# List of top-scoring protein chains for t06-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hqsA 423 3.02e-02 1iso c.77.1.1 61154 1d7uA 433 5.35e-01 2dkb c.67.1.4 34439 4bcl 366 9.10e-01 4bcl b.75.1.1 27968 1yozA 116 9.89e-01 1jq5A 370 1.04e+00 e.22.1.2 67084 1djrD 103 1.18e+00 3chbD b.40.2.1 24865 1lf6A 684 1.30e+00 a.102.1.5,b.30.5.5 77918,77919 3chbD 104 1.36e+00 3chbD b.40.2.1 24970 1h3qA 140 1.59e+00 d.110.4.3 76652 1lv7A 257 1.97e+00 c.37.1.20 78232 1rxwA 336 2.52e+00 a.60.7.1,c.120.1.2 98059,98060 1cnzA 363 2.64e+00 1cnzA c.77.1.1 35061 1woqA 267 2.75e+00 c.55.1.10,c.55.1.10 109462,109463 1v58A 241 2.84e+00 c.47.1.9,d.17.3.1 108371,108372 1nrlA 316 3.11e+00 a.123.1.1 92091 1qusA 322 3.26e+00 1ltm d.2.1.6 36991 1vb3A 428 3.64e+00 2af6A 258 4.20e+00 1w2yA 229 4.58e+00 a.204.1.1 109140 1q59A 172 4.66e+00 f.1.4.1 95881 1qw9A 502 4.93e+00 b.71.1.2,c.1.8.3 96466,96467 1x3lA 440 5.78e+00 1ea7A 310 5.87e+00 c.41.1.1 70086 1sffA 426 6.31e+00 c.67.1.4 105482 1k0eA 453 6.73e+00 d.161.1.1 67938 1p32A 209 6.82e+00 1p32A d.25.1.1 38379 1u55A 188 6.87e+00 d.278.1.1 107677 1ejxC 567 6.99e+00 b.92.1.1,c.1.9.2 83184,83185 1eg3A 261 7.35e+00 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1hbnB 442 7.60e+00 1mroB a.89.1.1,d.58.31.2 60900,60901 1wl4A 397 8.00e+00 2dkaA 544 8.09e+00 1wa5C 960 8.15e+00 1dzkA 157 8.43e+00 1obpA b.60.1.1 27096 2b18A 164 8.52e+00 1sedA 117 8.75e+00 a.219.1.1 105449 2eu9A 355 9.09e+00 1b8zA 90 9.16e+00 1huuA a.55.1.1 17902 1xdwA 331 1.02e+01 1tuoA 464 1.05e+01 1eexB 224 1.05e+01 1dioB c.51.3.1 33213 1o9wA 177 1.07e+01 b.2.3.5 86713 1txnA 328 1.18e+01 1ie9A 259 1.22e+01 1db1A a.123.1.1 62318 1wrvA 308 1.24e+01 1iomA 377 1.31e+01 a.103.1.1 83698 1l9vA 317 1.44e+01 d.13.2.1,d.216.1.1 73760,73761 1guzA 310 1.45e+01 c.2.1.5,d.162.1.1 65586,65587 2cg4A 152 1.47e+01 1g8aA 227 1.52e+01 c.66.1.3 90506 1to6A 371 1.60e+01 c.141.1.1 107170 1hdhA 536 1.73e+01 c.76.1.2 65805 1ep3B 262 1.74e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1r6fA 310 1.74e+01 e.46.1.1 97149 1kqfB 294 1.75e+01 d.58.1.5,f.23.22.1 75900,75901 1wkaA 147 1.85e+01 1auoA 218 1.93e+01 1auoA c.69.1.14 34716 1zc6A 305 1.95e+01 1rkbA 173 1.97e+01 1iyjB 817 2.07e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1bebA 162 2.10e+01 1bebA b.60.1.1 27115 1nthA 458 2.13e+01 c.1.25.1 80730 1fcdA 401 2.17e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1on3A 523 2.32e+01 c.14.1.4,c.14.1.4 87107,87108 1i19A 561 2.33e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1b67A 68 2.33e+01 1a7w a.22.1.2 16474 2c30A 321 2.34e+01 1gteA 1025 2.34e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1i6aA 219 2.35e+01 c.94.1.1 61827 1jnrA 643 2.37e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1wu4A 396 2.42e+01 1xx1A 285 2.42e+01 1d3gA 367 2.42e+01 1d3gA c.1.4.1 28600 1ia8A 289 2.46e+01 1ia8A d.144.1.7 62112 1ta9A 450 2.51e+01 2cfaA 217 2.55e+01 1qh4A 380 2.61e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1khyA 148 2.70e+01 a.174.1.1 77410 1xwwA 157 2.74e+01 3tmkA 216 2.75e+01 3tmkA c.37.1.1 31920 1t3qA 168 