# List of top-scoring protein chains for T0327.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xdmA 365 5.67e-02 1qo5A 363 8.87e-02 1fbaA c.1.10.1 29102 1fdjA 363 8.90e-02 1fbaA c.1.10.1 59772 1yyvA 131 2.10e-01 1i1gA 141 2.19e-01 a.4.5.32,d.58.4.2 65982,65983 1fbaA 361 1.18e+00 1fbaA c.1.10.1 29120 2a61A 145 1.20e+00 1i94H 138 1.93e+00 1seiA d.140.1.1 61999 1v1hA 103 2.06e+00 b.83.1.1,h.1.17.1 108243,108244 2fswA 107 2.20e+00 1fjgH 138 2.26e+00 1seiA d.140.1.1 41468 1an7A 136 2.30e+00 1seiA d.140.1.1 41465 1tbxA 99 2.51e+00 a.4.5.48 106748 4rubS 123 2.82e+00 1rboC d.73.1.1 39621 3rubS 123 3.19e+00 1rboC d.73.1.1 39616 1vyhC 410 4.23e+00 1un0A 443 4.79e+00 a.118.1.1 99641 1wa5B 530 4.82e+00 2c1tA 454 4.86e+00 1bk5A 422 4.87e+00 1bk5A a.118.1.1 19130 1ee5A 424 5.11e+00 1ee4A a.118.1.1 19132 1ee4A 423 5.27e+00 1ee4A a.118.1.1 19128 2c1hA 328 5.32e+00 1xfbA 365 5.83e+00 2f2eA 146 5.86e+00 1s1hH 129 5.93e+00 i.1.1.1 105160 1bk6A 422 6.61e+00 1bk5A a.118.1.1 19133 1uktA 686 6.93e+00 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 99525,99526,99527,99528 1v3jA 686 6.97e+00 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 108305,108306,108307,108308 1d7fA 686 6.98e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21848,22517,27755,28742 1pamA 686 6.98e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1v3kA 686 7.00e+00 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 108313,108314,108315,108316 1p4xA 250 7.35e+00 a.4.5.28,a.4.5.28 87784,87785 1u9pA 120 7.78e+00 1mxhA 276 8.20e+00 c.2.1.2 91490 1xmaA 145 8.47e+00 1uksA 686 8.81e+00 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 99517,99518,99519,99520 1bxnI 139 9.46e+00 1rboC d.73.1.1 39666 1zbfA 142 9.82e+00 2g7uA 257 9.86e+00 1qhtA 775 1.14e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1zblA 139 1.18e+01 2g8fA 142 1.19e+01 2g8iA 142 1.19e+01 1x1gA 129 1.23e+01 2cg4A 152 1.38e+01 1nyrA 645 1.40e+01 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 92354,92355,92356,92357 1rduA 116 1.48e+01 c.55.5.1 104890 1pj9A 686 1.50e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 94754,94755,94756,94757 2b0lA 102 1.54e+01 1kclA 686 1.56e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 68445,68446,68447,68448 1pezA 686 1.58e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 94600,94601,94602,94603 1eo5A 686 1.59e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21828,22497,27735,28722 1cgw 686 1.59e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21822,22491,27729,28716 1ot1A 686 1.60e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87392,87393,87394,87395 1d3cA 686 1.60e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1cxlA 686 1.60e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 1ot2A 686 1.60e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87396,87397,87398,87399 1cdg 686 1.60e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21816,22485,27723,28710 1cgy 686 1.61e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21823,22492,27730,28717 1kckA 686 1.61e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 68441,68442,68443,68444 1cgx 686 1.63e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21832,22501,27739,28726 1cgv 686 1.64e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21820,22489,27727,28714 1aipC 196 1.70e+01 1tfe a.5.2.2,d.43.1.1 58930,58931 1m5yA 408 1.79e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 1jzoA 216 1.81e+01 c.47.1.9,d.17.3.1 84267,84268 1jzdA 220 1.81e+01 c.47.1.9,d.17.3.1 84257,84258 1tcmA 686 1.84e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21833,22502,27740,28727 1s95A 333 1.90e+01 d.159.1.3 105375 1uzdC 134 1.92e+01 1bouB 302 1.92e+01 1bouB c.56.6.1 33859 1yfkA 262 1.96e+01 1eejA 216 