# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ywfA 296 2.80e-01 1hlvA 131 3.82e-01 a.4.1.7,a.4.1.7 65854,65855 1s69A 124 8.28e-01 a.1.1.1 105305 1huuA 90 1.38e+00 1huuA a.55.1.1 17897 1ugjA 141 2.33e+00 b.41.1.3 107826 2cfxA 144 2.88e+00 1w2yA 229 2.97e+00 a.204.1.1 109140 1z77A 200 3.26e+00 1s9jA 341 3.46e+00 1ekeA 230 3.51e+00 1ekeA c.55.3.1 33572 1zljA 78 4.05e+00 1sedA 117 4.12e+00 a.219.1.1 105449 1whzA 70 4.25e+00 1rkbA 173 4.50e+00 1x3lA 440 4.77e+00 1pyaB 228 5.27e+00 1pyaB 1b8zA 90 5.43e+00 1huuA a.55.1.1 17902 1a41 234 5.82e+00 1a41 d.163.1.2 42174 2cfaA 217 6.34e+00 2bjbA 462 6.41e+00 1pveA 72 7.58e+00 a.189.1.1 104322 1p7tA 731 9.39e+00 c.1.13.1 94319 1pb6A 212 9.82e+00 a.4.1.9,a.121.1.1 88017,88018 1jf2A 195 1.03e+01 1ej3A a.39.1.5 62930 1qh5A 260 1.04e+01 1qh5A d.157.1.2 42057 1el4A 195 1.04e+01 1ej3A a.39.1.5 59453 1qh3A 260 1.05e+01 1qh5A d.157.1.2 42059 1knvA 293 1.05e+01 c.52.1.7 68707 1ldg 316 1.05e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1rtxA 123 1.07e+01 a.1.1.1 97827 1d8cA 723 1.08e+01 1d8cA c.1.13.1 29325 1u20A 212 1.09e+01 1zbsA 291 1.17e+01 2cg4A 152 1.18e+01 1aua 296 1.19e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1v7nV 163 1.21e+01 a.26.1.2 100476 1g5cA 170 1.26e+01 1g5cA c.53.2.1 60264 1keaA 221 1.27e+01 a.96.1.2 68491 1n0wA 243 1.41e+01 c.37.1.11 79772 1tca 317 1.42e+01 1tca c.69.1.17 34726 2a97A 439 1.44e+01 2fnuA 375 1.46e+01 2fexA 188 1.54e+01 1ydnA 295 1.55e+01 1yz4A 160 1.70e+01 1l9vA 317 1.72e+01 d.13.2.1,d.216.1.1 73760,73761 1kdgA 546 1.73e+01 c.3.1.2,d.16.1.1 77337,77338 1i88A 389 1.78e+01 c.95.1.2,c.95.1.2 66070,66071 2gfnA 209 1.79e+01 1nktA 922 1.81e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 1oqyA 368 1.85e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1my6A 199 1.89e+01 a.2.11.1,d.44.1.1 85232,85233 1zdc 35 2.02e+01 1fc2C k.13.1.1 46434 1bi5A 389 2.02e+01 1bi5A c.95.1.2,c.95.1.2 35985,35986 2c30A 321 2.05e+01 2ahyA 110 2.07e+01 1y63A 184 2.23e+01 1wkaA 147 2.30e+01 1pgjA 478 2.36e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1g99A 408 2.37e+01 1g99A c.55.1.2,c.55.1.2 33457,33458 1t3qA 168 2.40e+01 a.56.1.1,d.15.4.2 106367,106368 1d8bA 81 2.46e+01 1d8bA a.60.8.1 18094 1sd4A 126 2.48e+01 a.4.5.39 105428 1v96A 149 2.51e+01 1fvkA 189 2.54e+01 1fvkA c.47.1.13 90351 1ta3B 303 2.56e+01 c.1.8.3 106732 1t2dA 322 2.68e+01 c.2.1.5,d.162.1.1 99084,99085 1acvA 189 2.75e+01 1fvkA c.47.1.13 90328 1l6xB 34 2.75e+01 k.13.1.1 73644 1iv3A 152 2.80e+01 d.79.5.1 76828 1sfxA 109 2.96e+01 a.4.5.50 105505 1ji8A 111 2.98e+01 d.203.1.1 66733 1neeA 138 