Best Alignments for T0328

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2gvkA/T0328-2gvkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gvkA/T0328-2gvkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5205e-374.68e-137
1t0tV/T0328-1t0tV-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t0tV/T0328-1t0tV-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3823e+001.04e-23 d.58.4.10
1r8gA/T0328-1r8gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1r8gA/T0328-1r8gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9734e+001.46e-11 d.128.1.3
2cb2A/T0328-2cb2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cb2A/T0328-2cb2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.8975e+005.07e-10
1aoeA/T0328-1aoeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1aoeA/T0328-1aoeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5439e+011.00e-12 1aoeA c.71.1.1
1omzA/T0328-1omzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1omzA/T0328-1omzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6352e+011.65e-08 c.68.1.15
1fj2A/T0328-1fj2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fj2A/T0328-1fj2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7213e+012.35e-08 1auoA c.69.1.14
1iq4A/T0328-1iq4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1iq4A/T0328-1iq4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7328e+011.55e-08 1iq4A d.77.1.1
1uc2A/T0328-1uc2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1uc2A/T0328-1uc2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8991e+014.29e-16 d.261.1.1
1nriA/T0328-1nriA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1nriA/T0328-1nriA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9449e+017.45e-10 c.80.1.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001