# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gvkA 317 1.78e-40 3gcb 470 7.80e-01 3gcb d.3.1.1 37032 1gcb 454 1.12e+00 3gcb d.3.1.1 37034 2cb2A 318 1.25e+00 1zvdA 380 1.35e+00 1q2lA 939 1.91e+00 1omzA 293 3.42e+00 c.68.1.15 87093 1r8gA 372 3.47e+00 d.128.1.3 104845 1o08A 221 3.85e+00 c.108.1.6 86525 1iq4A 179 4.64e+00 1iq4A d.77.1.1 62641 1wbsA 360 4.97e+00 1aqcA 172 7.51e+00 1x11A b.55.1.2 26983 1ofdA 1520 7.71e+00 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1lcyA 325 7.90e+00 b.36.1.4,b.47.1.1 73834,73835 1t0tV 248 8.11e+00 d.58.4.10 106229 1rlhA 173 8.62e+00 d.256.1.1 97646 1o12A 376 1.06e+01 b.92.1.5,c.1.9.10 80758,80759 1jyhA 157 1.07e+01 d.60.1.3 71956 1fj2A 232 1.07e+01 1auoA c.69.1.14 34720 1ireA 204 1.24e+01 d.149.1.1 76769 1p35A 299 1.29e+01 1p35A b.28.1.1 23925 1ugpA 203 1.34e+01 d.149.1.1 107831 1e8yA 966 1.36e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2gfsA 372 1.37e+01 1jpzA 473 1.37e+01 a.104.1.1 67069 1wu7A 434 1.38e+01 1zdzA 302 1.40e+01 1bia 321 1.61e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1oaoC 729 1.65e+01 e.26.1.3 86746 1fmjA 351 1.66e+01 c.37.1.5 59879 1zz2A 360 1.67e+01 1q4gA 553 1.68e+01 a.93.1.2,g.3.11.1 95789,95790 1q9jA 422 1.70e+01 c.43.1.2,c.43.1.2 104590,104591 1o97D 320 1.78e+01 c.26.2.3,c.31.1.2 81233,81234 2bklA 695 1.79e+01 1svdA 473 1.81e+01 1wosA 364 1.94e+01 b.44.2.1,d.250.1.1 109468,109469 1jg1A 235 1.96e+01 c.66.1.7 66661 2ckiA 262 2.20e+01 1u67A 600 2.22e+01 a.93.1.2,g.3.11.1 107697,107698 2aalA 131 2.39e+01 2gnpA 266 2.40e+01 1mqsA 671 2.59e+01 e.25.1.1 79414 1jb0A 755 2.63e+01 1jb0A f.29.1.1 62820 1j58A 385 2.63e+01 b.82.1.2 71531 1r3cA 366 2.66e+01 d.144.1.7 96906 1nnhA 294 2.66e+01 d.104.1.1 92005 1efdN 266 2.71e+01 1efdN c.92.2.1 35597 1hlrA 907 2.79e+01 1c4oA 664 2.80e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1vlbA 907 2.84e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 2fnjB 118 2.84e+01 1izoA 417 3.18e+01 a.104.1.1 83851 1j27A 102 3.20e+01 d.58.50.1 90778 1kv7A 488 3.28e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 2cxnA 557 3.30e+01 1nbwA 607 3.32e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 2govA 195 3.33e+01 1uxtA 501 3.41e+01 c.82.1.1 108125 1o7qA 289 3.53e+01 c.68.1.9 92626 1c0pA 363 3.53e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1vf8A 377 3.57e+01 2fflA 756 3.65e+01 1ss9A 311 3.69e+01 c.68.1.4 105978 1zjcA 418 3.71e+01 1a8y 367 3.71e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1wxxA 382 3.79e+01 1yghA 164 3.85e+01 1yghA d.108.1.1 40802 1l1sA 113 3.95e+01 c.114.1.1 73484 2d0oA 610 4.06e+01 1aoeA 192 4.07e+01 1aoeA c.71.1.1 34923 1q0pA 223 4.07e+01 c.62.1.1 95507 2gn4A 344 4.11e+01 1uxy 340 4.21e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1ga8A 311 4.28e+01 1ga8A c.68.1.4 34516 1dysA 348 