# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a61A 145 1.63e-02 1tbxA 99 3.45e-02 a.4.5.48 106748 2f2eA 146 4.18e-02 2g7uA 257 2.43e-01 1r7jA 95 3.09e-01 a.4.5.49 104836 2fbiA 142 3.39e-01 2fswA 107 5.18e-01 1z7uA 112 9.74e-01 1ub9A 100 1.01e+00 a.4.5.28 99159 1hw1A 239 1.03e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 2ca6A 386 1.12e+00 1p4xA 250 1.14e+00 a.4.5.28,a.4.5.28 87784,87785 1a8y 367 1.56e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1k61A 60 1.67e+00 a.4.1.1 77270 1hl2A 297 1.90e+00 c.1.10.1 83581 1cvrA 435 1.92e+00 1cvrA b.1.18.12,c.17.1.2 21949,31006 1gxrA 337 2.40e+00 b.69.4.1 70722 1sxrA 183 2.66e+00 d.118.1.1 106101 1zhvA 134 3.42e+00 1bouB 302 3.72e+00 1bouB c.56.6.1 33859 1o82A 70 3.81e+00 a.64.2.1 92630 1ir21 140 4.25e+00 1seiA 130 4.94e+00 1seiA d.140.1.1 41463 2c4jA 218 5.21e+00 1v1hA 103 5.48e+00 b.83.1.1,h.1.17.1 108243,108244 1a8d 452 5.70e+00 1a8d b.29.1.6,b.42.4.2 24262,25607 1fnd 314 5.70e+00 1fnc b.43.4.2,c.25.1.1 25626,31516 1sfxA 109 6.03e+00 a.4.5.50 105505 1zaiA 363 6.69e+00 1utg 70 7.51e+00 1utg a.101.1.1 18813 1fm4A 159 7.69e+00 1bv1 d.129.3.1 76186 1bx1A 314 8.02e+00 1fnc b.43.4.2,c.25.1.1 25629,31519 1gkpA 458 8.04e+00 b.92.1.3,c.1.9.6 70231,70232 1lj9A 144 8.05e+00 a.4.5.28 78035 1ois 223 8.71e+00 1a36A e.15.1.1 43267 1zbfA 142 9.20e+00 1gk8I 140 9.23e+00 d.73.1.1 65242 1jgsA 138 9.43e+00 a.4.5.28 66683 1o97C 264 9.48e+00 c.26.2.3 81232 1nrwA 288 9.51e+00 c.108.1.10 86128 2b0lA 102 9.62e+00 2d13A 227 9.97e+00 1faaA 124 1.01e+01 1erv c.47.1.1 32738 2c5uA 375 1.06e+01 1dofA 403 1.10e+01 1c3cA a.127.1.1 19429 1h1yA 228 1.16e+01 c.1.2.2 76506 2esnA 310 1.16e+01 2cohA 202 1.17e+01 1yewA 382 1.18e+01 2ganA 190 1.32e+01 2gr8A 99 1.34e+01 2bz1A 196 1.40e+01 1zin 217 1.50e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1x79B 112 1.53e+01 1v30A 124 1.67e+01 1r1tA 122 1.72e+01 a.4.5.5 104769 3fapB 94 1.73e+01 1nsgB a.24.7.1 16612 1wdcA 64 1.78e+01 1wdcA 1bjaA 95 1.80e+01 1bjaA a.4.5.9 16122 1wi5A 119 1.81e+01 1erjA 393 1.84e+01 1erjA b.69.4.1 27660 1r6xA 395 1.85e+01 b.122.1.3,c.26.1.5 97167,97168 2agaA 190 1.87e+01 1y2qA 143 1.90e+01 1stzA 338 1.91e+01 a.4.5.51,d.110.2.3 106009,106010 1zboA 210 1.97e+01 1rxwA 336 2.00e+01 a.60.7.1,c.120.1.2 98059,98060 1vqo2 50 2.04e+01 8rucI 123 2.13e+01 1rboC d.73.1.1 39629 1yz1A 174 2.23e+01 1u7lA 392 2.29e+01 1zy9A 564 2.30e+01 1yh2A 175 2.31e+01 1ur4A 399 2.36e+01 1gs5A 258 2.54e+01 