# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gvkA 317 8.02e-44 1r8gA 372 8.40e-01 d.128.1.3 104845 1b57A 358 1.25e+00 1dosA c.1.10.2 29177 2d0tA 406 3.05e+00 2cdcA 366 3.25e+00 1cxvA 164 3.63e+00 1ck7A d.92.1.11 40404 830cA 168 4.56e+00 1ck7A d.92.1.11 40400 1dosA 358 4.83e+00 1dosA c.1.10.2 29175 1a0hA 159 5.12e+00 1a0hA b.47.1.2,g.14.1.1 26229,44655 1gh6A 114 6.59e+00 a.2.3.1 65191 1f4pA 147 9.64e+00 5nul c.23.5.1 59651 1e79G 272 1.01e+01 1e79G c.49.2.1 33158 1elrA 131 1.23e+01 1a17 a.118.8.1 19209 1jqeA 292 1.54e+01 c.66.1.19 71789 1wr2A 238 1.63e+01 2afwA 329 1.79e+01 1bf5A 545 1.95e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1v64A 108 2.04e+01 a.21.1.1 108392 1et0A 269 2.04e+01 1et0A e.17.1.1 43289 1j7iA 264 2.07e+01 1j7iA d.144.1.6 62694 1ia6A 441 2.16e+01 a.102.1.2 76738 1x3sA 195 2.17e+01 2cb2A 318 2.23e+01 1gl2D 65 2.29e+01 h.1.15.1 65281 1j6uA 469 2.30e+01 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1qr0A 228 2.34e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 2aotA 292 2.46e+01 1mvwB 145 2.66e+01 i.15.1.1 79524 1qo0D 196 2.66e+01 1qo0D c.23.1.3 31125 1k34A 68 2.67e+01 h.3.2.1 68093 2bkkA 264 2.71e+01 1v7oA 165 2.73e+01 d.67.1.2 100480 2fkkA 206 2.74e+01 1v4pA 157 2.83e+01 1akw 147 2.94e+01 5nul c.23.5.1 31153 1tygB 87 2.97e+01 d.15.3.2 107455 1suuA 312 3.00e+01 b.68.10.1 99006 1k1fA 72 3.01e+01 a.147.1.1 68007 1sgvA 316 3.06e+01 b.122.1.1,d.265.1.2 98858,98859 1gggA 226 3.11e+01 1lst c.94.1.1 35817 2d2mD 145 3.15e+01 1eq0A 158 3.22e+01 d.58.30.1 64909 1azl 147 3.26e+01 5nul c.23.5.1 31154 1uf2C 421 3.49e+01 a.115.1.3,b.19.1.1 99291,99292 1gggB 226 3.52e+01 1lst c.94.1.1 35818 1ri5A 298 3.61e+01 c.66.1.34 97502 1kxpD 458 3.69e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1m0wA 491 3.73e+01 c.30.1.4,d.142.1.6 78363,78364 1iqsA 88 3.88e+01 d.214.1.1 71278 1mo0A 275 4.09e+01 c.1.1.1 79329 1i2kA 269 4.12e+01 e.17.1.1 90661 1o75A 415 4.17e+01 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 2bc4A 211 4.31e+01 1aw1A 256 4.39e+01 1amk c.1.1.1 28515 1df4A 68 4.46e+01 1aikN h.3.2.1 45719 1vlpA 441 4.48e+01 d.41.2.2,d.41.2.3 108840,108841 1pov1 302 4.53e+01 1pov1 1um8A 376 4.73e+01 c.37.1.20 99580 1hka 158 4.78e+01 1hka d.58.30.1 39433 1ozbI 27 4.88e+01 g.74.1.1 93817 1t8hA 277 5.06e+01 d.194.1.2 106664 2d4qA 257 5.20e+01 1akr 147 5.22e+01 1rcf c.23.5.1 31152 1iqoA 88 5.22e+01 d.214.1.1 71277 2mysB 166 5.27e+01 1wdcB a.39.1.5 17308 1akt 147 5.28e+01 5nul c.23.5.1 31157 1hi9A 274 5.45e+01 1hi9A c.99.1.1 61063 1ffyA 917 5.81e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1qu2A 917 5.81e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16925,26890,31592 1j9eA 147 5.85e+01 c.23.5.1 62756 1rwsA 77 5.85e+01 d.15.3.2 97991 1xn9A 101 5.92e+01 1vgoA 253 5.96e+01 1iq4A 179 6.07e+01 1iq4A d.77.1.1 62641 1e1hA 287 6.13e+01 d.92.1.7 83167 1h7nA 342 6.41e+01 1b4kA c.1.10.3 60726 1umsA 174 6.51e+01 1hfc d.92.1.11 40368 2pii 112 6.60e+01 2pii d.58.5.1 39071 1aw2A 256 6.72e+01 1amk c.1.1.1 28523 1qr7A 350 6.82e+01 1qr7A c.1.10.4 29191 1sesA 421 6.82e+01 1sesA a.2.7.1,d.104.1.1 15710,40710 1ys4A 354 6.83e+01 1jj2H 167 6.94e+01 1ffkF d.41.4.1 63093 1gg1A 350 7.02e+01 1qr7A c.1.10.4 29187 2cr4A 126 7.08e+01 2fp7A 54 7.13e+01 1ub3A 220 7.16e+01 c.1.10.1 88395 1z6kA 293 7.25e+01 1wn5A 130 7.26e+01 1okhA 46 7.27e+01 g.13.1.1 93253 1pil 112 7.36e+01 2pii d.58.5.1 39072 2b2yA 187 7.47e+01 1uelB 48 7.51e+01 j.105.1.1 99266 1ohlA 342 7.55e+01 c.1.10.3 87035 1m4zA 238 7.56e+01 b.34.12.1 78630 1puzA 82 7.70e+01 a.218.1.1 104320 1hw6A 278 7.73e+01 1frb c.1.7.1 61296 1t3wA 148 7.83e+01 1bp3A 191 7.86e+01 1huw a.26.1.1 16838 2f8lA 344 7.92e+01 2dg5B 190 8.11e+01 1mtzA 293 8.40e+01 c.69.1.7 79467 2fx2 147 8.42e+01 1rcf c.23.5.1 31158 1huqA 164 8.46e+01 1byuA c.37.1.8 32020 1akq 147 8.48e+01 5nul c.23.5.1 31159 1j7lA 264 8.56e+01 d.144.1.6 62697 1n8fA 350 8.95e+01 c.1.10.4 85397