# TARGET T0330 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0330.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.54411 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 L 0.064 0.015 0.003 0.011 0.104 0.803 2 K 0.093 0.017 0.001 0.011 0.050 0.828 3 V 0.064 0.010 0.028 0.535 0.056 0.307 4 E 0.053 0.004 0.041 0.705 0.067 0.129 5 S 0.013 0.001 0.040 0.903 0.026 0.017 6 M 0.006 0.001 0.013 0.961 0.010 0.009 7 N 0.003 0.001 0.009 0.977 0.005 0.006 8 R 0.001 0.001 0.003 0.992 0.002 0.003 9 R 0.001 0.001 0.001 0.996 0.001 0.001 10 V 0.001 0.001 0.001 0.997 0.001 0.001 11 L 0.001 0.001 0.001 0.997 0.001 0.001 12 A 0.001 0.001 0.003 0.993 0.002 0.001 13 D 0.001 0.001 0.004 0.991 0.004 0.001 14 A 0.001 0.001 0.005 0.987 0.005 0.002 15 L 0.001 0.001 0.007 0.981 0.006 0.004 16 I 0.006 0.001 0.019 0.954 0.012 0.009 17 E 0.014 0.001 0.025 0.926 0.018 0.016 18 V 0.038 0.004 0.022 0.864 0.030 0.042 19 Y 0.064 0.012 0.021 0.573 0.103 0.227 20 G 0.071 0.022 0.020 0.211 0.270 0.405 21 T 0.071 0.032 0.018 0.094 0.464 0.321 22 E 0.060 0.017 0.022 0.050 0.503 0.348 23 G 0.047 0.021 0.039 0.039 0.513 0.340 24 S 0.070 0.033 0.048 0.038 0.545 0.266 25 T 0.077 0.026 0.134 0.039 0.501 0.223 26 G 0.134 0.037 0.086 0.041 0.458 0.244 27 S 0.185 0.027 0.104 0.045 0.418 0.221 28 H 0.207 0.015 0.059 0.033 0.364 0.323 29 D 0.271 0.014 0.048 0.035 0.313 0.319 30 F 0.364 0.043 0.051 0.043 0.235 0.265 31 S 0.441 0.043 0.040 0.040 0.199 0.237 32 G 0.575 0.013 0.047 0.028 0.169 0.168 33 K 0.429 0.030 0.060 0.096 0.191 0.195 34 M 0.312 0.057 0.045 0.124 0.238 0.224 35 D 0.096 0.013 0.027 0.268 0.290 0.306 36 G 0.022 0.001 0.028 0.726 0.146 0.076 37 A 0.076 0.004 0.024 0.711 0.122 0.062 38 I 0.140 0.006 0.013 0.786 0.037 0.018 39 I 0.118 0.003 0.007 0.849 0.012 0.011 40 Y 0.033 0.001 0.004 0.953 0.005 0.004 41 E 0.021 0.001 0.004 0.967 0.005 0.003 42 V 0.008 0.001 0.005 0.975 0.006 0.005 43 L 0.005 0.002 0.010 0.953 0.019 0.012 44 S 0.007 0.002 0.031 0.876 0.046 0.038 45 N 0.006 0.002 0.061 0.731 0.129 0.072 46 V 0.007 0.003 0.068 0.538 0.212 0.172 47 G 0.008 0.003 0.020 0.037 0.262 0.671 48 L 0.027 0.019 0.027 0.053 0.266 0.609 49 E 0.048 0.020 0.027 0.146 0.141 0.618 50 R 0.012 0.002 0.077 0.785 0.048 0.075 51 A 0.006 0.001 0.065 0.879 0.028 0.021 52 E 0.006 0.001 0.077 0.878 0.026 0.013 53 I 0.005 0.002 0.032 0.929 0.019 0.014 54 A 0.005 0.001 0.033 0.909 0.032 0.020 55 D 0.003 0.001 0.028 0.908 0.036 0.024 56 K 0.002 0.001 0.022 0.898 0.035 0.041 57 F 0.004 0.002 0.023 0.838 0.065 0.068 58 D 0.001 0.001 0.026 0.905 0.035 0.032 59 K 0.001 0.001 0.018 0.962 0.011 0.008 60 A 0.001 0.001 0.012 0.968 0.010 0.009 61 K 0.001 0.001 0.005 0.977 0.006 0.011 62 E 0.001 0.001 0.002 0.991 0.003 0.004 63 T 0.001 0.001 0.001 0.994 0.002 0.003 64 Y 0.001 0.001 0.001 0.997 0.001 0.001 65 I 0.001 0.001 0.001 0.998 0.001 0.001 66 A 0.001 0.001 0.001 0.998 0.001 0.001 67 L 0.001 0.001 0.001 0.997 0.001 0.001 68 F 0.001 0.001 0.002 0.992 0.003 0.002 69 R 0.001 0.001 0.009 0.977 0.009 0.004 70 E 0.003 0.001 0.010 0.957 0.019 0.010 71 R 0.006 0.002 0.014 0.810 0.056 0.113 72 A 0.011 0.011 0.018 0.363 0.130 0.466 73 R 0.030 0.014 0.027 0.136 0.243 0.550 74 R 0.012 0.003 0.210 0.447 0.208 0.120 75 E 0.023 0.002 0.258 0.411 0.195 0.110 76 D 0.059 0.006 0.328 0.330 0.171 0.106 77 I 0.091 0.023 0.057 0.335 0.110 0.383 78 T 0.105 0.034 0.023 0.218 0.090 0.529 79 L 0.032 0.005 0.003 0.013 0.057 0.891