# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rxwA 336 7.43e-03 a.60.7.1,c.120.1.2 98059,98060 1tbxA 99 1.45e-02 a.4.5.48 106748 2fswA 107 3.85e-02 2a61A 145 8.41e-02 1ub9A 100 1.92e-01 a.4.5.28 99159 2dfkA 402 1.96e-01 2fbiA 142 1.97e-01 1q6hA 224 3.59e-01 d.26.1.1 95975 1zhvA 134 3.61e-01 1z7uA 112 4.33e-01 2f2eA 146 4.54e-01 1io2A 213 5.22e-01 1ekeA c.55.3.1 62612 2axpA 173 5.53e-01 1q6uA 245 5.99e-01 d.26.1.1 95998 1v30A 124 6.44e-01 1ltqA 301 8.89e-01 c.108.1.9,c.37.1.1 78208,78209 1stzA 338 9.69e-01 a.4.5.51,d.110.2.3 106009,106010 1p4xA 250 1.01e+00 a.4.5.28,a.4.5.28 87784,87785 2co5A 99 1.03e+00 1othA 321 1.29e+00 1othA c.78.1.1,c.78.1.1 35260,35261 2g0uA 92 1.36e+00 1bouB 302 1.52e+00 1bouB c.56.6.1 33859 2ethA 154 1.56e+00 1yemA 179 1.66e+00 1fecA 490 1.95e+00 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2ah6A 208 2.06e+00 1qysA 106 2.13e+00 k.41.1.1 96603 2fbhA 146 2.15e+00 1x79B 112 2.30e+00 2b0lA 102 2.33e+00 1n91A 108 2.40e+00 d.206.1.1 80326 1ly1A 181 2.43e+00 c.37.1.1 74334 1chmA 401 2.46e+00 1chmA c.55.2.1,d.127.1.1 33545,41142 1zin 217 2.85e+00 1zin c.37.1.1,g.41.2.1 31915,45178 2fj6A 82 2.97e+00 1wa3A 205 3.24e+00 2g7uA 257 3.33e+00 1z1dA 103 3.42e+00 1h99A 224 3.47e+00 a.142.1.1,a.142.1.1 60814,60815 8rucI 123 3.49e+00 1rboC d.73.1.1 39629 1okiA 210 3.51e+00 b.11.1.1,b.11.1.1 93255,93256 2ah5A 210 3.91e+00 2bbhA 269 4.23e+00 1r7jA 95 4.74e+00 a.4.5.49 104836 2trxA 108 4.93e+00 1thx c.47.1.1 32719 1avyA 74 4.94e+00 1avyB h.1.17.1 45656 1ytaA 180 5.06e+00 1m70A 190 5.12e+00 a.3.1.4,a.3.1.4 91200,91201 1mkmA 249 5.15e+00 a.4.5.33,d.110.2.2 79242,79243 1hw1A 239 5.18e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 2baa 243 5.25e+00 1cnsA d.2.1.1 36243 2a6cA 83 5.85e+00 1gk8I 140 6.15e+00 d.73.1.1 65242 1zh5A 195 6.17e+00 2es4D 332 6.19e+00 1rsgA 516 6.27e+00 1iyhA 198 6.58e+00 a.45.1.1,c.47.1.5 83790,83791 1o97C 264 7.04e+00 c.26.2.3 81232 1qqfA 277 7.13e+00 1c3d a.102.4.4 18875 2cg4A 152 7.35e+00 1orjA 130 7.39e+00 a.24.19.1 93456 1q5xA 161 7.41e+00 c.8.7.1 95947 1r3eA 309 8.16e+00 b.122.1.1,d.265.1.2 96907,96908 1dbxA 158 8.16e+00 1dbuA d.116.1.1 40928 2dbbA 151 8.80e+00 2db0A 253 8.88e+00 1ir21 140 8.90e+00 1yovA 537 9.08e+00 1v60A 123 9.10e+00 2cvdA 198 9.31e+00 1gnkA 112 9.32e+00 2pii d.58.5.1 39073 1qavA 90 9.33e+00 1qauA b.36.1.1 24777 1vljA 407 9.87e+00 e.22.1.2 108832 1n81A 186 9.89e+00 a.185.1.1 85388 1gwmA 153 9.99e+00 b.18.1.19 83348 1v1hA 103 1.00e+01 b.83.1.1,h.1.17.1 108243,108244 