# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ywfA 296 2.25e-01 1hlvA 131 2.76e-01 a.4.1.7,a.4.1.7 65854,65855 1s69A 124 3.47e-01 a.1.1.1 105305 1sedA 117 8.62e-01 a.219.1.1 105449 1whzA 70 1.03e+00 1rkbA 173 1.16e+00 1zljA 78 1.29e+00 1w2yA 229 1.31e+00 a.204.1.1 109140 1s9jA 341 1.63e+00 1pyaB 228 1.74e+00 1pyaB 1b8zA 90 1.83e+00 1huuA a.55.1.1 17902 1a41 234 2.01e+00 1a41 d.163.1.2 42174 1ugjA 141 2.01e+00 b.41.1.3 107826 2bjbA 462 2.18e+00 1ffyA 917 2.37e+00 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1x3lA 440 2.93e+00 1knvA 293 2.95e+00 c.52.1.7 68707 1p7tA 731 2.96e+00 c.1.13.1 94319 1z77A 200 3.50e+00 2cg4A 152 3.65e+00 1aua 296 3.82e+00 1aua a.5.3.1,c.13.1.1 16290,30882 1qh5A 260 4.07e+00 1qh5A d.157.1.2 42057 1u20A 212 4.32e+00 1zbsA 291 4.53e+00 1ekeA 230 4.65e+00 1ekeA c.55.3.1 33572 1g5cA 170 4.70e+00 1g5cA c.53.2.1 60264 1l9vA 317 4.71e+00 d.13.2.1,d.216.1.1 73760,73761 1n0wA 243 4.75e+00 c.37.1.11 79772 2cfaA 217 5.00e+00 1keaA 221 5.04e+00 a.96.1.2 68491 2cfxA 144 5.12e+00 2bsjA 133 5.61e+00 1kdgA 546 6.04e+00 c.3.1.2,d.16.1.1 77337,77338 1o4sA 389 6.59e+00 c.67.1.1 86620 1t2dA 322 6.61e+00 c.2.1.5,d.162.1.1 99084,99085 2ccmA 191 6.75e+00 1jnrA 643 6.81e+00 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1u9lA 70 6.86e+00 a.60.4.2 107751 2fjbA 643 6.87e+00 1t3qA 168 6.97e+00 a.56.1.1,d.15.4.2 106367,106368 1fvkA 189 7.70e+00 1fvkA c.47.1.13 90351 1wovA 250 8.02e+00 1l7vA 326 8.09e+00 f.22.1.1 73672 1v7nV 163 8.14e+00 a.26.1.2 100476 1yz4A 160 8.18e+00 1my6A 199 8.23e+00 a.2.11.1,d.44.1.1 85232,85233 2fnuA 375 8.51e+00 1u7kA 131 9.08e+00 1l6xB 34 9.11e+00 k.13.1.1 73644 1pb6A 212 9.17e+00 a.4.1.9,a.121.1.1 88017,88018 1i88A 389 9.43e+00 c.95.1.2,c.95.1.2 66070,66071 1jq5A 370 1.01e+01 e.22.1.2 67084 1neeA 138 1.05e+01 d.241.1.1,g.59.1.1 91841,91842 1iv3A 152 1.06e+01 d.79.5.1 76828 1ka2A 499 1.08e+01 d.92.1.5 77305 1pufA 77 1.13e+01 a.4.1.1 95131 2fexA 188 1.15e+01 1ta3B 303 1.17e+01 c.1.8.3 106732 5eau 548 1.18e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1v32A 101 1.21e+01 a.42.1.1 100277 1ri5A 298 1.26e+01 c.66.1.34 97502 2fx0A 201 1.27e+01 2fa8A 105 1.30e+01 1q0pA 223 1.34e+01 c.62.1.1 95507 1sd4A 126 1.39e+01 a.4.5.39 105428 2a97A 439 1.41e+01 1j55A 95 1.46e+01 a.39.1.2 77078 1tca 317 1.50e+01 1tca c.69.1.17 34726 1v96A 149 1.53e+01 1gu9A 177 1.56e+01 a.152.1.1 65540 1h3qA 140 1.62e+01 d.110.4.3 76652 1id0A 152 1.63e+01 d.122.1.3 66111 1lw1A 177 1.64e+01 a.152.1.1 74290 1li5A 461 1.66e+01 a.27.1.1,c.26.1.1 73912,73913 1ve4A 206 1.67e+01 1fnnA 389 1.67e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1je8A 82 1.78e+01 a.4.6.2 77108 3tmkA 216 1.81e+01 3tmkA c.37.1.1 31920 1mdc 133 1.82e+01 1hmt b.60.1.2 27198 5pal 109 1.83e+01 1a75A a.39.1.4 17215 1to2E 281 1.87e+01 1d5yA 292 1.95e+01 1d5yA a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 1ka1A 357 1.98e+01 e.7.1.1 68369 1zv1A 65 2.07e+01 1fjlA 81 2.21e+01 2hddA a.4.1.1 16017 1dciA 275 2.21e+01 1dciA c.14.1.3 30918 1wy9A 147 2.22e+01 1pmzA 86 