# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gvkA 317 9.00e-32 1r89A 437 1.07e+00 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1o12A 376 2.32e+00 b.92.1.5,c.1.9.10 80758,80759 1nriA 306 3.13e+00 c.80.1.3 86123 1wu7A 434 3.65e+00 1e7uA 961 4.44e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1rlhA 173 4.66e+00 d.256.1.1 97646 1ys4A 354 4.96e+00 1zdzA 302 5.15e+00 1e8yA 966 5.68e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2cg4A 152 6.06e+00 3gcb 470 6.36e+00 3gcb d.3.1.1 37032 1vimA 200 7.73e+00 c.80.1.3 100758 2b34A 199 8.89e+00 1r8gA 372 9.19e+00 d.128.1.3 104845 1o08A 221 9.55e+00 c.108.1.6 86525 1zvdA 380 9.97e+00 1t0tV 248 1.03e+01 d.58.4.10 106229 1uxtA 501 1.10e+01 c.82.1.1 108125 1m3sA 186 1.13e+01 c.80.1.3 78573 2bklA 695 1.19e+01 1sqiA 393 1.28e+01 d.32.1.3,d.32.1.3 105914,105915 1omzA 293 1.34e+01 c.68.1.15 87093 1kaeA 434 1.37e+01 c.82.1.2 72247 1epuA 591 1.44e+01 1dn1A e.25.1.1 43358 1x9dA 538 1.55e+01 1wu4A 396 1.56e+01 2gn4A 344 1.72e+01 2cmuA 342 1.74e+01 1iq4A 179 1.75e+01 1iq4A d.77.1.1 62641 1e8cA 498 1.79e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1fj2A 232 1.80e+01 1auoA c.69.1.14 34720 1x42A 232 2.00e+01 1wdnA 226 2.18e+01 1lst c.94.1.1 35816 1xkrA 206 2.25e+01 2fnjB 118 2.25e+01 1l1sA 113 2.27e+01 c.114.1.1 73484 1wruA 379 2.29e+01 1j27A 102 2.32e+01 d.58.50.1 90778 1m0wA 491 2.41e+01 c.30.1.4,d.142.1.6 78363,78364 1fm0E 150 2.42e+01 1fmaE d.41.5.1 38629 2a9dA 372 2.43e+01 1mp9A 198 2.46e+01 d.129.1.1,d.129.1.1 91385,91386 2cb2A 318 2.50e+01 1j8uA 325 2.55e+01 d.178.1.1 71611 1fgkA 310 2.57e+01 1fgkA d.144.1.7 41693 1vggA 161 2.58e+01 1x72A 334 2.59e+01 d.126.1.6 109495 1ppjA 446 2.72e+01 d.185.1.1,d.185.1.1 104252,104253 2govA 195 2.89e+01 2bvfA 459 3.16e+01 1w2fA 276 3.25e+01 d.143.1.3 109125 1x1nA 524 3.30e+01 1zcjA 463 3.37e+01 1auoA 218 3.46e+01 1auoA c.69.1.14 34716 1lm8B 118 3.49e+01 d.15.1.1 74033 1wxxA 382 3.52e+01 1uf2A 1019 3.54e+01 e.28.1.2 99289 2c2aA 258 3.66e+01 1q8iA 783 3.76e+01 c.55.3.5,e.8.1.1 96208,96209 1wvqA 167 3.91e+01 2ahuA 531 4.09e+01 1dysA 348 4.17e+01 1bvwA c.6.1.1 30669 1px5A 349 4.17e+01 a.160.1.2,d.218.1.6 95277,95278 1n8fA 350 4.17e+01 c.1.10.4 85397 1jyhA 157 4.23e+01 d.60.1.3 71956 1ki1B 352 4.29e+01 a.87.1.1,b.55.1.1 72497,72498 2bgiA 272 4.33e+01 1f0kA 364 4.36e+01 1f0kA c.87.1.2 35465 1jbwA 428 4.40e+01 c.59.1.2,c.72.2.2 62860,62861 1wz8A 264 4.47e+01 1vi2A 300 4.53e+01 c.2.1.7,c.58.1.5 100726,100727 2gnpA 266 4.54e+01 1v5vA 401 4.57e+01 1chmA 401 4.65e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1j1lA 290 4.65e+01 