# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tbxA 99 1.09e-01 a.4.5.48 106748 1rxwA 336 1.70e-01 a.60.7.1,c.120.1.2 98059,98060 1q6uA 245 2.29e-01 d.26.1.1 95998 1q6hA 224 2.51e-01 d.26.1.1 95975 1v30A 124 5.14e-01 2fbiA 142 5.79e-01 1zhvA 134 7.60e-01 2au5A 139 7.99e-01 1ub9A 100 1.06e+00 a.4.5.28 99159 1orjA 130 1.58e+00 a.24.19.1 93456 2a61A 145 1.80e+00 1io2A 213 1.81e+00 1ekeA c.55.3.1 62612 1okiA 210 1.82e+00 b.11.1.1,b.11.1.1 93255,93256 1z7uA 112 1.86e+00 1n91A 108 1.97e+00 d.206.1.1 80326 2f2eA 146 2.17e+00 2a2pA 129 2.39e+00 1sxrA 183 3.95e+00 d.118.1.1 106101 2axpA 173 4.11e+00 1qqfA 277 4.36e+00 1c3d a.102.4.4 18875 1d02A 202 5.03e+00 1d02A c.52.1.8 33313 1x79B 112 5.11e+00 1qysA 106 5.22e+00 k.41.1.1 96603 2fswA 107 5.55e+00 1mkmA 249 5.72e+00 a.4.5.33,d.110.2.2 79242,79243 1p4xA 250 5.84e+00 a.4.5.28,a.4.5.28 87784,87785 2dfkA 402 6.30e+00 1h99A 224 6.44e+00 a.142.1.1,a.142.1.1 60814,60815 2gxfA 142 6.94e+00 1faoA 126 7.50e+00 1faoA b.55.1.1 26974 1whsB 153 7.61e+00 1whtB 1wyuB 474 7.74e+00 1bouB 302 8.62e+00 1bouB c.56.6.1 33859 1zin 217 9.06e+00 1zin c.37.1.1,g.41.2.1 31915,45178 1o97C 264 9.10e+00 c.26.2.3 81232 1ss4A 153 9.13e+00 d.32.1.6 105976 1mzgA 146 9.15e+00 d.224.1.1 79696 1b9mA 265 9.58e+00 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1vqoD 177 9.89e+00 2g0uA 92 9.93e+00 1i3jA 116 1.01e+01 1i3jA d.285.1.1 61594 1xkpC 143 1.02e+01 1n1jB 97 1.03e+01 a.22.1.3 79814 1u34A 119 1.09e+01 g.76.1.1 107634 2f9dA 125 1.12e+01 2bl0B 145 1.14e+01 1vaxA 287 1.22e+01 2basA 431 1.25e+01 1ni4A 365 1.37e+01 c.36.1.11 85728 2f1rA 171 1.48e+01 1vqoL 165 1.53e+01 1zkkA 167 1.55e+01 1g55A 343 1.55e+01 1g55A c.66.1.26 34247 1rzhM 307 1.57e+01 f.26.1.1 98165 1x6oA 174 1.59e+01 b.34.5.2,b.40.4.5 109493,109494 2bkdN 134 1.60e+01 1uunA 184 1.63e+01 f.6.1.2 100012 1pytA 94 1.69e+01 1pytA d.58.3.1 39064 2trxA 108 1.77e+01 1thx c.47.1.1 32719 1tmxA 293 1.83e+01 1jf8A 131 1.85e+01 c.44.1.1 66621 1ee8A 266 1.92e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1u6pA 56 2.04e+01 2g7uA 257 2.06e+01 1ylqA 96 2.07e+01 8rucI 123 2.07e+01 1rboC d.73.1.1 39629 1v60A 123 2.08e+01 1ze3H 122 2.14e+01 2fs3A 282 2.18e+01 1tm9A 137 2.19e+01 a.225.1.1 107150 2b5eA 504 2.21e+01 1wddA 477 2.22e+01 1gwmA 153 2.23e+01 b.18.1.19 83348 2co5A 99 2.30e+01 1rloA 271 2.37e+01 1hw1A 239 2.38e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1wdnA 226 2.40e+01 1lst c.94.1.1 35816 1v1hA 103 2.41e+01 b.83.1.1,h.1.17.1 108243,108244 1nr4A 71 2.52e+01 d.9.1.1 92077 1vraB 215 2.58e+01 1yovA 537 2.61e+01 2bbhA 269 2.64e+01 1kcfA 258 2.68e+01 a.140.2.1,c.55.3.7 68434,68435 1tqzA 133 2.69e+01 1z1dA 103 2.70e+01 1i9gA 280 2.73e+01 c.66.1.13 62090 1m70A 190 2.73e+01 a.3.1.4,a.3.1.4 91200,91201 2es4D 332 2.82e+01 2a50B 168 2.87e+01 1m45A 148 2.97e+01 a.39.1.5 78598 1otsA 465 3.01e+01 f.20.1.1 87415 1o8vA 134 3.06e+01 b.60.1.2 86680 1jvr 137 3.10e+01 1jvr a.61.1.2 18132 1wrrA 301 3.19e+01 2fexA 188 3.20e+01 2bw2A 140 3.21e+01 1xsqA 168 3.26e+01 1zh5A 195 3.30e+01 1yhlA 362 3.33e+01 2ganA 190 3.35e+01 1c6vX 81 