(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0327 SR346, Bacillus subtlis, 102 res
                       10                       20            30       
                       |                        |             |       
   1 ...MNKD...K...LRYAI...LKEI...F....EGN.....TP....LSENDIGVTEDQFDDAV
   2 ...MNKD...K...LRYAI...LKEI...F....EGN.....TP....LSENDIGVTEDQFDDAV
   3 m..AHNDyf.T...VAYKIlsyLKYC...Ye...EGQ.....NPdldiLDAPTFKISNNQFYKTL
   4 dlkANKNnyfN...IAYKIllyLKYC...Y....ENGiev..DPdi..LSSENIGISEKQFVLTL
   5 ...MAKD...DffyISYKI...LAYL...YhamkKGEki...DPgv..FDPQNYRVSYPYLNDIL
   6 ...----...T...TIFQI...LKAIdvaF....ENQdfnyeTT....LDLKKLKISKHRLELFI


       40          50             60           70        80        90  
       |           |              |            |         |         |  
   1 NFLKREGYIIG..VHY..SD..DRPHLY.KLG.P.EL.TEKGENYLKENGTWSKAYKTIKEIKDW
   2 NFLKREGYIIG..VHY..SD..DRPHLY.KLG.P.EL.TEKGENYLKENGTWSKAYKTIKEIKDW
   3 MMLMDDGYIKG..LKF..TPt.KTGTIVsNMD.R.VYiTSDGLQYLEENTMMKKAYKIFKEVRDW
   4 QMLLEDGYIKG..VSL..KPtiQGPTIIcNIQ.D.TYaTSSGLQYLIENSMMHKAYKVSKEVRDW
   5 EELKENGYIKG..VSFieTK..DGKLIT.GLS.DiKI.TIKGIEYLDDNSMMKKAYKTLKELKDW
   6 EELVDKNYIKGltVRH..SI..NGNPII.SIGnP.RL.TLDGLDFLENNSSMKKAYKFLKEAKEW


           100  
            |  
   1 IKLEHHHHHH
   2 IK--------
   3 LPLMK-----
   4 IPLLK-----
   5 IPGT------
   6 IPGL------