1pytA 94 1.04e+01 1pytA d.58.3.1 39064 2c8vA 288 1.08e+01 1sxrA 183 1.08e+01 d.118.1.1 106101 1w0hA 204 1.08e+01 1m1hA 248 1.09e+01 b.114.1.1,d.58.42.1 78415,78416 2au5A 139 1.09e+01 1vqsA 116 1.09e+01 2b5eA 504 1.10e+01 1ispA 181 1.14e+01 c.69.1.18 76778 2cujA 108 1.15e+01 1aky 221 1.15e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1qsdA 106 1.18e+01 1qsdA a.7.5.1 16335 1dpgA 485 1.22e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 2e2aA 105 1.25e+01 a.7.2.1 88499 1wy1A 172 1.26e+01 1q59A 172 1.34e+01 f.1.4.1 95881 1vaxA 287 1.34e+01 1b35C 282 1.39e+01 1b35C 1vqoD 177 1.45e+01 1zkkA 167 1.47e+01 1b9mA 265 1.53e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1cex 214 1.55e+01 1cex c.69.1.30 31285 2cjpA 328 1.58e+01 2gxfA 142 1.59e+01 1a0p 290 1.62e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1lvfA 110 1.62e+01 a.47.2.1 74280 1z0pA 84 1.62e+01 2asfA 137 1.70e+01 1d9uA 154 1.71e+01 1am7A d.2.1.4 59111 1uz5A 402 1.72e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1eejA 216 1.73e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1woyA 500 1.76e+01 1g8iA 190 1.81e+01 1rec a.39.1.5 60363 1oltA 457 1.86e+01 c.1.28.2 93334 1mxmA 254 1.87e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1wmaA 276 1.87e+01 1qc7A 101 1.89e+01 1qc7A a.118.14.1 18456 1faoA 126 1.91e+01 1faoA b.55.1.1 26974 1mzgA 146 1.92e+01 d.224.1.1 79696 1q67A 231 1.95e+01 b.55.1.7 95960 2fb5A 205 2.04e+01 1vcvA 226 2.07e+01 1lvaA 258 2.07e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1pprM 312 2.18e+01 1pprM a.131.1.1,a.131.1.1 19502,19503 1fzqA 181 2.26e+01 1hurA c.37.1.8 32060 1wdnA 226 2.27e+01 1lst c.94.1.1 35816 1hqkA 154 2.28e+01 c.16.1.1 65902 1ee8A 266 2.29e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2f06A 144 2.29e+01 2agaA 190 2.34e+01 2exrA 524 2.35e+01 1ko6A 187 2.41e+01 b.119.1.1 77471 1vlyA 338 2.43e+01 b.44.2.1,d.250.1.1 108871,108872 1gkpA 458 2.43e+01 b.92.1.3,c.1.9.6 70231,70232 1n1jB 97 2.44e+01 a.22.1.3 79814 1vhcA 224 2.44e+01 c.1.10.1 100661 1yhlA 362 2.45e+01 1dv1A 449 2.53e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2f9dA 125 2.63e+01 1wj5A 120 2.64e+01 1u6pA 56 2.65e+01 1xd8A 289 2.78e+01 1vbuA 328 2.81e+01 1e7wA 291 2.94e+01 c.2.1.2 59373 2bl0B 145 3.02e+01 1ogiA 303 3.05e+01 b.43.4.2,c.25.1.1 92914,92915 1kqpA 271 3.11e+01 c.26.2.1 72883 1j6qA 136 3.12e+01 b.40.9.1 77091 1ug3A 339 3.13e+01 2b9eA 303 3.15e+01 1y93A 159 3.15e+01 1k78A 149 3.16e+01 a.4.1.5,a.4.1.5 68255,68256 1ja9A 274 3.21e+01 