# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yyvA 131 1.32e-01 1tbxA 99 1.48e-01 a.4.5.48 106748 1rxwA 336 2.03e-01 a.60.7.1,c.120.1.2 98059,98060 1v30A 124 3.29e-01 2fbiA 142 3.79e-01 1okiA 210 4.41e-01 b.11.1.1,b.11.1.1 93255,93256 2a2pA 129 4.73e-01 1zhvA 134 7.30e-01 2a61A 145 1.22e+00 1czj 111 1.58e+00 3cyr a.138.1.1 19663 1n91A 108 1.76e+00 d.206.1.1 80326 1mqsA 671 2.04e+00 e.25.1.1 79414 1z7uA 112 2.60e+00 1ub9A 100 3.03e+00 a.4.5.28 99159 2axpA 173 3.81e+00 1sxrA 183 3.91e+00 d.118.1.1 106101 1o97C 264 4.15e+00 c.26.2.3 81232 1qysA 106 4.18e+00 k.41.1.1 96603 1io2A 213 4.28e+00 1ekeA c.55.3.1 62612 2bbhA 269 4.43e+00 1b35C 282 5.44e+00 1b35C 1pqxA 91 5.55e+00 d.267.1.1 104296 1bouB 302 5.80e+00 1bouB c.56.6.1 33859 1orjA 130 5.91e+00 a.24.19.1 93456 1q6uA 245 6.23e+00 d.26.1.1 95998 1ywlA 96 6.39e+00 2au5A 139 6.42e+00 1q6hA 224 6.55e+00 d.26.1.1 95975 1mzgA 146 7.94e+00 d.224.1.1 79696 2g0uA 92 8.11e+00 1h99A 224 8.65e+00 a.142.1.1,a.142.1.1 60814,60815 2fswA 107 8.70e+00 2cwoA 197 8.93e+00 2dfkA 402 9.00e+00 2f2eA 146 9.86e+00 1qqfA 277 1.09e+01 1c3d a.102.4.4 18875 1mkmA 249 1.12e+01 a.4.5.33,d.110.2.2 79242,79243 1d02A 202 1.25e+01 1d02A c.52.1.8 33313 2co5A 99 1.29e+01 2bkdN 134 1.37e+01 8rucA 475 1.46e+01 1burA c.1.14.1,d.58.9.1 29339,39245 2f9dA 125 1.62e+01 1ylqA 96 1.63e+01 1mpuA 138 1.65e+01 d.169.1.1 85040 1zip 217 1.73e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1ss4A 153 1.74e+01 d.32.1.6 105976 1p4xA 250 1.74e+01 a.4.5.28,a.4.5.28 87784,87785 1faoA 126 1.76e+01 1faoA b.55.1.1 26974 2trxA 108 1.80e+01 1thx c.47.1.1 32719 2ganA 190 1.84e+01 2basA 431 1.84e+01 1zin 217 1.90e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1q59A 172 1.94e+01 f.1.4.1 95881 1gwmA 153 2.02e+01 b.18.1.19 83348 2fug5 207 2.03e+01 1tm9A 137 2.08e+01 a.225.1.1 107150 1v1hA 103 2.13e+01 b.83.1.1,h.1.17.1 108243,108244 1b9mA 265 2.16e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1v60A 123 2.20e+01 1u34A 119 2.20e+01 g.76.1.1 107634 1g55A 343 2.21e+01 1g55A c.66.1.26 34247 1s7hA 200 2.21e+01 d.58.48.2 105349 1zx4A 192 2.23e+01 1b0nA 111 2.25e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1sqlA 146 2.27e+01 d.96.1.3 105925 1lj9A 144 2.28e+01 a.4.5.28 78035 1ztsA 139 2.30e+01 1yovA 537 2.31e+01 1ox3A 109 2.35e+01 h.1.17.1 93668 1ddf 127 2.39e+01 1ddf a.77.1.2 18423 1ytaA 180 2.43e+01 