2.23e+01 a.39.1.10 104195 1x42A 232 2.24e+01 2au5A 139 2.29e+01 1ci4A 89 2.32e+01 1qckA a.60.5.1 17970 1ok7A 366 2.38e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1nrvA 105 2.44e+01 d.93.1.1 86126 1f7uA 607 2.45e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1kutA 230 2.46e+01 d.143.1.1 73017 1uz5A 402 2.47e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1tkeA 224 2.49e+01 1kf6D 119 2.55e+01 f.21.2.2 72400 2c30A 321 2.61e+01 1io2A 213 2.64e+01 1ekeA c.55.3.1 62612 1wkaA 147 2.65e+01 2gaiA 633 2.74e+01 1h4vB 421 2.74e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1nn5A 215 2.81e+01 c.37.1.1 85892 1wy5A 317 2.91e+01 2gfnA 209 3.02e+01 1bed 181 3.02e+01 1fvkA c.47.1.13 90330 2vhbA 146 3.08e+01 2vhbA a.1.1.2 15629 1tdzA 272 3.08e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1fc3A 120 3.09e+01 1fc3A a.4.6.3 16237 1mla 309 3.10e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1dpgA 485 3.13e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1woyA 500 3.15e+01 1i7nA 309 3.15e+01 c.30.1.5,d.142.1.3 83681,83682 1pzgA 331 3.17e+01 c.2.1.5,d.162.1.1 95425,95426 1cs1A 386 3.17e+01 1ibjA c.67.1.3 34399 1u14A 172 3.21e+01 c.51.4.3 107579 1k8uA 90 3.22e+01 a.39.1.2 72181 1v3yA 192 3.26e+01 1o65A 246 3.30e+01 b.58.1.2 92544 1f1eA 154 3.36e+01 a.22.1.2 64927 1hm6A 346 3.39e+01 1avc a.65.1.1 18147 1yxmA 303 3.44e+01 1hqsA 423 3.45e+01 1iso c.77.1.1 61154 1cojA 212 3.47e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1s5jA 847 3.48e+01 1tgrA 52 3.53e+01 1l8nA 679 3.56e+01 c.1.8.10,d.92.2.2 84564,84565 1vj7A 393 3.59e+01 a.211.1.1,d.218.1.8 100801,100802 1lm5A 214 3.63e+01 d.211.2.1 74029 2c5rA 67 3.68e+01 1mswD 883 3.71e+01 e.8.1.3 79427 1ct9A 553 3.72e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1res 43 3.73e+01 1ret a.4.1.2 16023 1vjxA 157 3.74e+01 a.25.1.1 100837 2g7gA 213 3.80e+01 1bqbA 301 3.81e+01 1hyt d.92.1.2 58962 1t1jA 125 3.85e+01 c.137.1.1 106249 1tv8A 340 3.94e+01 c.1.28.3 107352 2g8lA 299 3.95e+01 1wzdA 215 3.99e+01 1pb1A 416 4.00e+01 c.77.1.1 88014 1y88A 199 4.01e+01 1jd1A 129 4.05e+01 1qu9A d.79.1.1 62890 1yh2A 175 4.06e+01 1y89A 238 4.08e+01 2cchB 260 4.10e+01 1rybA 212 4.11e+01 c.56.3.1 98098 1zuhA 168 4.20e+01 1oaoA 674 4.22e+01 e.26.1.2 86744 1v4sA 455 4.22e+01 c.55.1.3,c.55.1.3 100309,100310 1oz9A 150 4.27e+01 d.92.1.15 93808 2ahyA 110 4.34e+01 2h0uA 217 4.35e+01 1tuoA 464 4.35e+01 1ui5A 215 4.43e+01 a.4.1.9,a.121.1.1 107856,107857 1m3kA 392 4.48e+01 c.95.1.1,c.95.1.1 78565,78566 2gvkA 317 4.52e+01 1vh4A 435 4.57e+01 b.80.6.1 100640 1sfxA 109 4.66e+01 a.4.5.50 105505 1xk7A 408 4.67e+01 1rlzA 369 4.68e+01 c.31.1.1 104989 1w0dA 337 4.69e+01 2bmjA 178 4.71e+01 1vdlA 80 4.72e+01 a.5.2.1 108528 1wb0A 445 4.78e+01 1o6zA 303 4.94e+01 c.2.1.5,d.162.1.1 81107,81108 1j1vA 94 4.94e+01 a.4.12.2 83981 1pufB 73 4.95e+01 a.4.1.1 95132 2a25A 193 4.96e+01 1tg7A 971 4.96e+01 2gh1A 301 5.04e+01 2hddA 61 5.13e+01 2hddA a.4.1.1 15971 2fgqX 332 5.14e+01 2aeuA 374 5.14e+01 1eexB 224 5.22e+01 1dioB c.51.3.1 33213 1zmoA 244 5.23e+01 