a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0327 SR346, Bacillus subtlis, 102 res
- gi|2633549|emb|CAB13052.1|_1:94 yjcQ [Bacillus subtilis subsp. subtilis str. 168]
- gi|16078260|ref|NP_389077.1| hypothetical protein BSU11950 [Bacillus subtilis subsp. subtilis str. 168]

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MNKDKLRYAILKEIFEGNTPLSENDIGVTEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPEL
   2 MNKDKLRYAILKEIFEGNTPLSENDIGVTEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPEL


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 TEKGENYLKENGTWSKAYKTIKEIKDWIKLEHHHHHHMNKDKLRYAILKEIFEGNTPLSENDIGV
   2 TEKGENYLKENGTWSKAYKTIKEIKDWIK------------------------------------


             140       150       160       170       180       190     
              |         |         |         |         |         |     
   1 TEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKENGTWSKAYKTIKEIKDWI
   2 -----------------------------------------------------------------


        200    
         |    
   1 KLEHHHHHH
   2 ---------