1tl2A 236 2.47e+01 1tl2A b.67.1.1 27541 2b5eA 504 2.54e+01 2fj6A 82 2.55e+01 1pytA 94 2.58e+01 1pytA d.58.3.1 39064 1vraB 215 2.69e+01 1wrrA 301 2.71e+01 1ni4A 365 2.73e+01 c.36.1.11 85728 2gxfA 142 2.73e+01 1jf8A 131 2.76e+01 c.44.1.1 66621 1nb5I 98 2.77e+01 d.17.1.2 80381 1uox 296 2.80e+01 1uox 1u6pA 56 2.97e+01 1xsrA 168 2.99e+01 1vqoD 177 3.01e+01 1vaxA 287 3.01e+01 3rubS 123 3.02e+01 1rboC d.73.1.1 39616 1gggA 226 3.04e+01 1lst c.94.1.1 35817 1xmaA 145 3.09e+01 1jmaA 290 3.35e+01 b.1.1.1 63177 1m70A 190 3.37e+01 a.3.1.4,a.3.1.4 91200,91201 2fexA 188 3.41e+01 1pd21 199 3.50e+01 1pd21 1z1dA 103 3.50e+01 1xriA 151 3.54e+01 1e87A 118 3.55e+01 1b6e d.169.1.1 42327 1a6bB 40 3.57e+01 1a6bB g.40.1.1 45172 2c0cA 362 3.65e+01 1rloA 271 3.66e+01 2ah6A 208 3.67e+01 2fbqA 235 3.69e+01 1zh5A 195 3.69e+01 1r4uA 301 3.75e+01 d.96.1.4,d.96.1.4 97047,97048 1kcxA 518 3.75e+01 b.92.1.3,c.1.9.6 90953,90954 1vr0A 247 3.76e+01 1dpuA 99 3.79e+01 1dpuA a.4.5.16 16150 1qr6A 584 3.79e+01 1qr6A c.2.1.7,c.58.1.3 30293,33941 8rucI 123 3.83e+01 1rboC d.73.1.1 39629 1o8vA 134 3.88e+01 b.60.1.2 86680 1yhlA 362 3.92e+01 1xedA 117 4.03e+01 1ze3H 122 4.11e+01 1wdnA 226 4.14e+01 1lst c.94.1.1 35816 1hw1A 239 4.25e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1oqyA 368 4.25e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1br1B 150 4.26e+01 1wdcC a.39.1.5 17309 1sx5A 244 4.28e+01 c.52.1.2 99023 2adcA 229 4.30e+01 1wddA 477 4.52e+01 1xn5A 146 4.56e+01 1yqcA 170 4.58e+01 1jqgA 433 4.60e+01 c.56.5.1,d.58.3.1 71791,71792 1vqsA 116 4.64e+01 2b3wA 168 4.73e+01 1w0hA 204 4.84e+01 2bl0B 145 4.86e+01 1pa1A 310 4.90e+01 c.45.1.2 94404 1kevA 351 4.90e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1souA 194 4.93e+01 c.124.1.6 105858 1theA 260 4.97e+01 1theB d.3.1.1 37056 1ws0A 156 4.97e+01 1j9aA 184 4.98e+01 c.55.3.5 84135 1g24A 211 5.00e+01 1g24A d.166.1.1 42270 1i3jA 116 5.31e+01 1i3jA d.285.1.1 61594 1jyrA 96 5.35e+01 d.93.1.1 71969 1r0vA 305 5.35e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1rvaA 244 5.37e+01 1rvaA c.52.1.2 33240 1q5xA 161 5.40e+01 c.8.7.1 95947 1r3eA 309 5.42e+01 b.122.1.1,d.265.1.2 96907,96908 1f8yA 157 5.45e+01 1f8xA c.23.14.1 31395 2a50B 168 5.49e+01 1s7mA 174 5.49e+01 b.144.1.1 98649 1aoa 275 5.60e+01 1aoa a.40.1.1,a.40.1.1 17396,17397 1yemA 179 5.60e+01 1cvrA 435 5.60e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1oltA 