2.75e+01 a.56.1.1,d.15.4.2 106367,106368 1kaeA 434 2.79e+01 c.82.1.2 72247 1v3yA 192 2.81e+01 1gox 370 2.81e+01 1gox c.1.4.1 28607 2cvzA 289 2.85e+01 1x0cA 549 2.93e+01 1a0cA 438 2.95e+01 1a0cA c.1.15.3 29529 1wsrA 375 2.98e+01 2g8oA 264 2.98e+01 1pufA 77 2.98e+01 a.4.1.1 95131 1to2E 281 3.06e+01 1uasA 362 3.06e+01 b.71.1.1,c.1.8.1 88388,88389 1z77A 200 3.08e+01 1e4mM 501 3.12e+01 1e70M c.1.8.4 59226 1whzA 70 3.12e+01 1hlvA 131 3.13e+01 a.4.1.7,a.4.1.7 65854,65855 1b65A 375 3.19e+01 1b65A d.154.1.1 42020 1n8kA 374 3.20e+01 b.35.1.2,c.2.1.1 80298,80299 1rwtA 232 3.21e+01 f.43.1.1 97992 2al2A 436 3.22e+01 1xrsA 516 3.27e+01 2bcfA 276 3.29e+01 2dbqA 334 3.30e+01 1oi7A 288 3.30e+01 c.2.1.8,c.23.4.1 87049,87050 1s9jA 341 3.30e+01 1ve4A 206 3.31e+01 4ubpC 570 3.32e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1rqbA 539 3.32e+01 a.5.7.2,c.1.10.5 105057,105058 1uz5A 402 3.34e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1o7fA 469 3.35e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1jc4A 148 3.41e+01 1jc4A d.32.1.4 62863 1ej6D 418 3.43e+01 i.7.1.1 45970 1mzhA 225 3.56e+01 c.1.10.1 79698 1ds1A 324 3.56e+01 1drtA b.82.2.2 28127 1upaA 573 3.57e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1g5cA 170 3.61e+01 1g5cA c.53.2.1 60264 1hleA 345 3.80e+01 1ovaA e.1.1.1 42618 1l5aA 436 3.81e+01 c.43.1.2,c.43.1.2 75923,75924 1kblA 873 3.86e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1nd4A 264 3.86e+01 d.144.1.6 91815 2fjbA 643 3.90e+01 1xngA 268 3.96e+01 1yoxA 250 3.99e+01 1gwuA 309 4.00e+01 a.93.1.1 83351 1c52 131 4.02e+01 1c52 a.3.1.1 15810 1w1oA 534 4.03e+01 d.58.32.4,d.145.1.1 109071,109072 1o26A 232 4.08e+01 d.207.1.1 86566 1auiB 169 4.10e+01 1auiB a.39.1.5 17325 2bfwA 200 4.13e+01 1rvkA 382 4.18e+01 c.1.11.2,d.54.1.1 97928,97929 1o0xA 262 4.19e+01 d.127.1.1 80755 1o17A 345 4.22e+01 a.46.2.1,c.27.1.1 80765,80766 2gdzA 267 4.24e+01 2bk9A 153 4.25e+01 1s69A 124 4.33e+01 a.1.1.1 105305 1ggzA 148 4.46e+01 a.39.1.5 70176 1mijA 152 4.52e+01 a.4.1.1 79150 1ak0 270 4.57e+01 1ak0 a.124.1.2 19345 1st9A 143 4.61e+01 c.47.1.10 98987 1qd1A 325 4.63e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 2ptd 298 4.64e+01 2plc c.1.18.2 29605 1reqB 637 4.66e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1jfzA 154 4.77e+01 a.149.1.1 66655 1tf5A 844 4.80e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1yhvA 297 4.80e+01 1ynfA 458 4.81e+01 1gycA 499 4.81e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1yi8A 351 4.82e+01 1pieA 419 4.88e+01 d.14.1.5,d.58.26.7 94706,94707 1jd0A 263 4.88e+01 2cba b.74.1.1 62888 2aj0A 71 4.99e+01 1r9lA 309 5.01e+01 c.94.1.1 97262 1q8dA 108 5.07e+01 a.228.1.1 104554 1b9hA 388 5.09e+01 1b9hA c.67.1.4 34488 2d69A 430 5.12e+01 1oa4A 222 5.19e+01 b.29.1.11 86731 2fikA 287 5.19e+01 1yzxA 226 5.22e+01 1jmuB 666 5.29e+01 1dgfA 497 5.38e+01 1cf9A e.5.1.1 42782 1h6pA 203 5.44e+01 a.146.1.1 60690 1tkeA 224 5.49e+01 1lehA 364 5.55e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1zljA 78 5.57e+01 2ck3A 510 5.57e+01 1wdcB 156 5.58e+01 1wdcB a.39.1.5 17302 1exrA 148 5.63e+01 