c.2.1.2 62817 1zy9A 564 3.22e+01 1wmiA 90 3.36e+01 1e85A 127 3.36e+01 1bbhA a.24.3.2 16549 2fkiA 126 3.37e+01 1x79A 98 3.37e+01 2d9iA 96 3.39e+01 1efdN 266 3.43e+01 1efdN c.92.2.1 35597 3thiA 371 3.47e+01 2thiA c.94.1.1 35792 2f0aA 98 3.47e+01 1j6rA 214 3.50e+01 d.173.1.2 71598 1h6pA 203 3.51e+01 a.146.1.1 60690 1sx5A 244 3.53e+01 c.52.1.2 99023 1b0nA 111 3.58e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1z15A 344 3.58e+01 1h1yA 228 3.58e+01 c.1.2.2 76506 1ny1A 240 3.58e+01 c.6.2.3 86395 2h17A 181 3.60e+01 1lj9A 144 3.61e+01 a.4.5.28 78035 1k61A 60 3.67e+01 a.4.1.1 77270 1gdvA 85 3.67e+01 1ctj a.3.1.1 60458 2a2pA 129 3.70e+01 1yqbA 100 3.73e+01 1z5yE 149 3.74e+01 1r45A 204 3.75e+01 1gvnB 287 3.80e+01 c.37.1.21 76354 1zj6A 187 3.85e+01 2b5iB 214 3.86e+01 1tmxA 293 3.87e+01 1ws0A 156 3.93e+01 2as9A 210 3.94e+01 2aamA 309 3.97e+01 1v5iB 76 3.97e+01 2azeA 155 3.98e+01 1ddf 127 4.04e+01 1ddf a.77.1.2 18423 1seiA 130 4.04e+01 1seiA d.140.1.1 41463 1yj7A 171 4.05e+01 1z8uA 102 4.07e+01 1dlwA 116 4.09e+01 1dlyA a.1.1.1 14982 1nr4A 71 4.25e+01 d.9.1.1 92077 1ef1C 90 4.27e+01 1ef1C a.137.5.1 19642 1u6tA 121 4.29e+01 2gu3A 136 4.39e+01 1dofA 403 4.40e+01 1c3cA a.127.1.1 19429 1hulA 108 4.46e+01 1hulA a.26.1.2 16865 1i6pA 220 4.46e+01 1ddzA c.53.2.1 61848 1zzpA 130 4.46e+01 1ouwA 152 4.54e+01 b.77.3.1 93571 1bg4 302 4.57e+01 1taxA c.1.8.3 28806 1pa1A 310 4.60e+01 c.45.1.2 94404 1jf8A 131 4.61e+01 c.44.1.1 66621 2jdxA 385 4.62e+01 1jdw d.126.1.2 41139 1cpt 412 4.62e+01 1cpt a.104.1.1 18968 1hl9A 449 4.68e+01 b.71.1.3,c.1.8.11 90650,90651 2cdpA 160 4.69e+01 1ztsA 139 4.69e+01 1q7zA 566 4.70e+01 c.1.21.2,c.1.26.1 96090,96091 2ez9A 603 4.71e+01 2a72A 146 4.71e+01 1yy7A 213 4.72e+01 1wt4A 73 4.74e+01 2c71A 216 4.74e+01 1jflA 228 4.75e+01 c.78.2.1,c.78.2.1 71656,71657 2f71A 298 4.79e+01 1wy5A 317 4.80e+01 1hh1A 143 4.83e+01 1gefA c.52.1.18 61036 2fug5 207 4.85e+01 1vr0A 247 4.86e+01 2etjA 250 4.91e+01 1vk9A 151 4.94e+01 c.139.1.1 108640 1xedA 117 5.01e+01 2ghpA 292 5.05e+01 1xsqA 168 5.08e+01 1hr6A 475 5.13e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1rypD 241 5.18e+01 1rypD d.153.1.4 41935 1u7bA 261 5.29e+01 1kmiZ 214 5.30e+01 h.4.11.1 72752 1m55A 197 5.34e+01 d.89.1.3 74469 1wwiA 148 5.38e+01 1kjqA 391 5.38e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1jatB 138 5.38e+01 1jatB d.20.1.1 62819 1unkA 87 5.43e+01 1cei a.28.2.1 16935 1rmwA 212 5.48e+01 1jyhA 157 5.50e+01 d.60.1.3 71956 1ylqA 96 5.57e+01 1gefA 123 5.62e+01 1gefA c.52.1.18 