c.73.1.2 70395 1wddS 128 2.59e+01 1bg1A 722 2.69e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 2fbhA 146 2.70e+01 1hqz1 141 2.77e+01 1avyA 74 2.79e+01 1avyB h.1.17.1 45656 1z67A 135 2.83e+01 1jflA 228 2.86e+01 c.78.2.1,c.78.2.1 71656,71657 2bw2A 140 2.96e+01 7fd1A 106 3.01e+01 1a6l d.58.1.2 38953 2g0uA 92 3.02e+01 1g1tA 157 3.12e+01 d.169.1.1,g.3.11.1 65104,65105 1oneA 436 3.13e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1s4nA 348 3.16e+01 c.68.1.16 98501 1pm1X 180 3.21e+01 b.60.1.1 104189 1gefA 123 3.22e+01 1gefA c.52.1.18 60465 2cujA 108 3.28e+01 1v4aA 440 3.40e+01 a.24.16.4,d.218.1.9 108350,108351 1sjdA 368 3.46e+01 c.1.11.2,d.54.1.1 105632,105633 1exqA 154 3.47e+01 1b9dA c.55.3.2 33646 1kzlA 208 3.47e+01 b.43.4.3,b.43.4.3 77635,77636 1t6t1 118 3.48e+01 2fj6A 82 3.53e+01 1s1hC 192 3.56e+01 i.1.1.1 105156 1ob8A 135 3.63e+01 2lisA 136 3.69e+01 1lis a.19.1.1 16405 1qfhA 212 3.76e+01 1qfhA b.1.18.10,b.1.18.10 21893,21894 1lyqA 104 3.77e+01 b.1.18.17 78302 1tkeA 224 3.80e+01 2al2A 436 3.81e+01 2cdcA 366 3.86e+01 1yj7A 171 3.87e+01 1s1fA 406 3.98e+01 1xewY 172 4.02e+01 1vf5G 37 4.04e+01 f.23.26.1 100587 1fxxA 482 4.12e+01 1fxxA c.55.3.5 33726 1rw1A 114 4.14e+01 2axtK 37 4.17e+01 1ddf 127 4.20e+01 1ddf a.77.1.2 18423 1wdnA 226 4.31e+01 1lst c.94.1.1 35816 1wdjA 187 4.34e+01 3eipA 84 4.38e+01 3eipA d.26.2.1 38434 1w8xM 83 4.47e+01 1orjA 130 4.52e+01 a.24.19.1 93456 1b5l 172 4.54e+01 1b5l a.26.1.3 16900 1wa3A 205 4.59e+01 1z91A 147 4.61e+01 1l7mA 211 4.63e+01 c.108.1.4 73664 1oltA 457 4.66e+01 c.1.28.2 93334 1whmA 92 4.75e+01 1ecsA 126 4.82e+01 1ecsA d.32.1.2 59407 1ujpA 271 4.85e+01 c.1.2.4 99462 2anuA 255 4.86e+01 1shuX 182 4.88e+01 c.62.1.1 98882 1xn7A 78 4.88e+01 1bia 321 5.00e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1bm9A 122 5.02e+01 1bm9A a.4.5.7 16116 1fvkA 189 5.04e+01 1fvkA c.47.1.13 90351 2al1A 436 5.07e+01 1vcvA 226 5.16e+01 1uxoA 192 5.20e+01 c.69.1.31 108121 1ccr 112 5.22e+01 1ycc a.3.1.1 15877 1zs4A 83 5.30e+01 1us5A 314 5.30e+01 c.94.1.1 99856 1hh1A 143 5.36e+01 1gefA c.52.1.18 61036 1xqaA 113 5.41e+01 1yodA 30 5.41e+01 1kgsA 225 5.42e+01 a.4.6.1,c.23.1.1 68596,68597 1dusA 194 5.44e+01 1dusA c.66.1.4 34182 1mk4A 157 5.44e+01 d.108.1.1 84979 1ytqA 204 5.49e+01 2eveA 157 5.51e+01 1fmeA 28 5.56e+01 k.12.1.1 59878 2cyeA 133 5.58e+01 1ars 396 5.59e+01 1ajsA c.67.1.1 34287 1mkmA 249 5.59e+01 a.4.5.33,d.110.2.2 79242,79243 1yovA 537 5.63e+01 