2.02e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 1wa3A 205 2.04e+01 1zuoA 186 2.06e+01 1hw1A 239 2.10e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1e2xA 243 2.11e+01 1e2xA a.4.5.6,a.78.1.1 16113,18443 1vlwA 217 2.17e+01 c.1.10.1 108868 1ydpA 275 2.24e+01 1gxrA 337 2.29e+01 b.69.4.1 70722 1ur4A 399 2.42e+01 1dtuA 686 2.45e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21840,22509,27747,28734 2b8tA 223 2.51e+01 1xmrA 243 2.54e+01 1y2qA 143 2.57e+01 1ja3A 127 2.63e+01 d.169.1.1 71621 1iauA 227 2.98e+01 5ptp b.47.1.2 62124 1fq3A 227 2.98e+01 5ptp b.47.1.2 26376 2fbiA 142 3.05e+01 1d2dA 59 3.07e+01 1r1bA a.16.1.3 16397 1d5aA 733 3.12e+01 1tgoA c.55.3.5,e.8.1.1 33723,43012 1e6vA 553 3.17e+01 1mroA a.89.1.1,d.58.31.2 18527,39445 2gr8A 99 3.28e+01 1wao1 477 3.35e+01 1l7pA 211 3.38e+01 c.108.1.4 73670 1l7mA 211 3.39e+01 c.108.1.4 73664 1j97A 211 3.40e+01 1f5sA c.108.1.4 62753 1sxrA 183 3.40e+01 d.118.1.1 106101 1hqkA 154 3.42e+01 c.16.1.1 65902 1d9uA 154 3.43e+01 1am7A d.2.1.4 59111 1v1iA 109 3.43e+01 b.83.1.1,h.1.17.1 108255,108256 1am7A 158 3.46e+01 1am7A d.2.1.4 36981 1xx4A 261 3.47e+01 1u8eA 728 3.67e+01 b.70.3.1,c.69.1.24 107733,107734 1x70A 728 3.68e+01 1tk3A 728 3.68e+01 b.70.3.1,c.69.1.24 107069,107070 2bgrA 738 3.69e+01 1pfqA 731 3.69e+01 b.70.3.1,c.69.1.24 88061,88062 1wcyA 740 3.70e+01 1s2jA 209 3.71e+01 d.118.1.1 105227 1r9mA 733 3.73e+01 b.70.3.1,c.69.1.24 104870,104871 1r9nA 739 3.74e+01 1iyxA 432 3.87e+01 c.1.11.1,d.54.1.1 83815,83816 1c9wA 315 4.03e+01 1frb c.1.7.1 28699 1w9yA 319 4.06e+01 1ln4A 104 4.26e+01 d.68.4.1 74043 1ju2A 536 4.37e+01 c.3.1.2,d.16.1.1 77169,77170 1bg1A 596 4.43e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 2gr7A 129 4.80e+01 1ub9A 100 4.84e+01 a.4.5.28 99159 1uzhC 122 5.01e+01 1n2aA 201 5.05e+01 a.45.1.1,c.47.1.5 91553,91554 2b76A 602 5.06e+01 1kf6A 602 5.07e+01 a.7.3.1,c.3.1.4,d.168.1.1 72394,72395,72396 1ir21 140 5.07e+01 2aw4T 100 5.13e+01 1pdnC 128 5.26e+01 6paxA a.4.1.5 16047 2cucA 70 5.30e+01 1o5cB 253 5.33e+01 2d31A 276 5.38e+01 1x4zA 121 5.41e+01 1gj7B 253 5.47e+01 1ulzA 451 5.47e+01 b.84.2.1,c.30.1.1,d.142.1.2 99575,99576,99577 1lmwB 253 5.50e+01 5ptp 1ku9A 152 5.58e+01 a.4.5.36 77544 1zboA 210 5.65e+01 1k61A 60 5.67e+01 a.4.1.1 77270 1sig 339 5.77e+01 1sig a.177.1.1 19068 1ejnA 253 6.03e+01 5ptp b.47.1.2 26356 1mnmC 87 6.04e+01 1akhB a.4.1.1 15983 1zl9A 207 6.07e+01 1vdgA 197 6.27e+01 1qvbA 481 6.28e+01 1qvbA c.1.8.4 28983 1gs5A 258 6.33e+01 c.73.1.2 70395 1lucA 355 6.38e+01 1lucA c.1.16.1 29547 1z7uA 112 6.42e+01 2aqeA 90 6.55e+01 1qqcA 773 6.74e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1iomA 377 6.85e+01 a.103.1.1 83698 1r7jA 95 6.86e+01 a.4.5.49 104836 2fm8A 135 6.91e+01 1avv 151 7.10e+01 1efnB d.102.1.1 40703 1efnB 152 7.14e+01 1efnB d.102.1.1 40699 2nef 136 7.17e+01 1efnB d.102.1.1 40704 1i6uA 130 7.24e+01 d.140.1.1 61850 1y0uA 96 7.32e+01 1yn9A 169 7.38e+01 1r29A 127 7.42e+01 d.42.1.1 96856 1mo0A 275 7.49e+01 c.1.1.1 79329 1xx6A 191 7.57e+01 1jagA 241 7.59e+01 c.37.1.1 66463 1zy9A 564 7.76e+01 1gmlA 178 7.84e+01 c.8.5.2 70273 1rfnA 235 7.87e+01 5ptp b.47.1.2 26354 1bd7A 176 7.92e+01 1amm b.11.1.1 23618 1h1yA 228 7.92e+01 c.1.2.2 76506 1cvrA 435 8.02e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 2acvA 463 8.02e+01 2acwA 465 8.03e+01 2cujA 108 8.03e+01 1zagA 274 8.41e+01 1agdA b.1.1.2,d.19.1.1 20851,38315 1gi8B 245 8.50e+01 1pta 327 8.53e+01 1pscA c.1.9.3 29064 1sqjA 789 8.55e+01 b.69.13.1,b.69.13.1 105918,105919 1oweA 245 8.57e+01 b.47.1.2 93642 1dpmA 329 8.57e+01 1pscA c.1.9.3 29062 1sqtA 245 8.57e+01 b.47.1.2 98970 1eywA 331 8.62e+01 1pscA c.1.9.3 29057 1i0dA 332 8.63e+01 1pscA c.1.9.3 61487 1fv9A 245 8.65e+01 5ptp b.47.1.2 26283 1jgmA 336 8.68e+01 1pscA c.1.9.3 62953 2clqA 295 8.70e+01 1sjpA 504 8.80e+01