# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hlvA 131 8.70e-02 a.4.1.7,a.4.1.7 65854,65855 1x3lA 440 6.76e-01 2au5A 139 7.00e-01 1v96A 149 7.55e-01 1r5jA 337 1.39e+00 c.77.1.5 97097 1w2yA 229 1.94e+00 a.204.1.1 109140 1pyaB 228 2.87e+00 1pyaB 2fpnA 216 3.28e+00 1whvA 100 3.57e+00 1x3kA 152 3.82e+00 1t3qA 168 3.82e+00 a.56.1.1,d.15.4.2 106367,106368 1xsvA 113 4.24e+00 1v9sA 208 4.26e+00 1htwA 158 4.79e+00 c.37.1.18 71083 1pveA 72 5.18e+00 a.189.1.1 104322 1k3yA 221 6.98e+00 a.45.1.1,c.47.1.5 77245,77246 2f1lA 187 7.23e+00 2bxxA 134 7.28e+00 1z2iA 358 7.58e+00 1paqA 189 8.69e+00 a.118.1.14 94413 1gv3A 248 8.97e+00 a.2.11.1,d.44.1.1 70585,70586 1rktA 205 8.98e+00 a.4.1.9,a.121.1.1 97623,97624 1rf8B 100 9.00e+00 a.210.1.1 97371 2gfnA 209 9.37e+00 1ok8A 394 9.83e+00 b.1.18.4,f.10.1.1 93236,93237 1zljA 78 1.09e+01 1smtA 122 1.14e+01 1smtA a.4.5.5 16109 1pufB 73 1.16e+01 a.4.1.1 95132 1oqyA 368 1.20e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1b72B 87 1.24e+01 1akhA a.4.1.1 16001 1t0gA 109 1.27e+01 d.120.1.2 99063 1w0bA 102 1.32e+01 a.7.11.1 108985 1r1tA 122 1.33e+01 a.4.5.5 104769 2aaxA 275 1.38e+01 1u20A 212 1.44e+01 1y01A 102 1.44e+01 2cg4A 152 1.45e+01 1o97C 264 1.46e+01 c.26.2.3 81232 1y82A 157 1.46e+01 2cfxA 144 1.48e+01 2af6A 258 1.54e+01 1res 43 1.55e+01 1ret a.4.1.2 16023 1z8uA 102 1.55e+01 1huuA 90 1.63e+01 1huuA a.55.1.1 17897 1r1dA 247 1.66e+01 c.69.1.29 96813 1r69 69 1.69e+01 1r69 a.35.1.2 17028 1kdgA 546 1.70e+01 c.3.1.2,d.16.1.1 77337,77338 1tqhA 247 1.72e+01 c.69.1.29 107225 1zklA 353 1.73e+01 1sqiA 393 1.74e+01 d.32.1.3,d.32.1.3 105914,105915 1b8zA 90 1.76e+01 1huuA a.55.1.1 17902 1s69A 124 1.80e+01 a.1.1.1 105305 2vhbA 146 1.82e+01 2vhbA a.1.1.2 15629 2bsjA 133 1.90e+01 1vqzA 341 2.01e+01 1k8kC 372 2.03e+01 b.69.4.1 68308 1t1jA 125 2.05e+01 c.137.1.1 106249 1ui5A 215 2.07e+01 a.4.1.9,a.121.1.1 107856,107857 2af4C 333 2.21e+01 1zq1C 633 2.22e+01 2bshA 125 2.23e+01 1lw6E 281 2.29e+01 c.41.1.1 74293 1je8A 82 2.31e+01 a.4.6.2 77108 1whzA 70 2.39e+01 1t17A 148 2.46e+01 1jt6A 188 2.49e+01 a.4.1.9,a.121.1.1 67247,67248 1my6A 199 2.49e+01 a.2.11.1,d.44.1.1 85232,85233 1fzrA 138 2.49e+01 1fzrA c.52.1.17 33336 1sup 275 2.62e+01 1gci c.41.1.1 32510 1e79H 146 2.63e+01 1e79H a.2.10.1,b.93.1.1 15721,28438 2bnuA 203 2.65e+01 1x42A 232 2.66e+01 1oapA 109 2.70e+01 d.79.7.1 92706 1ufwA 95 2.70e+01 d.58.7.1 99358 2ax8A 256 2.71e+01 1to2E 281 2.79e+01 1ugjA 141 2.90e+01 b.41.1.3 107826 1ej6D 418 2.95e+01 i.7.1.1 45970 1yh2A 175 3.00e+01 1kc6A 257 3.01e+01 c.52.1.19 68419 1bsmA 201 3.02e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1f3aA 222 3.04e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1u0sA 86 3.11e+01 d.58.24.1 107565 1wmmA 145 3.13e+01 1u9lA 70 3.23e+01 a.60.4.2 107751 1lxa 262 3.40e+01 1lxa b.81.1.1 28052 1f9mA 112 3.46e+01 1erv c.47.1.1 32736 1m0dA 138 3.46e+01 c.52.1.17 74354 1tp4A 97 3.47e+01 a.189.1.1 107183 1neq 74 3.50e+01 1neq a.35.1.2 17063 1x58A 62 3.53e+01 1avmA 201 3.59e+01 1avmA a.2.11.1,d.44.1.1 15782,38745 1y7jA 53 3.63e+01 1lghB 45 3.65e+01 1lghB f.3.1.1 43734 1u3aA 189 3.69e+01 2ax9A 256 3.79e+01 1fvkA 189 3.95e+01 1fvkA c.47.1.13 90351 2fv6A 52 3.95e+01 1rkbA 173 3.96e+01 1ldg 316 3.97e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1oo0B 110 4.00e+01 d.58.7.1 87183 1ef1A 294 4.00e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 2dbbA 151 4.13e+01 2f4mB 61 4.21e+01 