(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0327 SR346, Bacillus subtlis, 102 res
              10        20        30        40           50            
              |         |         |         |            |            
   1 MNKDKLRYAILKEIFEGNTPLSENDIGVTEDQFDDAVNFLKREGYIIGV...HYS....DDR...
   2 KILSYLKYCYEEGQNPDLDILDAPTFKISNNQFYKTLMMLMDDGYIKGL...KFT....PTKtgt
   3 KILLYLKYCYENGIEVDPDILSSENIGISEKQFVLTLQMLLEDGYIKGV...SLKptiqGPT...
   4 KILAYLYHAMKKGEKIDPGVFDPQNYRVSYPYLNDILEELKENGYIKGV...SFIetk.DGK...
   5 -------------------------------------------------...---....---...
   6 QILKAIDVAFENQDFNYETTLDLKKLKISKHRLELFIEELVDKNYIKGLtvrHSI....NGN...
   7 ---------------------------------SKALCYLQDEGFV---...SIY....EAD...


         60        70        80        90       100       110       120
         |         |         |         |         |         |         |
   1 PHLYKLGPELTEKGENYLKENGTWSKAYKTIKEIKDWIKLEHHHHHHMNKDKLRYAILKEIFEGN
   2 IVSNMDRVYITSDGLQYLEENTMMKKAYKIFKEVRDWLPL-------------------------
   3 IICNIQDTYATSSGLQYLIENSMMHKAYKVSKEVRDWIPL-------------------------
   4 LITGLSDIKITIKGIEYLDDNSMMKKAYKTLKELKDWIP--------------------------
   5 ------------------------------------------------NKDKLRYAILKEIFEGN
   6 PIISIGNPRLTLDGLDFLENNSSMKKAYKFLKEAKEWIP--------------------------
   7 SIAYM--TTLLSAGIAYCEENTLLKKGYKAAKEIKSWMP--------------------------


             130       140       150       160       170       180     
              |         |         |         |         |         |     
   1 TPLSENDIGVTEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKENGTWSKAY
   2 -----------------------------------------------------------------
   3 -----------------------------------------------------------------
   4 -----------------------------------------------------------------
   5 TPLSENDIGVTEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKENGTWSKAY
   6 -----------------------------------------------------------------
   7 -----------------------------------------------------------------


        190       200    
         |         |    
   1 KTIKEIKDWIKLEHHHHHH
   2 -------------------
   3 -------------------
   4 -------------------
   5 KTIKEIKDWI---------
   6 -------------------
   7 -------------------