# List of top-scoring protein chains for T0327.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rsgA 516 2.20e-01 1v30A 124 3.87e-01 2c71A 216 5.50e-01 1tbxA 99 6.05e-01 a.4.5.48 106748 1fb5A 320 6.29e-01 c.78.1.1,c.78.1.1 90492,90493 1othA 321 7.03e-01 1othA c.78.1.1,c.78.1.1 35260,35261 1a8h 500 1.40e+00 1a8h a.27.1.1,c.26.1.1 16922,31589 1woyA 500 1.47e+00 1am7A 158 1.56e+00 1am7A d.2.1.4 36981 1d9uA 154 1.68e+00 1am7A d.2.1.4 59111 1pe0A 197 1.89e+00 c.23.16.2 88045 1ln4A 104 2.19e+00 d.68.4.1 74043 1yyvA 131 2.32e+00 1yfkA 262 2.34e+00 1wa3A 205 2.56e+00 1yvvA 336 2.91e+00 2ewoA 377 3.81e+00 1p5tA 127 3.96e+00 b.55.1.2 94148 1pdvA 197 5.06e+00 c.23.16.2 88036 2dfkA 402 5.69e+00 1jmaA 290 5.87e+00 b.1.1.1 63177 1rqgA 722 6.16e+00 a.27.1.1,c.26.1.1,g.41.1.1 105063,105064,105065 2ganA 190 6.93e+00 1t8pA 267 7.30e+00 c.60.1.1 106667 1whaA 105 7.67e+00 1sxrA 183 7.73e+00 d.118.1.1 106101 1s2jA 209 7.97e+00 d.118.1.1 105227 2c3aA 286 8.44e+00 2c36A 285 8.52e+00 1ndaA 491 8.52e+00 3grs c.3.1.5,c.3.1.5,d.87.1.1 30525,30526,40194 1rxwA 336 8.94e+00 a.60.7.1,c.120.1.2 98059,98060 1l2gA 287 9.00e+00 b.1.1.1 91048 1zhvA 134 9.88e+00 1bouB 302 1.02e+01 1bouB c.56.6.1 33859 1ypxA 375 1.03e+01 1pls 113 1.08e+01 1pls b.55.1.1 26965 2afpA 129 1.08e+01 2afpA d.169.1.1 42349 1n91A 108 1.11e+01 d.206.1.1 80326 1xsqA 168 1.18e+01 1xsrA 168 1.22e+01 2f0aA 98 1.23e+01 1vlwA 217 1.23e+01 c.1.10.1 108868 2ffgA 87 1.24e+01 2azqA 311 1.25e+01 1czj 111 1.31e+01 3cyr a.138.1.1 19663 2a2fX 325 1.32e+01 1j42A 189 1.34e+01 c.23.16.2 90837 1ysgA 181 1.47e+01 1meoA 209 1.50e+01 c.65.1.1 79035 2fswA 107 1.51e+01 1hl9A 449 1.54e+01 b.71.1.3,c.1.8.11 90650,90651 1fbaA 361 1.56e+01 1fbaA c.1.10.1 29120 1maz 221 1.57e+01 1maz f.1.4.1 43393 1y6dA 120 1.58e+01 1p5fA 189 1.61e+01 c.23.16.2 94142 1gs0A 351 1.62e+01 a.41.1.1,d.166.1.2 76323,76324 2g0uA 92 1.63e+01 2cazB 155 1.64e+01 1qqfA 277 1.72e+01 1c3d a.102.4.4 18875 1xx4A 261 1.75e+01 1qxfA 66 1.83e+01 g.41.8.4 96527 1b35C 282 1.88e+01 1b35C 2b2nA 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