CreatePredAlphaCost pred_alpha2k alpha11 T0328.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0328.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0328.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \ phobic_fit 2 \ sidechain 5 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 30 backbone_clashes 2 \ break 100 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 10 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1 #from decoys/try1-opt2.sheets SheetConstraint L19 N27 D109 D101 hbond H20 1 SheetConstraint L19 M25 R139 E133 hbond S21 1 SheetConstraint L24 N29 E133 L128 hbond N27 1 SheetConstraint F59 G66 C108 D101 hbond N60 1 SheetConstraint A64 G66 A300 F298 hbond I65 1 SheetConstraint A87 E90 P96 R93 hbond M88 1 SheetConstraint G177 Q183 P301 G295 hbond S178 1 SheetConstraint Y179 H187 C261 Q253 hbond Y179 1 SheetConstraint Q183 N188 T294 F289 hbond A186 1 SheetConstraint I240 G248 C261 Q253 hbond L241 1 #from decoys/try1-opt2.helices HelixConstraint V32 R37 HelixConstraint Q35 V43 HelixConstraint N42 Y54 HelixConstraint G66 Y74 HelixConstraint Y111 F125 HelixConstraint H160 L166 HelixConstraint N188 R194 HelixConstraint P196 G205 HelixConstraint S223 N229 HelixConstraint P264 V275 HelixConstraint S302 D310