1cpcA 162 5.23e+01 1cpcA a.1.1.3 15643 1c52 131 5.24e+01 1c52 a.3.1.1 15810 1hruA 188 5.25e+01 1hruA d.115.1.1 40926 1vkeA 133 5.26e+01 a.152.1.2 108650 1bg4 302 5.28e+01 1taxA c.1.8.3 28806 1qc7A 101 5.33e+01 1qc7A a.118.14.1 18456 1khyA 148 5.35e+01 a.174.1.1 77410 1b5l 172 5.42e+01 1b5l a.26.1.3 16900 2cunA 410 5.43e+01 1no4A 97 5.45e+01 h.1.24.1 85918 1m1nA 491 5.55e+01 c.92.2.3 78417 1vf8A 377 5.61e+01 2h21A 440 5.64e+01 2fp4B 395 5.66e+01 1yemA 179 5.72e+01 1z2iA 358 5.80e+01 1pa2A 306 5.87e+01 1bgp a.93.1.1 18693 1m0kA 262 5.92e+01 f.13.1.1 78344 1ow1A 195 5.93e+01 b.131.1.3 93625 1zdzA 302 5.95e+01 1zd0A 150 5.97e+01 2ga1A 106 6.02e+01 1xx1A 285 6.02e+01 3thiA 371 6.14e+01 2thiA c.94.1.1 35792 1x9mA 698 6.17e+01 1m4tA 392 6.20e+01 c.95.1.1,c.95.1.1 78617,78618 2b8nA 429 6.25e+01 1u0jA 267 6.34e+01 c.37.1.20 107546 1rx0A 393 6.39e+01 a.29.3.1,e.6.1.1 98007,98008 1n1fA 159 6.52e+01 a.26.1.3 79803 1olmA 403 6.52e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1lmzA 187 6.60e+01 a.96.1.4 74037 2f1lA 187 6.65e+01 2bhoA 130 6.69e+01 1tafA 68 6.83e+01 1tafA a.22.1.3 16481 2cobA 70 6.85e+01 1l5pA 93 6.86e+01 d.15.4.1 73598 1j5wA 298 6.86e+01 d.104.1.1 71589 1wgzA 510 6.92e+01 1jqlB 140 6.97e+01 c.37.1.20 63234 2a6cA 83 6.99e+01 1qd1A 325 7.01e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1pne 140 7.02e+01 1pne d.110.1.1 40866 1po5A 476 7.02e+01 a.104.1.1 94963 1or4A 178 7.11e+01 a.1.1.2 93447 1yiiA 320 7.11e+01 1mxrA 375 7.12e+01 a.25.1.2 85197 1p0yA 444 7.14e+01 a.166.1.1,b.85.7.3 87654,87655 1wzuA 300 7.18e+01 1wu4A 396 7.26e+01 1hs7A 97 7.27e+01 1hs7A a.47.2.1 61236 1wkuA 254 7.28e+01 1qb2A 109 7.30e+01 1qb2A a.36.1.1 17125 1szhA 161 7.32e+01 a.226.1.1 106157 1msk 331 7.34e+01 1msk d.173.1.1 42495 1s28A 132 7.39e+01 d.198.1.1 105223 1vls 146 7.44e+01 1vls a.24.2.1 16532 2cu3A 64 7.51e+01 1gk9B 557 7.57e+01 6ldh 330 7.58e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 1z8uA 102 7.60e+01 3kvt 115 7.62e+01 1t1dA d.42.1.2 38642 2dafA 118 7.68e+01 1qz8A 113 7.71e+01 b.140.1.1 96619 1wudA 89 7.71e+01 1cqxA 403 7.72e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1yzxA 226 7.78e+01 1k3xA 262 7.78e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1alu 186 7.80e+01 1alu a.26.1.1 16826 2dbbA 151 7.83e+01 2gtsA 86 8.08e+01 2c7nA 74 8.11e+01 1tffA 234 8.12e+01 d.3.1.11 106854 1wh5A 80 8.13e+01 2g7uA 257 8.13e+01 1x47A 98 8.22e+01 2av5A 120 8.25e+01 1t6fA 37 8.34e+01 h.1.28.1 106565 2f5uA 447 8.35e+01 1kveA 63 8.39e+01 1kveA d.70.1.2 39590 1w85A 368 8.45e+01 1ej6D 418 8.45e+01 i.7.1.1 45970 2if1 126 8.47e+01 2if1 d.64.1.1 39547 1xuuA 349 8.50e+01 2d3dA 88 8.52e+01 1j6wA 175 8.54e+01 1j98A d.185.1.2 62663 1whvA 100 8.55e+01 2c4nA 250 8.63e+01 2guhA 214 8.65e+01 1jy5A 212 8.66e+01 d.124.1.1 71940 1yx1A 264 8.67e+01 1gpmA 525 8.67e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1zy4A 303 8.69e+01 1r0rE 274 8.71e+01 c.41.1.1 96735 1sur 215 8.84e+01 1sur c.26.2.2 31620 1m7yA 435 8.88e+01 c.67.1.4 78761 1iugA 352 8.99e+01 c.67.1.3 90699