# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ywfA 296 2.11e-01 1hlvA 131 2.99e-01 a.4.1.7,a.4.1.7 65854,65855 1s69A 124 6.43e-01 a.1.1.1 105305 1ugjA 141 1.69e+00 b.41.1.3 107826 2cfxA 144 2.11e+00 1w2yA 229 2.38e+00 a.204.1.1 109140 1ekeA 230 2.82e+00 1ekeA c.55.3.1 33572 1z77A 200 2.82e+00 1whzA 70 3.06e+00 1zljA 78 3.07e+00 1sedA 117 3.20e+00 a.219.1.1 105449 1s9jA 341 3.52e+00 1b8zA 90 3.91e+00 1huuA a.55.1.1 17902 1rkbA 173 4.00e+00 1pyaB 228 4.05e+00 1pyaB 1a41 234 4.21e+00 1a41 d.163.1.2 42174 2bjbA 462 4.59e+00 2cfaA 217 5.40e+00 1x3lA 440 5.93e+00 1p7tA 731 6.90e+00 c.1.13.1 94319 1u20A 212 6.91e+00 1knvA 293 7.13e+00 c.52.1.7 68707 1aua 296 8.07e+00 1aua a.5.3.1,c.13.1.1 16290,30882 2fnuA 375 8.45e+00 1qh5A 260 8.47e+00 1qh5A d.157.1.2 42057 1pb6A 212 8.89e+00 a.4.1.9,a.121.1.1 88017,88018 1n0wA 243 8.97e+00 c.37.1.11 79772 2cg4A 152 9.07e+00 1g5cA 170 9.36e+00 1g5cA c.53.2.1 60264 1zbsA 291 9.58e+00 1keaA 221 1.03e+01 a.96.1.2 68491 1v7nV 163 1.08e+01 a.26.1.2 100476 2a97A 439 1.08e+01 1l9vA 317 1.12e+01 d.13.2.1,d.216.1.1 73760,73761 2fexA 188 1.13e+01 1yz4A 160 1.15e+01 1tca 317 1.20e+01 1tca c.69.1.17 34726 1kdgA 546 1.30e+01 c.3.1.2,d.16.1.1 77337,77338 1my6A 199 1.39e+01 a.2.11.1,d.44.1.1 85232,85233 2c30A 321 1.39e+01 2ahyA 110 1.43e+01 1i88A 389 1.47e+01 c.95.1.2,c.95.1.2 66070,66071 2gfnA 209 1.61e+01 1d8bA 81 1.68e+01 1d8bA a.60.8.1 18094 1wkaA 147 1.70e+01 1sd4A 126 1.72e+01 a.4.5.39 105428 1t3qA 168 1.72e+01 a.56.1.1,d.15.4.2 106367,106368 1iv3A 152 1.75e+01 d.79.5.1 76828 2f1lA 187 1.77e+01 1l6xB 34 1.89e+01 k.13.1.1 73644 1ta3B 303 1.95e+01 c.1.8.3 106732 1fvkA 189 1.96e+01 1fvkA c.47.1.13 90351 1neeA 138 1.99e+01 d.241.1.1,g.59.1.1 91841,91842 2au5A 139 2.10e+01 1wovA 250 2.20e+01 1sfxA 109 2.20e+01 a.4.5.50 105505 1dciA 275 2.25e+01 1dciA c.14.1.3 30918 1ri5A 298 2.26e+01 c.66.1.34 97502 1v96A 149 2.26e+01 1t2dA 322 2.27e+01 c.2.1.5,d.162.1.1 99084,99085 1fnnA 389 2.27e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1wkuA 254 2.31e+01 1alu 186 2.31e+01 1alu a.26.1.1 16826 1uz5A 402 2.38e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1io2A 213 2.43e+01 1ekeA c.55.3.1 62612 1jnrA 643 2.53e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1u7kA 131 2.56e+01 1to2E 281 2.58e+01 1z8uA 102 2.59e+01 1jqlB 140 2.59e+01 c.37.1.20 63234 3tmkA 216 2.60e+01 3tmkA c.37.1.1 31920 1rlzA 369 2.67e+01 c.31.1.1 104989 2fjbA 643 2.68e+01 1vj7A 393 2.70e+01 a.211.1.1,d.218.1.8 100801,100802 1x42A 232 2.76e+01 1hruA 188 2.81e+01 1hruA d.115.1.1 40926 1pufA 77 2.86e+01 a.4.1.1 95131 1cs1A 386 2.94e+01 1ibjA c.67.1.3 34399 1t1jA 125 2.99e+01 c.137.1.1 106249 1lm5A 214 2.99e+01 d.211.2.1 74029 1wy5A 317 3.07e+01 1h3qA 140 3.18e+01 d.110.4.3 76652 1l7vA 326 3.18e+01 f.22.1.1 73672 1l8nA 679 3.19e+01 c.1.8.10,d.92.2.2 84564,84565 1paqA 189 3.25e+01 a.118.1.14 94413 1ayl 541 3.31e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1li5A 461 3.37e+01 a.27.1.1,c.26.1.1 73912,73913 1ka2A 499 3.38e+01 d.92.1.5 77305 1j55A 95 3.41e+01 a.39.1.2 77078 1q0pA 223 3.51e+01 c.62.1.1 95507 1id0A 152 3.53e+01 d.122.1.3 66111 1ffyA 917 3.57e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2fx0A 201 3.69e+01 1ui5A 215 3.70e+01 a.4.1.9,a.121.1.1 107856,107857 1v32A 101 3.75e+01 a.42.1.1 100277 2aeuA 374 3.81e+01 1f7uA 607 3.82e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2cmxA 118 3.87e+01 1u9lA 70 3.99e+01 a.60.4.2 107751 1pmzA 