# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gvkA 317 6.25e-36 1o12A 376 2.92e+00 b.92.1.5,c.1.9.10 80758,80759 1ys4A 354 3.41e+00 1zdzA 302 4.40e+00 1rlhA 173 4.76e+00 d.256.1.1 97646 1zvdA 380 4.85e+00 1sqiA 393 5.64e+00 d.32.1.3,d.32.1.3 105914,105915 2b34A 199 5.95e+00 1nriA 306 6.03e+00 c.80.1.3 86123 1e7uA 961 6.49e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 3gcb 470 6.88e+00 3gcb d.3.1.1 37032 2cg4A 152 7.85e+00 1uf2A 1019 8.26e+00 e.28.1.2 99289 1vimA 200 8.42e+00 c.80.1.3 100758 1t0tV 248 9.10e+00 d.58.4.10 106229 1r8gA 372 9.21e+00 d.128.1.3 104845 1gcb 454 9.64e+00 3gcb d.3.1.1 37034 1a8y 367 1.01e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1o08A 221 1.06e+01 c.108.1.6 86525 1jyhA 157 1.31e+01 d.60.1.3 71956 1jeoA 180 1.43e+01 c.80.1.3 66611 1xkrA 206 1.48e+01 1kaeA 434 1.54e+01 c.82.1.2 72247 2bklA 695 1.60e+01 2a9dA 372 1.82e+01 1hr6B 443 1.96e+01 1be3A d.185.1.1,d.185.1.1 61166,61167 1ru3A 732 1.96e+01 e.26.1.3 97835 2pia 321 2.02e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1aoeA 192 2.03e+01 1aoeA c.71.1.1 34923 1gggA 226 2.05e+01 1lst c.94.1.1 35817 1uxtA 501 2.12e+01 c.82.1.1 108125 1jj2H 167 2.12e+01 1ffkF d.41.4.1 63093 1l1sA 113 2.15e+01 c.114.1.1 73484 1wu7A 434 2.18e+01 1omzA 293 2.31e+01 c.68.1.15 87093 1s6yA 450 2.33e+01 c.2.1.5,d.162.1.2 105314,105315 1wxxA 382 2.37e+01 1n7vA 555 2.44e+01 b.126.1.1 85377 1uc2A 481 2.56e+01 d.261.1.1 99161 1yfsA 465 2.58e+01 1gkzA 388 3.17e+01 a.29.5.1,d.122.1.4 65268,65269 1y8aA 332 3.28e+01 1riqA 465 3.34e+01 a.203.1.1,d.104.1.1 97516,97517 1ofdA 1520 3.38e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1wdnA 226 3.40e+01 1lst c.94.1.1 35816 1j27A 102 3.56e+01 d.58.50.1 90778 1e8yA 966 3.60e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1fo8A 343 3.61e+01 1foaA c.68.1.10 59927 2fnjB 118 3.64e+01 1m0wA 491 3.70e+01 c.30.1.4,d.142.1.6 78363,78364 1wruA 379 3.75e+01 1fj2A 232 3.81e+01 1auoA c.69.1.14 34720 1czaN 917 3.86e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1yghA 164 4.28e+01 1yghA d.108.1.1 40802 1jfrA 262 4.35e+01 1jfrA c.69.1.16 34724 1vliA 385 4.42e+01 b.85.1.1,c.1.10.6 108830,108831 1yirA 408 4.48e+01 1mp8A 281 4.68e+01 d.144.1.7 91384 1hlrA 907 4.74e+01 1nktA 922 4.74e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 1g99A 408 4.81e+01 1g99A c.55.1.2,c.55.1.2 33457,33458 1vlbA 907 4.82e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1tz0A 114 4.86e+01 