4.32e+01 1bvwA c.6.1.1 30669 1us5A 314 4.32e+01 c.94.1.1 99856 1px5A 349 4.41e+01 a.160.1.2,d.218.1.6 95277,95278 1qd1A 325 4.43e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1wruA 379 4.60e+01 1bu7A 455 4.66e+01 1bu7A a.104.1.1 18937 1fjgI 128 4.68e+01 1fjfI d.14.1.1 37559 1fm0E 150 4.68e+01 1fmaE d.41.5.1 38629 1xygD 359 4.76e+01 1wbpA 397 4.80e+01 1chmA 401 4.81e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1iatA 557 4.83e+01 1dqrA c.80.1.2 62123 1vj7A 393 4.90e+01 a.211.1.1,d.218.1.8 100801,100802 1e9lA 377 4.92e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 8dfr 189 4.99e+01 1aoeA c.71.1.1 34895 1eu8A 409 5.02e+01 1eu8A c.94.1.1 59502 1vrmA 325 5.02e+01 1d2mA 665 5.04e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1vdwA 254 5.04e+01 e.7.1.1 100569 1moq 368 5.10e+01 1moq c.80.1.1 35302 1zhxA 438 5.12e+01 1kaeA 434 5.16e+01 c.82.1.2 72247 1czaN 917 5.16e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1xkrA 206 5.22e+01 1vqwA 457 5.27e+01 1esmA 316 5.35e+01 1esmA c.37.1.6 31953 1lm8B 118 5.37e+01 d.15.1.1 74033 1wu4A 396 5.53e+01 1ywrA 360 5.54e+01 1yueA 427 5.58e+01 1uc2A 481 5.59e+01 d.261.1.1 99161 1ihp 438 5.65e+01 1ihp c.60.1.2 33993 1t3cA 421 5.69e+01 d.92.1.7 106343 1jqeA 292 5.76e+01 c.66.1.19 71789 1sq5A 308 5.78e+01 c.37.1.6 105882 2fdrA 229 5.89e+01 1t4hA 290 5.98e+01 d.144.1.7 106420 1u0tA 307 6.19e+01 e.52.1.1 107567 1rq2A 382 6.24e+01 c.32.1.1,d.79.2.1 105048,105049 1ntyA 311 6.25e+01 a.87.1.1,b.55.1.1 103873,103874 1t1dA 100 6.49e+01 1t1dA d.42.1.2 38637 1tx4B 178 6.51e+01 1ctqA c.37.1.8 32045 1ti6A 875 6.54e+01 b.52.2.2,c.81.1.1 106974,106975 2gfhA 260 6.57e+01 1uarA 285 6.70e+01 c.46.1.2,c.46.1.2 107762,107763 1fo8A 343 6.70e+01 1foaA c.68.1.10 59927 1k1xA 659 6.80e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1kmvA 186 7.13e+01 c.71.1.1 72757 1jj2H 167 7.23e+01 1ffkF d.41.4.1 63093 1zq1C 633 7.37e+01 1zzlA 351 7.47e+01 2ghrA 302 7.50e+01 1bd3A 243 7.53e+01 1bd3A c.61.1.1 34098 1e2kA 331 7.56e+01 1qhiA c.37.1.1 31854 1pch 88 7.58e+01 1ptf d.94.1.1 40564 1q8dA 108 7.64e+01 a.228.1.1 104554 2aotA 292 7.97e+01 2ab0A 205 7.98e+01 1tz0A 114 8.01e+01 d.58.4.5 107463 1hc7A 477 8.02e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1a68 95 8.07e+01 1t1dA d.42.1.2 38639 1a6q 382 8.14e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 2fkkA 206 8.17e+01 1d8cA 723 8.30e+01 1d8cA c.1.13.1 29325 1rwzA 245 8.32e+01 d.131.1.2,d.131.1.2 98005,98006 1p7tA 731 8.37e+01 c.1.13.1 94319 1vddA 228 8.41e+01 e.49.1.1 108519 2d09A 407 8.41e+01 1grj 158 8.42e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1kqfA 1015 8.53e+01 b.52.2.2,c.81.1.1 72871,72872 2d1pB 119 8.64e+01 1u04A 771 8.92e+01 b.34.14.1,c.55.3.10 107539,107540 1ewqA 765 8.95e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743