457 5.62e+01 c.1.28.2 93334 1yf2A 425 5.64e+01 1zkkA 167 5.66e+01 1xkpC 143 5.68e+01 2g7uA 257 5.70e+01 2fiuA 99 5.76e+01 1ob8A 135 5.81e+01 2fs3A 282 5.84e+01 1ee8A 266 5.89e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2fkkA 206 5.94e+01 1vlmA 219 6.00e+01 c.66.1.41 108836 1mm4A 170 6.01e+01 f.4.1.2 79294 1bv1 159 6.02e+01 1bv1 d.129.3.1 41313 2azqA 311 6.14e+01 1xsqA 168 6.18e+01 2axwA 134 6.23e+01 2es4D 332 6.30e+01 2h17A 181 6.33e+01 1othA 321 6.36e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1gk8I 140 6.37e+01 d.73.1.1 65242 1r45A 204 6.45e+01 1chmA 401 6.51e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 2d2mB 142 6.57e+01 2bw2A 140 6.59e+01 1p6pA 125 6.74e+01 b.60.1.2 87839 1w0bA 102 6.75e+01 a.7.11.1 108985 1qorA 327 6.80e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1avyA 74 6.81e+01 1avyB h.1.17.1 45656 1m45A 148 6.84e+01 a.39.1.5 78598 1qw1A 121 6.93e+01 1jvr 137 6.94e+01 1jvr a.61.1.2 18132 2a9kB 223 6.97e+01 1ri7A 171 7.02e+01 a.4.5.32,d.58.4.2 97504,97505 1eonA 245 7.04e+01 1rvaA c.52.1.2 33238 1n81A 186 7.06e+01 a.185.1.1 85388 1tqzA 133 7.09e+01 1zfpE 98 7.10e+01 1griA d.93.1.1 40465 1lvfA 110 7.18e+01 a.47.2.1 74280 1s99A 200 7.18e+01 1vlwA 217 7.22e+01 c.1.10.1 108868 1a8vA 121 7.27e+01 1a62 a.140.3.1,b.40.4.5 64712,64713 1x6oA 174 7.31e+01 b.34.5.2,b.40.4.5 109493,109494 1ko6A 187 7.36e+01 b.119.1.1 77471 1wa3A 205 7.36e+01 1wbeA 209 7.40e+01 1y01A 102 7.43e+01 1p9qC 256 7.45e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1nrkA 328 7.48e+01 b.44.2.1,d.250.1.1 92089,92090 2baa 243 7.52e+01 1cnsA d.2.1.1 36243 1wlnA 120 7.57e+01 2e2aA 105 7.58e+01 a.7.2.1 88499 1mxmA 254 7.61e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1vlyA 338 7.82e+01 b.44.2.1,d.250.1.1 108871,108872 1nr4A 71 8.01e+01 d.9.1.1 92077 1x1nA 524 8.03e+01 1q4mA 221 8.04e+01 a.132.1.3 95805 1e2aA 105 8.14e+01 1e2aA a.7.2.1 16322 1stzA 338 8.19e+01 a.4.5.51,d.110.2.3 106009,106010 1gnkA 112 8.19e+01 2pii d.58.5.1 39073 1po5A 476 8.26e+01 a.104.1.1 94963 1zirA 173 8.34e+01 1hh1A 143 8.36e+01 1gefA c.52.1.18 61036 1efdN 266 8.40e+01 1efdN c.92.2.1 35597 1x71A 178 8.47e+01 1yqbA 100 8.47e+01 2d1uA 104 8.55e+01 2f71A 298 8.62e+01 1g9zA 152 8.66e+01 1bp7A d.95.2.1 60408 1wgvA 124 8.67e+01 1z0xA 220 8.71e+01 1wmiA 90 8.71e+01 1t9iA 163 8.73e+01 2c4jA 218 8.90e+01