# List of top-scoring protein chains for T0330.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bw6A 56 1.17e-01 1bw6A a.4.1.7 16052 1hlvA 131 4.03e-01 a.4.1.7,a.4.1.7 65854,65855 1x3lA 440 1.09e+00 2cpmA 94 1.90e+00 1x64A 89 2.22e+00 1iznB 277 2.77e+00 e.43.1.2 83848 1pyaB 229 4.31e+00 1pyaB 2f1lA 187 4.88e+00 1gnsA 263 8.12e+00 c.41.1.1 70289 1sub 275 8.36e+00 1gci c.41.1.1 32513 1suaA 266 8.61e+00 1gci c.41.1.1 32531 1ubnA 275 8.61e+00 1gci c.41.1.1 32535 1spbS 266 8.65e+00 1gci c.41.1.1 32532 1duiA 266 8.65e+00 1gci c.41.1.1 32530 2sniE 275 8.66e+00 1gci c.41.1.1 32529 1s02 275 8.67e+00 1gci c.41.1.1 32525 1sup 275 8.67e+00 1gci c.41.1.1 32510 1sue 266 8.71e+00 1gci c.41.1.1 32520 1to2E 281 8.74e+00 1suc 275 8.79e+00 1gci c.41.1.1 32521 1v5iA 275 8.89e+00 1kf6B 243 9.05e+00 a.1.2.1,d.15.4.2 72397,72398 1zhpA 238 1.00e+01 1zjdA 237 1.00e+01 1xxfA 238 1.01e+01 1xx9A 238 1.06e+01 1dclA 216 1.09e+01 8fabA b.1.1.1,b.1.1.2 20565,21472 1t3qA 168 1.10e+01 a.56.1.1,d.15.4.2 106367,106368 1zlrA 237 1.13e+01 1zhrA 238 1.13e+01 1zhmA 238 1.14e+01 2mcg1 216 1.15e+01 8fabA 1mciA 216 1.15e+01 8fabA b.1.1.1,b.1.1.2 20581,21488 1zslA 238 1.17e+01 1m6pA 152 1.22e+01 1m6pA b.64.1.1 27519 1keoA 154 1.23e+01 b.64.1.1 68534 1mcoL 216 1.40e+01 8fabA b.1.1.1,b.1.1.2 20563,21468 2fk6A 320 1.44e+01 1nmrA 85 1.54e+01 a.144.1.1 91992 1ukxA 137 1.64e+01 d.20.1.3 107919 1r6kA 207 1.81e+01 b.91.1.1 97152 1r6nA 211 1.83e+01 b.91.1.1 97157 1nsj 205 1.86e+01 1nsj c.1.2.4 28560 1vz0A 230 1.87e+01 a.4.14.1,d.268.1.1 108929,108930 1zlkA 95 1.92e+01 1dl3A 203 2.07e+01 1nsj c.1.2.4 28561 1y44A 320 2.14e+01 1t0yA 122 2.27e+01 d.15.1.1 99066 1k0eA 453 2.45e+01 d.161.1.1 67938 1l5aA 436 2.59e+01 c.43.1.2,c.43.1.2 75923,75924 2f83A 625 2.87e+01 1or5A 83 2.99e+01 a.28.1.1 87331 1nvtA 287 3.01e+01 c.2.1.7,c.58.1.5 86270,86271 1ywfA 296 3.16e+01 1c3lA 274 3.17e+01 1gci c.41.1.1 32492 2f3oA 776 3.18e+01 1h3qA 140 3.25e+01 d.110.4.3 76652 1p9gA 41 3.27e+01 g.3.1.1 104091 1fcdC 174 3.30e+01 1fcdC a.3.1.4,a.3.1.4 15966,15967 2btlA 134 3.58e+01 1zljA 78 3.58e+01 1f99A 162 3.61e+01 1cpcA a.1.1.3 59722 1ktpA 162 3.64e+01 a.1.1.3 72990 1ha7A 162 3.66e+01 a.1.1.3 70935 1gh0A 162 3.72e+01 1cpcA a.1.1.3 60491 1jboA 162 3.77e+01 a.1.1.3 