86 4.12e+01 a.39.1.10 104195 2c5rA 67 4.24e+01 1res 43 4.29e+01 1ret a.4.1.2 16023 2fd5A 180 4.32e+01 1q8dA 108 4.35e+01 a.228.1.1 104554 2cchB 260 4.36e+01 1sra 151 4.38e+01 1sra a.39.1.3 17190 1je8A 82 4.39e+01 a.4.6.2 77108 1tv8A 340 4.43e+01 c.1.28.3 107352 1ow1A 195 4.47e+01 b.131.1.3 93625 1y89A 238 4.48e+01 1c52 131 4.49e+01 1c52 a.3.1.1 15810 1dm5A 315 4.54e+01 1avc a.65.1.1 18186 1k8uA 90 4.57e+01 a.39.1.2 72181 1u14A 172 4.57e+01 c.51.4.3 107579 2gsfA 373 4.67e+01 1m6eX 359 4.68e+01 c.66.1.35 91188 2gaiA 633 4.74e+01 1ve4A 206 4.75e+01 2h21A 440 4.78e+01 1mba 147 4.80e+01 2fal a.1.1.2 15149 1sw5A 275 4.83e+01 c.94.1.1 106069 1nrvA 105 4.89e+01 d.93.1.1 86126 1yh2A 175 5.06e+01 2fgqX 332 5.06e+01 1yiiA 320 5.16e+01 1fjlA 81 5.19e+01 2hddA a.4.1.1 16017 2fa8A 105 5.25e+01 1jy5A 212 5.26e+01 d.124.1.1 71940 1oaoA 674 5.30e+01 e.26.1.2 86744 1ok7A 366 5.33e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 2ccmA 191 5.37e+01 1s6cA 183 5.43e+01 a.39.1.5 98594 1ngnA 155 5.45e+01 a.96.1.2 85697 1pufB 73 5.52e+01 a.4.1.1 95132 1mdc 133 5.59e+01 1hmt b.60.1.2 27198 1ci4A 89 5.61e+01 1qckA a.60.5.1 17970 2b9hA 353 5.61e+01 1x58A 62 5.68e+01 1vjxA 157 5.68e+01 a.25.1.1 100837 1x74A 360 5.75e+01 1o6zA 303 5.78e+01 c.2.1.5,d.162.1.1 81107,81108 1j1vA 94 5.80e+01 a.4.12.2 83981 5pal 109 5.81e+01 1a75A a.39.1.4 17215 1v3yA 192 5.88e+01 1cojA 212 5.88e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1zmoA 244 5.90e+01 2dafA 118 6.04e+01 1ka1A 357 6.09e+01 e.7.1.1 68369 1hqsA 423 6.12e+01 1iso c.77.1.1 61154 1vqzA 341 6.15e+01 5eau 548 6.20e+01 5eat a.102.4.1,a.128.1.3 18851,19443 2f4mB 61 6.22e+01 2guhA 214 6.27e+01 1ufwA 95 6.43e+01 d.58.7.1 99358 1p0yA 444 6.43e+01 a.166.1.1,b.85.7.3 87654,87655 1vi0A 206 6.45e+01 a.4.1.9,a.121.1.1 100720,100721 2g8lA 299 6.54e+01 2a6cA 83 6.56e+01 1d5yA 292 6.60e+01 1d5yA a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 1ct9A 553 6.88e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1zuhA 168 6.93e+01 1t95A 240 6.96e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1tgrA 52 7.02e+01 1k3xA 262 7.05e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2g2cA 167 7.10e+01 2bmoA 447 7.11e+01 1wh5A 80 7.14e+01 2g7gA 213 7.20e+01 1uj8A 77 7.24e+01 1mswD 883 7.24e+01 e.8.1.3 79427 1o4sA 389 7.24e+01 c.67.1.1 86620 1ah7 245 7.28e+01 1ah7 a.124.1.1 19339 2a25A 193 7.28e+01 1rktA 205 7.32e+01 a.4.1.9,a.121.1.1 97623,97624 1zdzA 302 7.34e+01 1wb0A 445 7.42e+01 1mla 309 7.64e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1m7yA 435 7.66e+01 c.67.1.4 78761 1yarH 217 7.71e+01 1lw1A 177 7.73e+01 a.152.1.1 74290 1pa2A 306 7.74e+01 1bgp a.93.1.1 18693 1eexA 554 7.76e+01 1dioA c.1.19.3 29650 1nn5A 215 7.85e+01 c.37.1.1 85892 1qc7A 101 8.03e+01 1qc7A a.118.14.1 18456 1pq1A 196 8.05e+01 f.1.4.1 94986 1po5A 476 8.07e+01 a.104.1.1 94963 1fljA 260 8.11e+01 2cba b.74.1.1 27954 1o8rA 94 8.29e+01 d.234.1.1 86677 1x47A 98 8.48e+01 1no4A 97 8.52e+01 h.1.24.1 85918 1kf6D 119 8.53e+01 f.21.2.2 72400 1n1fA 159 8.58e+01 a.26.1.3 79803 1t6fA 37 8.60e+01 h.1.28.1 106565 1jq5A 370 8.68e+01 e.22.1.2 67084 1yxmA 303 8.76e+01 2c4nA 250 8.77e+01 1kutA 230 8.81e+01 d.143.1.1 73017 1pme 380 8.83e+01 1hcl d.144.1.7 41653 1e3dB 542 8.84e+01 1h2rL e.18.1.1 59189 1c02A 166 8.87e+01 1qspA a.24.10.2 16633 1szhA 161 8.88e+01 a.226.1.1 106157 1r1uA 106 8.94e+01 a.4.5.5 104771 1x72A 334 8.94e+01 d.126.1.6 109495 1sh0A 510 9.00e+01 e.8.1.4 98876