b.82.1.12 90766 2chnA 716 4.65e+01 1lopA 164 4.68e+01 2cpl b.62.1.1 27510 1cjxA 357 4.68e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1jeoA 180 4.80e+01 c.80.1.3 66611 1euhA 475 4.88e+01 1euhA c.82.1.1 35369 1mp8A 281 4.90e+01 d.144.1.7 91384 1ub3A 220 4.98e+01 c.1.10.1 88395 8dfr 189 5.03e+01 1aoeA c.71.1.1 34895 1uc2A 481 5.06e+01 d.261.1.1 99161 1wosA 364 5.12e+01 b.44.2.1,d.250.1.1 109468,109469 1qwrA 319 5.18e+01 b.82.1.3 96491 1aqcA 172 5.34e+01 1x11A b.55.1.2 26983 1ow1A 195 5.38e+01 b.131.1.3 93625 1ofdA 1520 5.42e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 2fkkA 206 5.49e+01 1vdwA 254 5.61e+01 e.7.1.1 100569 1yirA 408 5.68e+01 1vlbA 907 5.70e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1bvyF 191 5.75e+01 1bvyF c.23.5.1 31207 1q2lA 939 5.77e+01 1kmvA 186 5.77e+01 c.71.1.1 72757 2gfhA 260 5.84e+01 1sc6A 404 5.98e+01 1x7oA 287 5.98e+01 1zj8A 566 6.04e+01 1y8qB 640 6.06e+01 1yvrA 538 6.14e+01 1ofuX 119 6.40e+01 c.37.1.22 86976 2d1eA 248 6.53e+01 1t4hA 290 6.62e+01 d.144.1.7 106420 1moq 368 6.80e+01 1moq c.80.1.1 35302 2fbaA 492 6.86e+01 2bj7A 138 6.92e+01 1vj7A 393 6.97e+01 a.211.1.1,d.218.1.8 100801,100802 1yb2A 275 7.06e+01 1twuA 139 7.07e+01 d.32.1.8 107413 1tz0A 114 7.18e+01 d.58.4.5 107463 1cnzA 363 7.18e+01 1cnzA c.77.1.1 35061 2byoA 207 7.27e+01 1rm6B 324 7.27e+01 1ayx 492 7.32e+01 1ayx a.102.1.1 18825 1p4xA 250 7.39e+01 a.4.5.28,a.4.5.28 87784,87785 2aioA 269 7.50e+01 1xkpC 143 7.53e+01 1pc6A 146 7.57e+01 d.262.1.1 94430 1n7vA 555 7.66e+01 b.126.1.1 85377 1kv7A 488 7.69e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1vliA 385 7.80e+01 b.85.1.1,c.1.10.6 108830,108831 1adt 356 7.92e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1opc 110 7.94e+01 1opc a.4.6.1 16231 1hy7A 173 7.99e+01 d.92.1.11 65957 1jnyA 435 8.04e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1q0pA 223 8.11e+01 c.62.1.1 95507 1wsrA 375 8.24e+01 2aotA 292 8.26e+01 1y7wA 291 8.30e+01 1p1jA 533 8.33e+01 c.2.1.3,d.81.1.3 87687,87688 1d2mA 665 8.42e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1d4xG 126 8.43e+01 1d0nA d.109.1.1 59109 1grj 158 8.47e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1isiA 265 8.51e+01 e.4.1.1 71394 2bcgG 453 8.57e+01 2b1xA 470 8.68e+01 1ohtA 215 8.71e+01 d.118.1.1 87036 1b25A 619 8.74e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1kmqA 184 8.77e+01 c.37.1.8 84412 1r88A 280 8.83e+01 c.69.1.3 97219 1ei5A 520 8.84e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1sfe 180 8.94e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1i1qA 520 8.98e+01 1qdlA d.161.1.1 61543