84150 1zkgA 212 3.79e+01 1sbt 275 3.82e+01 1gci c.41.1.1 32538 1z77A 200 4.01e+01 1xahA 354 4.14e+01 1kmaA 55 4.28e+01 g.68.1.1 72743 1dhs 361 4.46e+01 1dhs c.31.1.1 31727 1rlzA 369 4.46e+01 c.31.1.1 104989 2bxxA 134 4.68e+01 2bjbA 462 4.76e+01 2au5A 139 4.78e+01 1avt 274 4.78e+01 1gci c.41.1.1 32488 1r0rE 274 4.80e+01 c.41.1.1 96735 1yu6A 275 4.81e+01 1scnE 276 4.82e+01 1gci c.41.1.1 32490 1whzA 70 4.82e+01 1kevA 351 5.01e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1w2yA 229 5.51e+01 a.204.1.1 109140 1ha7B 172 5.57e+01 a.1.1.3 70936 1tazA 365 5.70e+01 a.211.1.2 106734 1sxl 97 5.75e+01 1b7fA d.58.7.1 39180 1tle 58 5.80e+01 1klo g.3.11.2 44329 1ep1B 261 5.94e+01 1ep2B b.43.4.2,c.25.1.3 25665,31555 1xubA 298 5.95e+01 1ep3B 262 5.98e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1u1wA 298 5.98e+01 2bh9A 489 6.00e+01 1bu8A 452 6.05e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1ok8A 394 6.10e+01 b.1.18.4,f.10.1.1 93236,93237 1qkiA 514 6.12e+01 1dpgA c.2.1.3,d.81.1.5 30080,39995 1tg8A 395 6.12e+01 b.1.18.4,f.10.1.1 106892,106893 1tgeA 395 6.12e+01 b.1.18.4,f.10.1.1 106894,106895 1tuuA 399 6.17e+01 1g99A 408 6.28e+01 1g99A c.55.1.2,c.55.1.2 33457,33458 1fhe 217 6.28e+01 1b8xA a.45.1.1,c.47.1.5 17726,33020 1wy5A 317 6.31e+01 1xqwA 293 6.40e+01 1ufwA 95 6.40e+01 d.58.7.1 99358 2sxl 88 6.46e+01 1b7fA d.58.7.1 39179 1tbrR 103 6.66e+01 1tbrR g.68.1.1,g.68.1.1 44707,44708 1pveA 72 6.68e+01 a.189.1.1 104322 1lrzA 426 6.77e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1y9iA 178 6.81e+01 1gv3A 248 6.87e+01 a.2.11.1,d.44.1.1 70585,70586 1b7fA 168 6.89e+01 1b7fA d.58.7.1,d.58.7.1 39169,39170 1mw5A 187 7.06e+01 d.259.1.1 91477 1pgjA 478 7.07e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1zd0A 150 7.12e+01 1v96A 149 7.17e+01 1n0wA 243 7.22e+01 c.37.1.11 79772 3sxlA 184 7.42e+01 1b7fA d.58.7.1,d.58.7.1 39173,39174 1xrrA 293 7.43e+01 2afaA 425 7.57e+01 1xqvA 293 7.63e+01 1xroA 293 7.63e+01 1mtzA 293 7.63e+01 c.69.1.7 79467 1xrlA 293 7.65e+01 1x57A 91 8.20e+01 1sctB 151 8.28e+01 3sdhA a.1.1.2 15003 2fheA 216 8.30e+01 1b8xA a.45.1.1,c.47.1.5 17724,33018 1hiqB 30 8.33e+01 g.1.1.1 43936 1p58A 495 8.47e+01 i.17.1.1 94127 1sojI 420 8.72e+01 a.211.1.2 98950 2f4mB 61 8.92e+01