1cll a.39.1.5 17299 1uhnA 189 5.67e+01 a.39.1.5 99399 1yreA 197 5.68e+01 1ymtA 246 5.68e+01 1zv1A 65 5.69e+01 1t17A 148 5.71e+01 1v97A 1332 5.71e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1lrzA 426 5.74e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2d81A 318 5.78e+01 1x72A 334 5.93e+01 d.126.1.6 109495 1v5dA 386 5.98e+01 1j1lA 290 6.08e+01 b.82.1.12 90766 1vioA 243 6.18e+01 d.265.1.3,d.66.1.5 100762,100763 1vheA 373 6.20e+01 b.49.3.1,c.56.5.4 100669,100670 1oe4A 247 6.20e+01 c.18.1.3 86895 1pme 380 6.27e+01 1hcl d.144.1.7 41653 1epfA 191 6.29e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1yz4A 160 6.29e+01 1x6vA 630 6.36e+01 1vfgA 390 6.42e+01 a.173.1.1,d.218.1.4 108570,108571 2vhbA 146 6.43e+01 2vhbA a.1.1.2 15629 1vlbA 907 6.44e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1zgdA 312 6.45e+01 1rsoB 56 6.51e+01 a.194.1.1 97812 2fcwA 109 6.51e+01 2cunA 410 6.55e+01 1s7zA 117 6.55e+01 a.159.3.1 98715 1e5kA 201 6.56e+01 1fr9A c.68.1.8 34578 1n35A 1267 6.58e+01 e.8.1.4 79935 1o69A 394 6.58e+01 c.67.1.4 92560 1q0pA 223 6.58e+01 c.62.1.1 95507 1fiqC 763 6.59e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1xkpB 124 6.61e+01 1l7dA 384 6.66e+01 c.2.1.4,c.23.12.2 77774,77775 1p1jA 533 6.66e+01 c.2.1.3,d.81.1.3 87687,87688 1cmcA 104 6.67e+01 1cmbA a.43.1.5 17462 2bjbA 462 6.67e+01 1u0mA 382 6.68e+01 c.95.1.2,c.95.1.2 107557,107558 2bllA 345 6.74e+01 1atg 231 6.84e+01 1atg c.94.1.1 35834 1u4bA 580 6.87e+01 c.55.3.5,e.8.1.1 107664,107665 1awd 94 6.92e+01 1awd d.15.4.1 37673 1hyoA 421 6.92e+01 1qcnA b.34.8.1,d.177.1.1 59001,59002 1neeA 138 6.98e+01 d.241.1.1,g.59.1.1 91841,91842 1quuA 250 7.02e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1gu9A 177 7.07e+01 a.152.1.1 65540 1jy5A 212 7.08e+01 d.124.1.1 71940 1k8kC 372 7.10e+01 b.69.4.1 68308 1a7w 69 7.12e+01 1a7w a.22.1.2 16477 1ffyA 917 7.12e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1lldA 319 7.15e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1jqlB 140 7.23e+01 c.37.1.20 63234 1zowA 313 7.33e+01 1l6xB 34 7.39e+01 k.13.1.1 73644 1htwA 158 7.45e+01 c.37.1.18 71083 1j4aA 333 7.49e+01 c.2.1.4,c.23.12.1 71502,71503 1w0pA 781 7.61e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2bikB 313 7.69e+01 1ux5A 411 7.74e+01 a.207.1.1 100144 1pzgA 331 7.85e+01 c.2.1.5,d.162.1.1 95425,95426 1nf9A 207 7.86e+01 c.33.1.3 85631 1s6cA 183 7.93e+01 a.39.1.5 98594 1l6sA 323 7.96e+01 c.1.10.3 73627 1c02A 166 7.97e+01 1qspA a.24.10.2 16633 1np3A 338 8.03e+01 a.100.1.2,c.2.1.6 85946,85947 2bsjA 133 8.05e+01 1h2wA 710 8.21e+01 b.69.7.1,c.69.1.4 76596,76597 1ne2A 200 8.23e+01 c.66.1.32 85586 1obbA 480 8.24e+01 c.2.1.5,d.162.1.2 86760,86761 2fv7A 331 8.30e+01 2c1vA 338 8.32e+01 2cwxA 430 8.32e+01 1dd9A 338 8.32e+01 1dd9A e.13.1.1 43254 1u07A 90 8.34e+01 1nq7A 244 8.37e+01 a.123.1.1 92047 1d2nA 272 8.71e+01 1d2nA c.37.1.20 32428 1t1uA 639 8.72e+01 1tca 317 8.75e+01 1tca c.69.1.17 34726 1izcA 339 8.76e+01 c.1.12.5 83838 1ejeA 192 8.77e+01 1ejeA b.45.1.2 25757 1u9lA 70 8.95e+01 a.60.4.2 107751 2agyA 361 8.97e+01 1yspA 181 8.99e+01