3.04e+01 d.241.1.1,g.59.1.1 91841,91842 1wovA 250 3.06e+01 2f1lA 187 3.12e+01 1fnnA 389 3.15e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1u7kA 131 3.16e+01 1io2A 213 3.19e+01 1ekeA c.55.3.1 62612 1alu 186 3.19e+01 1alu a.26.1.1 16826 1ffyA 917 3.22e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1jt6A 188 3.26e+01 a.4.1.9,a.121.1.1 67247,67248 1vj7A 393 3.46e+01 a.211.1.1,d.218.1.8 100801,100802 1ri5A 298 3.47e+01 c.66.1.34 97502 1ukz 203 3.47e+01 1zin c.37.1.1 31840 1wkuA 254 3.49e+01 1lxa 262 3.53e+01 1lxa b.81.1.1 28052 1uz5A 402 3.55e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1jqlB 140 3.64e+01 c.37.1.20 63234 1dciA 275 3.68e+01 1dciA c.14.1.3 30918 1f7uA 607 3.69e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1to2E 281 3.72e+01 3tmkA 216 3.72e+01 3tmkA c.37.1.1 31920 1pufA 77 3.74e+01 a.4.1.1 95131 1lw6E 281 3.76e+01 c.41.1.1 74293 1h3qA 140 3.80e+01 d.110.4.3 76652 1lm5A 214 3.81e+01 d.211.2.1 74029 1p49A 562 3.81e+01 c.76.1.2 94089 1a8b 318 3.88e+01 1avc a.65.1.1 18171 1l7vA 326 3.91e+01 f.22.1.1 73672 1hruA 188 3.94e+01 1hruA d.115.1.1 40926 1z8uA 102 3.96e+01 1gv3A 248 3.97e+01 a.2.11.1,d.44.1.1 70585,70586 1jnrA 643 4.01e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1ri7A 171 4.02e+01 a.4.5.32,d.58.4.2 97504,97505 2au5A 139 4.09e+01 1y01A 102 4.12e+01 1ui5A 215 4.12e+01 a.4.1.9,a.121.1.1 107856,107857 1cs1A 386 4.20e+01 1ibjA c.67.1.3 34399 2fx0A 201 4.21e+01 1rlzA 369 4.22e+01 c.31.1.1 104989 2fjbA 643 4.22e+01 1dhs 344 4.27e+01 1dhs c.31.1.1 31727 1c52 131 4.32e+01 1c52 a.3.1.1 15810 2fa8A 105 4.41e+01 2fd5A 180 4.41e+01 1u3aA 189 4.42e+01 1ayl 541 4.48e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1l8nA 679 4.49e+01 c.1.8.10,d.92.2.2 84564,84565 1i74A 309 4.56e+01 1i74A c.107.1.1 61867 2b3oA 532 4.58e+01 1paqA 189 4.64e+01 a.118.1.14 94413 1ka2A 499 4.69e+01 d.92.1.5 77305 1pmzA 86 4.72e+01 a.39.1.10 104195 1q0pA 223 4.75e+01 c.62.1.1 95507 1t1jA 125 4.76e+01 c.137.1.1 106249 1j55A 95 4.83e+01 a.39.1.2 77078 2ran 316 4.83e+01 1avc a.65.1.1 18170 1b72B 87 4.85e+01 1akhA a.4.1.1 16001 1wy5A 317 4.88e+01 1x42A 232 4.95e+01 2cmxA 118 5.05e+01 1deeG 54 5.07e+01 1fc2C a.8.1.1 16343 1li5A 461 5.09e+01 a.27.1.1,c.26.1.1 73912,73913 1v32A 101 5.18e+01 a.42.1.1 100277 1cjgA 62 5.20e+01 1pru a.35.1.5 17112 1res 43 5.27e+01 1ret a.4.1.2 16023 2aeuA 374 5.27e+01 1id0A 152 5.33e+01 d.122.1.3 66111 2a8aA 439 5.39e+01 1ewqA 765 5.40e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1t0gA 109 5.47e+01 d.120.1.2 99063 2cchB 260 5.63e+01 2gsfA 373 5.75e+01 1je8A 82 5.85e+01 a.4.6.2 