60465 1eluA 390 5.66e+01 1elqA c.67.1.3 34434 1uhkA 191 5.74e+01 1btkA 169 5.80e+01 1btkA b.55.1.1 26959 1z7xW 461 5.85e+01 2h0bA 184 5.87e+01 2ddrA 306 5.90e+01 1u2wA 122 5.92e+01 1m1eB 81 5.95e+01 a.161.1.1 78400 1tkeA 224 6.06e+01 2an9A 207 6.09e+01 1ob8A 135 6.10e+01 1q92A 197 6.11e+01 c.108.1.8 96250 2fs3A 282 6.13e+01 1kl9A 182 6.22e+01 b.40.4.5 72681 2erfA 209 6.22e+01 2cohA 202 6.23e+01 1kcfA 258 6.25e+01 a.140.2.1,c.55.3.7 68434,68435 1dvoA 152 6.27e+01 1dvoA a.136.1.1 19623 1s3cA 141 6.38e+01 1lddA 74 6.41e+01 a.4.5.34 73841 2b82A 211 6.45e+01 2fiyA 309 6.50e+01 1jdw 423 6.53e+01 1jdw d.126.1.2 41129 1e87A 118 6.63e+01 1b6e d.169.1.1 42327 1j34B 123 6.67e+01 d.169.1.1 84049 1jmvA 141 6.75e+01 c.26.2.4 66897 2b6cA 220 6.78e+01 2a50B 168 6.80e+01 1o82A 70 6.85e+01 a.64.2.1 92630 2basA 431 6.87e+01 1te2A 226 6.90e+01 c.108.1.6 106792 1zelA 298 6.93e+01 1elwA 118 7.00e+01 1a17 a.118.8.1 19207 2gi3A 476 7.01e+01 1mhqA 148 7.11e+01 a.118.9.2 84973 1vjqA 79 7.13e+01 k.43.1.1 100830 1iooA 196 7.14e+01 d.124.1.1 71250 1pc6A 146 7.16e+01 d.262.1.1 94430 1qw1A 121 7.17e+01 2b3wA 168 7.18e+01 1g24A 211 7.24e+01 1g24A d.166.1.1 42270 1rg9A 383 7.27e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1wdvA 152 7.28e+01 1ockA 412 7.35e+01 c.117.1.1 86802 2g7oA 70 7.62e+01 1wznA 252 7.64e+01 2g5dA 422 7.67e+01 2f51A 118 7.70e+01 1r2zA 274 7.71e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1s0yA 76 7.81e+01 d.80.1.1 98314 2cruA 118 7.93e+01 1gmyA 261 7.94e+01 d.3.1.1 76236 1rloA 271 7.98e+01 1b5l 172 8.06e+01 1b5l a.26.1.3 16900 1uufA 369 8.07e+01 b.35.1.2,c.2.1.1 100006,100007 1h3nA 878 8.07e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2bw3A 534 8.08e+01 1xh3A 276 8.08e+01 1otsA 465 8.14e+01 f.20.1.1 87415 1w9zA 283 8.18e+01 1vkcA 158 8.21e+01 1hekA 131 8.22e+01 a.61.1.5 65818 2gq1A 332 8.26e+01 1pd3A 58 8.31e+01 a.30.3.1 94512 1rr7A 129 8.35e+01 a.4.1.14 105075 1nogA 177 8.36e+01 a.25.2.2 85923 2b0cA 206 8.42e+01 2f8lA 344 8.48e+01 1wdcC 156 8.49e+01 1wdcC a.39.1.5 17317 1zirA 173 8.50e+01 1pcfA 66 8.54e+01 1pcfA d.18.1.1 38142 1po5A 476 8.57e+01 a.104.1.1 94963 1j27A 102 8.59e+01 d.58.50.1 90778 2c3nA 247 8.60e+01 2gmyA 153 8.68e+01 1r29A 127 8.74e+01 d.42.1.1 96856 2bgcA 238 8.75e+01 2fbnA 198 8.84e+01 1i3jA 116 8.84e+01 1i3jA d.285.1.1 61594 1f94A 63 8.88e+01 1f94A g.7.1.1 44435 1j1nA 492 8.94e+01 c.94.1.1 83978 1noyA 388 8.95e+01 1clqA c.55.3.5 33713 1vj1A 363 8.97e+01 b.35.1.2,c.2.1.1 100794,100795 1wxiA 275 9.00e+01