Best Alignments for T0328

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2gvkA/T0328-2gvkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gvkA/T0328-2gvkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2128e-373.43e-133
1r8gA/T0328-1r8gA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1r8gA/T0328-1r8gA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2347e+001.51e-11 d.128.1.3
1t0tV/T0328-1t0tV-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t0tV/T0328-1t0tV-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5629e+002.26e-21 d.58.4.10
2cb2A/T0328-2cb2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cb2A/T0328-2cb2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.6560e+004.97e-08
1zdzA/T0328-1zdzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zdzA/T0328-1zdzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0822e+014.49e-03
1o08A/T0328-1o08A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1o08A/T0328-1o08A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1702e+015.57e-11 c.108.1.6
1iq4A/T0328-1iq4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1iq4A/T0328-1iq4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5581e+014.74e-08 1iq4A d.77.1.1
1omzA/T0328-1omzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1omzA/T0328-1omzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5853e+011.65e-08 c.68.1.15
3gcb/T0328-3gcb-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3gcb/T0328-3gcb-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6485e+011.21e-03 3gcb d.3.1.1
1fj2A/T0328-1fj2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fj2A/T0328-1fj2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6828e+012.35e-08 1auoA c.69.1.14

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001