3.43e+01 1ihvA b.34.7.1 24641 1s99A 200 3.45e+01 2fbqA 235 3.47e+01 1pprM 312 3.63e+01 1pprM a.131.1.1,a.131.1.1 19502,19503 1ytaA 180 3.63e+01 1q59A 172 3.67e+01 f.1.4.1 95881 1b35C 282 3.73e+01 1b35C 1pa1A 310 3.81e+01 c.45.1.2 94404 1e87A 118 3.81e+01 1b6e d.169.1.1 42327 2d9iA 96 3.88e+01 1gk8I 140 4.18e+01 d.73.1.1 65242 2fj6A 82 4.21e+01 1qw1A 121 4.41e+01 1w0hA 204 4.48e+01 1lvfA 110 4.50e+01 a.47.2.1 74280 1jyrA 96 4.56e+01 d.93.1.1 71969 1xedA 117 4.59e+01 1b5l 172 4.61e+01 1b5l a.26.1.3 16900 1avyA 74 4.63e+01 1avyB h.1.17.1 45656 1gk8A 475 4.64e+01 c.1.14.1,d.58.9.1 65234,65235 1u7eB 154 4.69e+01 2cvdA 198 4.73e+01 1yemA 179 4.79e+01 1oeyJ 107 4.86e+01 d.15.2.2 92804 1dbxA 158 4.89e+01 1dbuA d.116.1.1 40928 1xttA 216 4.94e+01 2azeA 155 5.03e+01 1ko6A 187 5.29e+01 b.119.1.1 77471 1ws0A 156 5.43e+01 1g24A 211 5.44e+01 1g24A d.166.1.1 42270 1iyhA 198 5.56e+01 a.45.1.1,c.47.1.5 83790,83791 1xn5A 146 5.62e+01 1txlA 215 5.66e+01 b.60.1.4 107429 1oltA 457 5.69e+01 c.1.28.2 93334 1aky 221 5.74e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1yqbA 100 5.78e+01 1z0xA 220 5.96e+01 1mxmA 254 5.99e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 2aj7A 163 6.00e+01 2ah6A 208 6.02e+01 1s7mA 174 6.14e+01 b.144.1.1 98649 1zx4A 192 6.19e+01 1e85A 127 6.22e+01 1bbhA a.24.3.2 16549 1vlyA 338 6.50e+01 b.44.2.1,d.250.1.1 108871,108872 2ethA 154 6.53e+01 1cvrA 435 6.56e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1n81A 186 6.58e+01 a.185.1.1 85388 1tl2A 236 6.61e+01 1tl2A b.67.1.1 27541 1ltqA 301 6.70e+01 c.108.1.9,c.37.1.1 78208,78209 1fpoA 171 6.77e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1vddA 228 6.79e+01 e.49.1.1 108519 1efdN 266 6.92e+01 1efdN c.92.2.1 35597 1b0nA 111 6.97e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 2f71A 298 6.97e+01 2a6cA 83 7.03e+01 2b3wA 168 7.09e+01 1pmzA 86 7.11e+01 a.39.1.10 104195 1r29A 127 7.14e+01 d.42.1.1 96856 1r45A 204 7.22e+01 2f42A 179 7.31e+01 1r1qA 100 7.39e+01 d.93.1.1 104763 1jatB 138 7.41e+01 1jatB d.20.1.1 62819 1ytqA 204 7.50e+01 1y14B 171 7.50e+01 1a0p 290 7.55e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1zpdA 568 7.69e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 2fug5 207 7.71e+01 1g8iA 190 7.71e+01 1rec a.39.1.5 60363 1wmiA 90 7.72e+01 1wa3A 205 7.77e+01 1z8uA 102 7.78e+01 1wfwA 74 7.78e+01 1q3eA 207 7.79e+01 b.82.3.2 95669 1wgvA 124 7.81e+01 1fqjC 42 7.86e+01 1fqjC j.51.1.1 46332 1ars 396 8.03e+01 1ajsA c.67.1.1 34287 1zirA 173 8.14e+01 1x1nA 524 8.15e+01 1ev2E 220 8.17e+01 1cvsC b.1.1.4,b.1.1.4 21738,21739 2fiuA 99 8.32e+01 2cdpA 160 8.47e+01 1r3eA 309 8.56e+01 b.122.1.1,d.265.1.2 96907,96908 1uuzA 137 8.60e+01 d.233.1.1 100024 1rsgA 516 8.61e+01 1q5xA 161 8.63e+01 c.8.7.1 95947 1nfvA 179 8.64e+01 a.25.1.1 85642 1j6qA 136 8.64e+01 b.40.9.1 77091 1wznA 252 8.80e+01 1dro 122 8.80e+01 1btn b.55.1.1 26954 1uz5A 402 8.81e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 2as9A 210 8.84e+01 1wdvA 152 8.86e+01 1xjjA 644 8.86e+01 1y0uA 96 8.88e+01 1cliA 345 8.99e+01 1cliA d.79.4.1,d.139.1.1 39816,41459