Sequence numbers correspond to the following labels:

1. • T0327 SR346, Bacillus subtlis, 102 res
2. • gi|2633549|emb|CAB13052.1|_1:94 yjcQ [Bacillus subtilis subsp. subtilis str. 168]
   • gi|16078260|ref|NP_389077.1| hypothetical protein BSU11950 [Bacillus subtilis subsp. subtilis str. 168]
3. • gi|38731447|gb|AAR27377.1|_1:111 putative major head protein [Lactobacillus johnsonii prophage Lj928]
   • gi|41179318|ref|NP_958536.1| putative major head protein [Lactobacillus johnsonii prophage Lj928]
   • gi|42519307|ref|NP_965237.1| Lj928 prophage major head protein [Lactobacillus johnsonii NCC 533]
   • gi|41583595|gb|AAS09203.1| Lj928 prophage major head protein [Lactobacillus johnsonii NCC 533]
4. • gi|58253988|gb|AAV42225.1|_12:123 hypothetical protein LBA0333 [Lactobacillus acidophilus NCFM]
   • gi|58336671|ref|YP_193256.1| hypothetical protein LBA0333 [Lactobacillus acidophilus NCFM]
5. • gi|13487834|ref|NP_108712.1|_1:110 unknown [Bacteriophage Tuc2009]
   • gi|13346849|gb|AAK19861.1| unknown [Bacteriophage Tuc2009]
6. • gi|34763367|ref|ZP_00144320.1|_6:105 hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
   • gi|27886981|gb|EAA24100.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]

                    10                    20            30             
                    |                     |             |             
   1 ...MNKDK...LRYAI...LKEI...F.EGN.....TP....LSENDIGVTEDQ.....FDDAVN
   2 ...MNKDK...LRYAI...LKEI...F.EGN.....TP....LSENDIGVTEDQ.....FDDAVN
   3 ...MAHNDyftVAYKIlsyLKYC...YeEGQ.....NPdldiLDAPTFKISNNQ.....FYKTLM
   4 dlkANKNNyfnIAYKIllyLKYC...Y.ENGiev..DPdi..LSSENIGISEKQ.....FVLTLQ
   5 ...MAKDDffyISYKI...LAYL...Y.HAM.....KK....GEKIDPGVFDPQny8pyLNDILE
   6 ...----T...TIFQI...LKAIdvaF.ENQdfnyeTT....LDLKKLKISKHR.....LELFIE


      40          50             60           70        80        90   
      |           |              |            |         |         |   
   1 FLKREGYIIG..VHY..SD..DRPHLY.KLG.P.EL.TEKGENYLKENGTWSKAYKTIKEIKDWI
   2 FLKREGYIIG..VHY..SD..DRPHLY.KLG.P.EL.TEKGENYLKENGTWSKAYKTIKEIKDWI
   3 MLMDDGYIKG..LKF..TPtkTGTIVS.NMD.R.VYiTSDGLQYLEENTMMKKAYKIFKEVRDWL
   4 MLLEDGYIKG..VSL..KPtiQGPTIIcNIQ.D.TYaTSSGLQYLIENSMMHKAYKVSKEVRDWI
   5 ELKENGYIKG..VSFieTK..DGKLIT.GLS.DiKI.TIKGIEYLDDNSMMKKAYKTLKELKDWI
   6 ELVDKNYIKGltVRH..SI..NGNPII.SIGnP.RL.TLDGLDFLENNSSMKKAYKFLKEAKEWI


          100  
           |  
   1 KLEHHHHHH
   2 K--------
   3 PLMK-----
   4 PLLK-----
   5 PGT------
   6 PGL------