d.58.4.5 107463 1aqcA 172 4.95e+01 1x11A b.55.1.2 26983 1p9aG 290 4.95e+01 c.10.2.7 87990 1vi2A 300 4.96e+01 c.2.1.7,c.58.1.5 100726,100727 1cjxA 357 5.02e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1souA 194 5.23e+01 c.124.1.6 105858 1lcyA 325 5.24e+01 b.36.1.4,b.47.1.1 73834,73835 1lm8B 118 5.30e+01 d.15.1.1 74033 1q2lA 939 5.30e+01 4pah 308 5.48e+01 4pah d.178.1.1 42576 1fm0E 150 5.50e+01 1fmaE d.41.5.1 38629 1vggA 161 5.61e+01 2f8lA 344 5.68e+01 1zq1C 633 5.72e+01 1grj 158 5.72e+01 1grj a.2.1.1,d.26.1.2 15691,38433 2d1eA 248 5.86e+01 1mg4A 113 6.09e+01 d.15.11.1 84953 1xv5A 401 6.15e+01 1x42A 232 6.18e+01 2cb2A 318 6.19e+01 2aalA 131 6.21e+01 1p35A 299 6.26e+01 1p35A b.28.1.1 23925 1zcjA 463 6.40e+01 1iq4A 179 6.41e+01 1iq4A d.77.1.1 62641 1jb0A 755 6.42e+01 1jb0A f.29.1.1 62820 2aotA 292 6.47e+01 2aioA 269 6.48e+01 1v5vA 401 6.54e+01 1p4cA 380 6.55e+01 c.1.4.1 94100 1k6xA 352 6.55e+01 c.2.1.2 68238 1q0pA 223 6.60e+01 c.62.1.1 95507 1chmA 401 6.70e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1xgkA 352 6.71e+01 1vcbA 118 6.74e+01 1vcbA d.15.1.1 37603 1smlA 269 6.74e+01 1smlA d.157.1.1 42053 2gnpA 266 6.76e+01 1mp9A 198 6.76e+01 d.129.1.1,d.129.1.1 91385,91386 1jayA 212 6.85e+01 c.2.1.6 66478 1ow1A 195 6.91e+01 b.131.1.3 93625 1m3sA 186 6.93e+01 c.80.1.3 78573 1rm6B 324 6.97e+01 1fgkA 310 7.02e+01 1fgkA d.144.1.7 41693 1jqeA 292 7.10e+01 c.66.1.19 71789 1soxA 466 7.13e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 1x7oA 287 7.16e+01 1xygD 359 7.16e+01 1dqsA 393 7.16e+01 1dqsA e.22.1.1 43347 1px5A 349 7.22e+01 a.160.1.2,d.218.1.6 95277,95278 2bylA 439 7.51e+01 1tf4A 605 7.58e+01 1tf4A a.102.1.2,b.2.2.2 18827,22393 1wvqA 167 7.73e+01 2db3A 434 7.76e+01 1wi1A 126 7.95e+01 2c3mA 1231 8.05e+01 1ppjB 439 8.19e+01 d.185.1.1,d.185.1.1 104254,104255 1ub3A 220 8.24e+01 c.1.10.1 88395 1j8uA 325 8.25e+01 d.178.1.1 71611 2ab0A 205 8.28e+01 2gfhA 260 8.32e+01 1ugpA 203 8.35e+01 d.149.1.1 107831 1ki1B 352 8.36e+01 a.87.1.1,b.55.1.1 72497,72498 2f86B 143 8.39e+01 1yvrA 538 8.41e+01 1oq9A 363 8.51e+01 a.25.1.2 87257 1xjjA 644 8.52e+01 1vdwA 254 8.54e+01 e.7.1.1 100569 1dysA 348 8.55e+01 1bvwA c.6.1.1 30669 1l0lB 439 8.64e+01 d.185.1.1,d.185.1.1 84484,84485 1ireA 204 8.68e+01 d.149.1.1 76769 1r9jA 673 8.72e+01 1ss9A 311 8.82e+01 c.68.1.4 105978 1esmA 316 8.85e+01 1esmA c.37.1.6 31953 1f0kA 364 8.91e+01 1f0kA c.87.1.2 35465 1p4xA 250 8.94e+01 a.4.5.28,a.4.5.28 87784,87785