77108 1jy5A 212 5.88e+01 d.124.1.1 71940 1x74A 360 5.95e+01 1sw5A 275 6.12e+01 c.94.1.1 106069 1dm0A 287 6.14e+01 1dm0A d.165.1.2 42227 1ax4A 467 6.15e+01 1ax4A c.67.1.2 34391 1li5B 461 6.19e+01 a.27.1.1,c.26.1.1 73914,73915 1ve4A 206 6.26e+01 1u9lA 70 6.30e+01 a.60.4.2 107751 1u14A 172 6.30e+01 c.51.4.3 107579 1tv8A 340 6.35e+01 c.1.28.3 107352 1ow1A 195 6.50e+01 b.131.1.3 93625 1oyiA 82 6.69e+01 a.4.5.19 93729 1nrvA 105 6.69e+01 d.93.1.1 86126 2h21A 440 6.74e+01 1fjlA 81 6.84e+01 2hddA a.4.1.1 16017 1y89A 238 6.94e+01 2c5rA 67 6.97e+01 2b9hA 353 6.97e+01 1yh2A 175 7.03e+01 1dm5A 315 7.04e+01 1avc a.65.1.1 18186 1ukxA 137 7.07e+01 d.20.1.3 107919 1vi0A 206 7.13e+01 a.4.1.9,a.121.1.1 100720,100721 2fgqX 332 7.16e+01 1rktA 205 7.21e+01 a.4.1.9,a.121.1.1 97623,97624 1e54A 332 7.21e+01 1e54A f.4.3.1 59258 1ufwA 95 7.32e+01 d.58.7.1 99358 5eau 548 7.34e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1p5hA 428 7.41e+01 c.123.1.1 87802 2fw2A 260 7.42e+01 2ccmA 191 7.45e+01 2dafA 118 7.48e+01 1ci4A 89 7.49e+01 1qckA a.60.5.1 17970 1sra 151 7.53e+01 1sra a.39.1.3 17190 1yiiA 320 7.55e+01 1k8uA 90 7.55e+01 a.39.1.2 72181 1m6eX 359 7.55e+01 c.66.1.35 91188 1oj7A 408 7.56e+01 e.22.1.2 103971 1hqsA 423 7.56e+01 1iso c.77.1.1 61154 2bjcA 62 7.57e+01 2cmd 312 7.58e+01 2cmd c.2.1.5,d.162.1.1 30135,42102 1q8dA 108 7.61e+01 a.228.1.1 104554 1mswD 883 7.61e+01 e.8.1.3 79427 1qgxA 357 7.73e+01 1qgxA e.7.1.1 42973 1mba 147 7.73e+01 2fal a.1.1.2 15149 1ka1A 357 7.73e+01 e.7.1.1 68369 1oaoA 674 7.77e+01 e.26.1.2 86744 1j1vA 94 7.80e+01 a.4.12.2 83981 2guhA 214 7.87e+01 1pufB 73 7.94e+01 a.4.1.1 95132 1hkkA 364 7.97e+01 c.1.8.5,d.26.3.1 90634,90635 1cojA 212 7.99e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1ok7A 366 8.04e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1mla 309 8.04e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1mdc 133 8.12e+01 1hmt b.60.1.2 27198 2gaiA 633 8.19e+01 1vjxA 157 8.30e+01 a.25.1.1 100837 1o4sA 389 8.36e+01 c.67.1.1 86620 2polA 366 8.37e+01 2polA d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 1x58A 62 8.39e+01 1c3wA 222 8.44e+01 1c3wA f.13.1.1 43405 1k3xA 262 8.47e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1w0bA 102 8.48e+01 a.7.11.1 108985 1v3yA 192 8.50e+01 1a04A 215 8.52e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 2a25A 193 8.55e+01 2g2cA 167 8.62e+01 1mmiA 366 8.70e+01 d.131.1.1,d.131.1.1,d.131.1.1 91309,91310,91311 5pal 109 8.81e+01 1a75A a.39.1.4 17215 1sup 275 8.87e+01 1gci c.41.1.1 32510 1zmoA 244 8.91e+01 1yl31 118 8.98e+01 1s6cA 183 8.98e+01 a.39.1.5 98594