1noyA 388 5.70e+01 1clqA c.55.3.5 33713 1h6gA 256 5.80e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 2cb2A 318 5.95e+01 2g45A 129 5.96e+01 1rp3B 88 5.97e+01 a.137.11.1 97681 2d1uA 104 5.98e+01 1wj5A 120 6.03e+01 1h8eI 50 6.04e+01 1e79I a.137.8.1 60758 1jofA 365 6.05e+01 b.69.10.1 71775 1jl0A 334 6.07e+01 1jenA d.156.1.1 63155 1n91A 108 6.12e+01 d.206.1.1 80326 2bgcA 238 6.13e+01 1r1uA 106 6.15e+01 a.4.5.5 104771 2b0tA 738 6.17e+01 1g7sA 594 6.28e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1jmsA 381 6.30e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1z0xA 220 6.30e+01 1ny1A 240 6.34e+01 c.6.2.3 86395 1oz2A 331 6.35e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2fxaA 207 6.37e+01 2ck3I 50 6.39e+01 1qhtA 775 6.53e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1r5lA 262 6.54e+01 a.5.3.1,c.13.1.1 97099,97100 1k8qA 377 6.59e+01 c.69.1.6 72177 2b7kA 200 6.67e+01 1t6sA 162 6.70e+01 2c3nA 247 6.71e+01 1w2wA 211 6.79e+01 c.124.1.5 109130 1yg2A 179 6.80e+01 2bw8A 227 6.81e+01 1f20A 435 6.88e+01 b.43.4.1,c.25.1.4 64932,64933 1z72A 225 6.88e+01 1f7cA 231 7.00e+01 1f7cA a.116.1.1 19107 1hulA 108 7.01e+01 1hulA a.26.1.2 16865 2a2pA 129 7.01e+01 1kopA 223 7.05e+01 2cba b.74.1.1 27966 1ixcA 294 7.14e+01 a.4.5.37,c.94.1.1 83764,83765 1din 236 7.17e+01 1din c.69.1.9 34682 1dlwA 116 7.23e+01 1dlyA a.1.1.1 14982 1x67A 146 7.27e+01 2a6tA 271 7.42e+01 1e4cP 215 7.46e+01 2fua c.74.1.1 34969 1jmcA 246 7.49e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1yp2A 451 7.56e+01 1bc5A 269 7.59e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1q52A 314 7.61e+01 c.14.1.3 95846 1yn9A 169 7.64e+01 2cc0A 195 7.66e+01 1in6A 334 7.69e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1lmq 129 7.69e+01 3lzt d.2.1.2 36588 2fiuA 99 7.72e+01 2b8tA 223 7.76e+01 1lk2A 274 7.79e+01 b.1.1.2,d.19.1.1 91056,91057 1i07A 60 7.81e+01 1aojA b.34.2.1 61477 1hd2A 161 7.93e+01 c.47.1.10 60962 1nfvA 179 8.07e+01 a.25.1.1 85642 1k77A 260 8.26e+01 c.1.15.5 72096 1xi1A 575 8.37e+01 1umnA 165 8.44e+01 a.25.1.1 99607 1gky 187 8.45e+01 1gky c.37.1.1 31839 2ap3A 199 8.52e+01 1f7uA 607 8.59e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2fbnA 198 8.62e+01 2bf9A 36 8.70e+01 1b9mA 265 8.71e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1eejA 216 8.81e+01 1eejA c.47.1.9,d.17.3.1 33057,38071 5nul 138 8.82e+01 5nul c.23.5.1 31191 7taa 478 8.96e+01 7taa b.71.1.1,c.1.8.1 27778,28765