1acvA 189 4.34e+01 1fvkA c.47.1.13 90328 1fyxA 149 4.38e+01 1fyvA c.23.2.1 31128 1rtxA 123 4.38e+01 a.1.1.1 97827 1eg2A 319 4.42e+01 1eg2A c.66.1.11 34249 1gen 218 4.48e+01 1gen b.66.1.1 27536 1faaA 124 4.50e+01 1erv c.47.1.1 32738 2guhA 214 4.62e+01 1upaA 573 4.70e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1idsA 207 4.78e+01 1avmA a.2.11.1,d.44.1.1 15722,38730 4bcl 366 4.81e+01 4bcl b.75.1.1 27968 1d8cA 723 4.82e+01 1d8cA c.1.13.1 29325 1e6bA 221 4.87e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1l1sA 113 4.92e+01 c.114.1.1 73484 1ylqA 96 4.95e+01 1t7rA 269 4.96e+01 a.123.1.1 106635 1cjgA 62 5.02e+01 1pru a.35.1.5 17112 1p7tA 731 5.06e+01 c.1.13.1 94319 1t2dA 322 5.10e+01 c.2.1.5,d.162.1.1 99084,99085 1dzfA 215 5.14e+01 1dzfA c.52.3.1,d.78.1.1 33344,39753 1ka8A 100 5.17e+01 a.4.5.20 72241 1sedA 117 5.24e+01 a.219.1.1 105449 1fjgQ 105 5.28e+01 1fjfQ b.40.4.5 25352 2ez6A 221 5.29e+01 1wkaA 147 5.30e+01 1s7kA 182 5.32e+01 1ydnA 295 5.35e+01 2ax6A 256 5.37e+01 2fkiA 126 5.39e+01 1gakA 141 5.44e+01 1gakA a.19.1.1 16415 2rslA 140 5.52e+01 2rslA c.53.1.1 33345 2glfA 450 5.57e+01 2f4eA 180 5.57e+01 1j75A 67 5.65e+01 a.4.5.19 62673 1lfaA 187 5.69e+01 1ido c.62.1.1 34122 1k6kA 143 5.74e+01 a.174.1.1 77274 1xtnA 120 5.79e+01 2be4A 272 5.91e+01 1ml8A 134 5.95e+01 d.227.1.2 85013 1s72N 187 5.97e+01 c.55.4.1 105333 1qtnA 164 6.04e+01 1pauA c.17.1.1 30999 1l9vA 317 6.15e+01 d.13.2.1,d.216.1.1 73760,73761 1diiC 80 6.27e+01 1diiC a.3.1.1 15925 1r1uA 106 6.32e+01 a.4.5.5 104771 1g99A 408 6.40e+01 1g99A c.55.1.2,c.55.1.2 33457,33458 1qc7A 101 6.47e+01 1qc7A a.118.14.1 18456 1pbwA 216 6.48e+01 1pbwA a.116.1.1 19103 1gk7A 39 6.49e+01 h.1.20.1 70212 1xaoA 121 6.51e+01 2f4qA 346 6.55e+01 1wm3A 72 6.60e+01 1wveC 80 6.61e+01 1m6pA 152 6.62e+01 1m6pA b.64.1.1 27519 2a6cA 83 6.67e+01 2bjcA 62 6.67e+01 2prgC 88 6.85e+01 2prgC j.112.1.1 19644 1s6cA 183 6.87e+01 a.39.1.5 98594 1wviA 257 6.96e+01 1vqoN 187 6.97e+01 1uj8A 77 7.00e+01 1ic8A 194 7.08e+01 a.4.1.1,a.35.1.1 76740,76741 3tmkA 216 7.11e+01 3tmkA c.37.1.1 31920 1bia 321 7.17e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1vf6C 72 7.20e+01 a.194.1.1 100602 1rrzA 86 7.27e+01 a.7.10.1 105086 1hf8A 289 7.29e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 2fm9A 215 7.30e+01 1u61A 138 7.30e+01 a.149.1.1 107696 2eucA 130 7.33e+01 1y9iA 178 7.42e+01 1fnnA 389 7.43e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 2afaA 425 7.47e+01 1khyA 148 7.49e+01 a.174.1.1 77410 1q1hA 110 7.49e+01 a.4.5.41 95580 1xreA 217 7.49e+01 1yurA 98 7.50e+01 1v7nV 163 7.57e+01 a.26.1.2 100476 1y2mA 716 7.58e+01 1jj2M 186 7.65e+01 1ffkK c.55.4.1 63098 1b74A 254 7.70e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 1dik 874 7.73e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1es5A 262 7.89e+01 1skf e.3.1.1 42679 1v2zA 111 8.00e+01 a.186.1.1 108300 1w85A 368 8.08e+01 1tkeA 224 8.13e+01 2audA 257 8.14e+01 1zd0A 150 8.18e+01 1ma3A 253 8.37e+01 c.31.1.5 78883 1cxzB 86 8.38e+01 1cxzB a.2.6.1 15705 1wr7A 41 8.42e+01 1v54I 73 8.45e+01 f.23.3.1 100330 1u55A 188 8.47e+01 d.278.1.1 107677 2occI 73 8.50e+01 2occI f.23.3.1 43523 2bzoB 79 8.62e+01 1z2uA 150 8.62e+01 1zxoA 291 8.65e+01 1f3mA 80 8.66e+01 1f3mA j.66.1.1 46358 1xhvA 257 8.70e+01 c.52.1.19 109597 1dssG 333 8.80e+01 1dssG c.2.1.3,d.81.1.1 30022,39937 1ve4A 206 8.92e+01 1qf6A 642 9.00e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759